Wall clock time and date at job start Mon Mar 30 2020 00:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.52997 * 109.47377 * 90.00269 * 4 3 2 6 6 N 1.46497 * 109.47148 * 179.97438 * 5 4 3 7 7 C 1.36944 * 119.99836 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00081 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99772 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00448 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99893 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47367 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47085 * 120.00042 * 11 9 7 14 14 H 1.48503 * 109.47117 * 239.99789 * 11 9 7 15 15 C 1.34773 * 119.99455 * 90.00023 * 3 2 1 16 16 O 1.21287 * 119.99667 * 179.97438 * 15 3 2 17 17 C 1.50702 * 120.00755 * 0.02562 * 15 3 2 18 18 C 1.52997 * 109.47266 * 180.02562 * 17 15 3 19 19 H 1.08997 * 110.33197 * 305.69436 * 18 17 15 20 20 C 1.54484 * 110.37092 * 183.44995 * 18 17 15 21 21 C 1.54504 * 104.06326 * 217.18739 * 20 18 17 22 22 C 1.54485 * 104.06498 * 0.02562 * 21 20 18 23 23 O 1.44420 * 110.37777 * 67.95028 * 18 17 15 24 24 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 26 26 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 29 29 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 30 30 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 31 31 H 1.09006 * 109.46817 * 299.99710 * 5 4 3 32 32 H 1.08996 * 109.47652 * 59.99460 * 5 4 3 33 33 H 0.97006 * 120.00132 * 0.02562 * 6 5 4 34 34 H 0.96996 * 120.00186 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.46469 * 300.00239 * 17 15 3 36 36 H 1.09002 * 109.46873 * 59.99721 * 17 15 3 37 37 H 1.08997 * 110.50848 * 335.83503 * 20 18 17 38 38 H 1.08998 * 110.50967 * 98.40507 * 20 18 17 39 39 H 1.09000 * 110.51065 * 118.63966 * 21 20 18 40 40 H 1.08997 * 110.51494 * 241.22011 * 21 20 18 41 41 H 1.08993 * 110.37865 * 142.80867 * 22 21 20 42 42 H 1.09001 * 110.37023 * 265.03827 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 0.9875 2.7931 -1.7103 6 7 1.2319 3.4842 -2.9787 7 6 0.2278 4.2020 -3.5719 8 1 -0.7441 4.2590 -3.1044 9 6 0.4592 4.8564 -4.7740 10 7 1.6438 4.7874 -5.3436 11 14 -0.9103 5.8361 -5.5827 12 1 -2.1351 5.7582 -4.7467 13 1 -0.4919 7.2548 -5.7158 14 1 -1.1923 5.2749 -6.9284 15 6 2.2429 2.0165 1.1672 16 8 2.6477 3.1598 1.1673 17 6 1.9923 1.3059 2.4724 18 6 2.3230 2.2435 3.6353 19 1 3.3385 2.6270 3.5356 20 6 2.1560 1.5079 4.9834 21 6 1.5721 2.5825 5.9276 22 6 1.4548 3.8401 5.0381 23 8 1.3769 3.3334 3.6872 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.0644 2.7985 -1.1383 30 1 2.5506 1.3452 -2.0283 31 1 0.1856 2.0665 -1.8407 32 1 0.6994 3.5198 -0.9507 33 1 2.1048 3.4327 -3.3988 34 1 1.8056 5.2450 -6.1834 35 1 0.9444 1.0114 2.5302 36 1 2.6229 0.4186 2.5299 37 1 1.4628 0.6732 4.8796 38 1 3.1212 1.1582 5.3498 39 1 0.5901 2.2790 6.2906 40 1 2.2478 2.7645 6.7633 41 1 0.5527 4.3985 5.2876 42 1 2.3356 4.4714 5.1556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668367574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:37 Heat of formation + Delta-G solvation = -99.478489 kcal Electronic energy + Delta-G solvation = -21265.856423 eV Core-core repulsion = 18052.101643 eV Total energy + Delta-G solvation = -3213.754780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.25013 -39.94593 -37.52479 -36.33276 -33.84504 -33.16253 -32.50440 -31.51466 -29.53732 -27.48873 -25.55591 -24.35600 -23.35002 -22.80826 -21.83721 -20.17956 -19.21622 -18.19213 -17.46830 -17.15916 -16.81792 -16.60454 -16.15988 -15.95969 -15.35696 -15.13787 -15.03595 -14.74855 -14.53476 -14.32004 -13.80031 -13.37203 -13.20961 -13.06318 -12.93629 -12.74864 -12.57444 -12.57138 -12.35722 -12.17421 -12.10994 -12.06163 -11.90695 -11.76062 -11.44113 -10.99250 -10.75860 -10.68465 -9.70758 -9.08931 -8.00499 -5.31562 1.43542 1.46168 1.56225 1.67961 2.01020 2.53614 3.00397 3.32377 3.53795 3.65844 3.86797 4.00116 4.06441 4.10572 4.16626 4.19142 4.24348 4.27396 4.43494 4.51717 4.53305 4.60618 4.66476 4.68991 4.84617 4.86478 4.93089 4.98365 4.99370 5.05126 5.13987 5.15865 5.24619 5.40544 5.46793 5.60957 5.99613 6.21315 6.48131 7.25728 7.27180 7.98319 8.24684 9.23145 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023781 B = 0.003846 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.111943 B = 7277.644750 C = 7841.158824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.100 3.900 3 N -0.609 5.609 4 C 0.122 3.878 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.252 4.252 8 H 0.070 0.930 9 C -0.073 4.073 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.268 1.268 13 H -0.291 1.291 14 H -0.285 1.285 15 C 0.500 3.500 16 O -0.584 6.584 17 C -0.124 4.124 18 C 0.079 3.921 19 H 0.053 0.947 20 C -0.141 4.141 21 C -0.148 4.148 22 C 0.030 3.970 23 O -0.400 6.400 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.033 0.967 32 H -0.010 1.010 33 H 0.375 0.625 34 H 0.254 0.746 35 H 0.117 0.883 36 H 0.148 0.852 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 -15.796 23.572 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.022 4.022 3 N -0.342 5.342 4 C -0.002 4.002 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.383 4.383 8 H 0.088 0.912 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.193 1.193 13 H -0.218 1.218 14 H -0.211 1.211 15 C 0.290 3.710 16 O -0.463 6.463 17 C -0.163 4.163 18 C 0.021 3.979 19 H 0.071 0.929 20 C -0.178 4.178 21 C -0.185 4.185 22 C -0.047 4.047 23 O -0.320 6.320 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.135 0.865 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.051 0.949 32 H 0.008 0.992 33 H 0.207 0.793 34 H 0.063 0.937 35 H 0.135 0.865 36 H 0.166 0.834 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.527 -15.085 23.403 27.848 hybrid contribution -0.169 1.193 -0.954 1.537 sum 0.358 -13.893 22.448 26.402 Atomic orbital electron populations 1.22298 0.95926 1.03483 1.01557 1.21958 0.94614 0.80005 1.05586 1.48115 1.65801 1.15545 1.04702 1.21304 0.96440 0.96733 0.85711 1.21017 0.96711 0.93508 0.86486 1.42424 1.12905 1.60323 1.23018 1.19615 0.92848 1.23248 1.02636 0.91181 1.25639 0.99567 1.02560 0.98748 1.69827 1.22953 1.49065 1.19929 0.85002 0.78469 0.77707 0.78120 1.19266 1.21847 1.21106 1.21501 0.76300 0.86363 0.86805 1.90727 1.47415 1.20197 1.87978 1.21940 1.06416 0.99443 0.88509 1.22893 0.92684 0.86957 0.95404 0.92852 1.22999 1.03606 0.98853 0.92365 1.22925 1.03062 0.93996 0.98561 1.23593 1.02092 0.97332 0.81642 1.89257 1.61472 1.50392 1.30905 0.92818 0.94523 0.88600 0.88965 0.86482 0.92695 0.88659 0.94931 0.99195 0.79262 0.93705 0.86494 0.83443 0.88533 0.88390 0.89637 0.88873 0.88904 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 10.24 71.98 0.74 -2.50 16 2 C 0.10 1.74 5.98 86.38 0.52 2.26 16 3 N -0.61 -17.49 2.47 -821.82 -2.03 -19.53 16 4 C 0.12 4.55 5.56 86.38 0.48 5.03 16 5 C 0.15 6.95 6.58 86.38 0.57 7.52 16 6 N -0.74 -41.70 5.60 -343.46 -1.92 -43.62 16 7 C -0.25 -15.24 9.99 84.03 0.84 -14.40 16 8 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 9 C -0.07 -4.40 5.50 84.86 0.47 -3.94 16 10 N -0.97 -61.63 13.06 21.65 0.28 -61.34 16 11 Si 0.98 48.26 29.55 68.60 2.03 50.29 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 14 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 15 C 0.50 15.75 7.59 87.66 0.67 16.41 16 16 O -0.58 -25.45 15.15 5.90 0.09 -25.36 16 17 C -0.12 -2.38 3.89 29.85 0.12 -2.26 16 18 C 0.08 1.72 2.75 31.10 0.09 1.81 16 19 H 0.05 1.36 7.96 -2.39 -0.02 1.34 16 20 C -0.14 -1.71 6.63 31.61 0.21 -1.50 16 21 C -0.15 -1.88 7.09 31.61 0.22 -1.66 16 22 C 0.03 0.62 7.63 72.49 0.55 1.17 16 23 O -0.40 -11.91 10.83 -140.02 -1.52 -13.43 16 24 H 0.05 1.02 7.22 -2.39 -0.02 1.00 16 25 H 0.04 0.93 6.26 -2.39 -0.01 0.91 16 26 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.45 7.89 -2.39 -0.02 1.43 16 28 H 0.12 1.10 6.44 -2.39 -0.02 1.09 16 29 H 0.05 2.35 7.42 -2.38 -0.02 2.33 16 30 H 0.10 3.13 7.89 -2.39 -0.02 3.11 16 31 H 0.03 1.44 6.26 -2.38 -0.01 1.42 16 32 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H 0.38 21.87 7.67 -92.70 -0.71 21.16 16 34 H 0.25 15.48 8.31 -92.71 -0.77 14.70 16 35 H 0.12 1.91 7.19 -2.38 -0.02 1.89 16 36 H 0.15 1.47 7.40 -2.39 -0.02 1.45 16 37 H 0.10 0.82 7.87 -2.39 -0.02 0.80 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -83.40 338.03 2.68 -80.72 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.29 Total: 24.32 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 5.46 Total: 7.95 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -3.67 Total: -124.49 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -1.43 Total: -38.79 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -83.40 2.68 -80.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668367574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.761 kcal (2) G-P(sol) polarization free energy of solvation -83.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds