Wall clock time and date at job start Mon Mar 30 2020 00:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.52997 * 109.47377 * 90.00269 * 4 3 2 6 6 N 1.46497 * 109.47148 * 179.97438 * 5 4 3 7 7 C 1.36944 * 119.99836 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00081 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99772 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00448 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99893 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47367 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47085 * 120.00042 * 11 9 7 14 14 H 1.48503 * 109.47117 * 239.99789 * 11 9 7 15 15 C 1.34773 * 119.99455 * 90.00023 * 3 2 1 16 16 O 1.21287 * 119.99667 * 179.97438 * 15 3 2 17 17 C 1.50702 * 120.00755 * 0.02562 * 15 3 2 18 18 C 1.52997 * 109.47266 * 180.02562 * 17 15 3 19 19 H 1.08997 * 110.33197 * 305.69436 * 18 17 15 20 20 C 1.54484 * 110.37092 * 183.44995 * 18 17 15 21 21 C 1.54504 * 104.06326 * 217.18739 * 20 18 17 22 22 C 1.54485 * 104.06498 * 0.02562 * 21 20 18 23 23 O 1.44420 * 110.37777 * 67.95028 * 18 17 15 24 24 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 26 26 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 29 29 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 30 30 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 31 31 H 1.09006 * 109.46817 * 299.99710 * 5 4 3 32 32 H 1.08996 * 109.47652 * 59.99460 * 5 4 3 33 33 H 0.97006 * 120.00132 * 0.02562 * 6 5 4 34 34 H 0.96996 * 120.00186 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.46469 * 300.00239 * 17 15 3 36 36 H 1.09002 * 109.46873 * 59.99721 * 17 15 3 37 37 H 1.08997 * 110.50848 * 335.83503 * 20 18 17 38 38 H 1.08998 * 110.50967 * 98.40507 * 20 18 17 39 39 H 1.09000 * 110.51065 * 118.63966 * 21 20 18 40 40 H 1.08997 * 110.51494 * 241.22011 * 21 20 18 41 41 H 1.08993 * 110.37865 * 142.80867 * 22 21 20 42 42 H 1.09001 * 110.37023 * 265.03827 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 0.9875 2.7931 -1.7103 6 7 1.2319 3.4842 -2.9787 7 6 0.2278 4.2020 -3.5719 8 1 -0.7441 4.2590 -3.1044 9 6 0.4592 4.8564 -4.7740 10 7 1.6438 4.7874 -5.3436 11 14 -0.9103 5.8361 -5.5827 12 1 -2.1351 5.7582 -4.7467 13 1 -0.4919 7.2548 -5.7158 14 1 -1.1923 5.2749 -6.9284 15 6 2.2429 2.0165 1.1672 16 8 2.6477 3.1598 1.1673 17 6 1.9923 1.3059 2.4724 18 6 2.3230 2.2435 3.6353 19 1 3.3385 2.6270 3.5356 20 6 2.1560 1.5079 4.9834 21 6 1.5721 2.5825 5.9276 22 6 1.4548 3.8401 5.0381 23 8 1.3769 3.3334 3.6872 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.0644 2.7985 -1.1383 30 1 2.5506 1.3452 -2.0283 31 1 0.1856 2.0665 -1.8407 32 1 0.6994 3.5198 -0.9507 33 1 2.1048 3.4327 -3.3988 34 1 1.8056 5.2450 -6.1834 35 1 0.9444 1.0114 2.5302 36 1 2.6229 0.4186 2.5299 37 1 1.4628 0.6732 4.8796 38 1 3.1212 1.1582 5.3498 39 1 0.5901 2.2790 6.2906 40 1 2.2478 2.7645 6.7633 41 1 0.5527 4.3985 5.2876 42 1 2.3356 4.4714 5.1556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668367574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:37 Heat of formation + Delta-G solvation = -73.711363 kcal Electronic energy + Delta-G solvation = -21264.739077 eV Core-core repulsion = 18052.101643 eV Total energy + Delta-G solvation = -3212.637434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15291 -38.98037 -36.09058 -34.48704 -32.56625 -31.99209 -31.28414 -30.26566 -28.02011 -26.35225 -23.64848 -23.38218 -22.24097 -21.38065 -20.99841 -18.97602 -17.21551 -17.02428 -16.46770 -16.11478 -15.77551 -15.25773 -14.88364 -14.39994 -13.95825 -13.79708 -13.62401 -13.33371 -13.26385 -12.98435 -12.63533 -12.49765 -12.17113 -11.97075 -11.76728 -11.42619 -11.35115 -11.20546 -11.07300 -10.87220 -10.84476 -10.81025 -10.48493 -10.01841 -9.78611 -9.70805 -9.46426 -8.79991 -8.41522 -6.85161 -5.69897 -2.98452 2.87663 3.16828 3.48501 3.54065 3.56619 3.77509 4.34721 4.40238 4.65595 4.67707 4.74160 4.87820 4.90864 5.03311 5.15946 5.23860 5.30186 5.38295 5.41136 5.48437 5.57324 5.60003 5.65906 5.73292 5.74879 5.77792 5.81539 5.88657 5.94331 6.13949 6.15645 6.32053 6.70887 6.79474 6.88949 7.03820 7.63414 7.77375 8.45073 8.49545 9.59720 10.16914 10.52027 11.53277 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023781 B = 0.003846 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.111943 B = 7277.644750 C = 7841.158824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.107 3.893 3 N -0.611 5.611 4 C 0.109 3.891 5 C 0.142 3.858 6 N -0.731 5.731 7 C -0.234 4.234 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C 0.511 3.489 16 O -0.522 6.522 17 C -0.135 4.135 18 C 0.090 3.910 19 H 0.076 0.924 20 C -0.152 4.152 21 C -0.155 4.155 22 C 0.042 3.958 23 O -0.355 6.355 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.020 0.980 32 H 0.023 0.977 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -13.213 22.014 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.017 4.017 3 N -0.346 5.346 4 C -0.014 4.014 5 C 0.014 3.986 6 N -0.376 5.376 7 C -0.366 4.366 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.219 1.219 15 C 0.298 3.702 16 O -0.397 6.397 17 C -0.175 4.175 18 C 0.031 3.969 19 H 0.094 0.906 20 C -0.190 4.190 21 C -0.193 4.193 22 C -0.035 4.035 23 O -0.274 6.274 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.423 -12.440 21.808 25.147 hybrid contribution -0.441 0.384 -0.501 0.770 sum 0.983 -12.056 21.307 24.501 Atomic orbital electron populations 1.22330 0.95830 1.01998 1.03436 1.21556 0.94770 0.82535 1.02797 1.47976 1.66246 1.14007 1.06322 1.21681 0.99655 0.96774 0.83265 1.20992 0.94139 0.94264 0.89250 1.42242 1.13675 1.59950 1.21709 1.19266 0.92289 1.22819 1.02182 0.91187 1.24741 0.96961 1.01318 0.98108 1.69675 1.20956 1.48126 1.19580 0.86096 0.81163 0.79747 0.79097 1.20564 1.21842 1.21894 1.20448 0.77791 0.86825 0.85094 1.90755 1.44627 1.17251 1.87031 1.21831 1.04585 0.98865 0.92222 1.22711 0.94246 0.87001 0.92894 0.90628 1.23016 1.01934 0.98927 0.95093 1.22932 1.01881 0.95735 0.98721 1.23388 1.02110 0.95708 0.82281 1.89301 1.60635 1.48875 1.28546 0.92531 0.91117 0.91803 0.90185 0.90801 0.89881 0.90709 0.96226 0.95936 0.78336 0.93603 0.88141 0.87892 0.90512 0.90432 0.90752 0.90664 0.89231 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 10.24 37.16 0.38 -1.49 16 2 C 0.11 1.11 5.98 -4.04 -0.02 1.08 16 3 N -0.61 -9.02 2.47 -173.69 -0.43 -9.45 16 4 C 0.11 1.98 5.56 -4.05 -0.02 1.95 16 5 C 0.14 3.17 6.58 -4.04 -0.03 3.14 16 6 N -0.73 -19.85 5.60 -59.91 -0.34 -20.19 16 7 C -0.23 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 10 N -0.93 -29.28 13.06 55.49 0.72 -28.55 16 11 Si 0.91 23.29 29.55 -169.99 -5.02 18.27 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 14 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 15 C 0.51 8.07 7.59 -10.99 -0.08 7.98 16 16 O -0.52 -10.78 15.15 -3.81 -0.06 -10.83 16 17 C -0.14 -1.46 3.89 -27.88 -0.11 -1.57 16 18 C 0.09 1.03 2.75 -25.95 -0.07 0.96 16 19 H 0.08 0.94 7.96 -51.93 -0.41 0.53 16 20 C -0.15 -1.17 6.63 -25.16 -0.17 -1.34 16 21 C -0.15 -1.17 7.09 -25.16 -0.18 -1.35 16 22 C 0.04 0.44 7.63 37.94 0.29 0.73 16 23 O -0.35 -5.17 10.83 -44.60 -0.48 -5.66 16 24 H 0.06 0.61 7.22 -51.93 -0.38 0.23 16 25 H 0.07 0.94 6.26 -51.93 -0.33 0.61 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.77 7.89 -51.93 -0.41 0.36 16 28 H 0.07 0.55 6.44 -51.93 -0.33 0.21 16 29 H 0.08 1.68 7.42 -51.93 -0.39 1.30 16 30 H 0.07 1.24 7.89 -51.93 -0.41 0.83 16 31 H 0.02 0.43 6.26 -51.93 -0.33 0.10 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.38 10.75 7.67 -40.82 -0.31 10.44 16 34 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.10 0.99 7.19 -51.93 -0.37 0.62 16 36 H 0.10 0.76 7.40 -51.93 -0.38 0.38 16 37 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -36.26 338.03 -7.73 -43.99 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.96 Total: 4.89 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.26 Total: 2.44 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.04 Total: -58.19 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.54 Total: -16.49 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.27 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.26 -7.73 -43.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668367574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.719 kcal (2) G-P(sol) polarization free energy of solvation -36.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds