Wall clock time and date at job start Mon Mar 30 2020 01:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46493 * 120.00115 * 2 1 4 4 C 1.52998 * 109.47337 * 270.00411 * 3 2 1 5 5 C 1.52998 * 109.47543 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47541 * 179.97438 * 5 4 3 7 7 C 1.36937 * 120.00423 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99282 * 359.97438 * 7 6 5 9 9 C 1.38808 * 120.00198 * 179.97438 * 7 6 5 10 10 N 1.31616 * 119.99666 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99701 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47338 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46661 * 120.00631 * 11 9 7 14 14 H 1.48503 * 109.47048 * 240.00376 * 11 9 7 15 15 C 1.34779 * 119.99790 * 180.02562 * 2 1 3 16 16 O 1.21279 * 119.99675 * 180.02562 * 15 2 1 17 17 C 1.50699 * 120.00248 * 359.97438 * 15 2 1 18 18 C 1.52998 * 109.47126 * 180.02562 * 17 15 2 19 19 H 1.08997 * 110.67587 * 303.48991 * 18 17 15 20 20 C 1.55000 * 110.61526 * 180.52398 * 18 17 15 21 21 C 1.54818 * 102.09030 * 204.47771 * 20 18 17 22 22 C 1.54097 * 104.18808 * 20.87976 * 21 20 18 23 23 O 1.43745 * 107.29442 * 2.03270 * 22 21 20 24 24 H 1.09002 * 109.46963 * 269.99941 * 1 2 3 25 25 H 1.09002 * 109.47420 * 29.99602 * 1 2 3 26 26 H 1.09000 * 109.47139 * 150.00148 * 1 2 3 27 27 H 1.09000 * 109.47085 * 29.99845 * 3 2 1 28 28 H 1.08994 * 109.47306 * 150.00085 * 3 2 1 29 29 H 1.09004 * 109.46876 * 300.00152 * 4 3 2 30 30 H 1.09001 * 109.47426 * 59.99324 * 4 3 2 31 31 H 1.09004 * 109.47054 * 299.99915 * 5 4 3 32 32 H 1.08994 * 109.47307 * 59.99547 * 5 4 3 33 33 H 0.97005 * 119.99651 * 359.97438 * 6 5 4 34 34 H 0.97004 * 119.99581 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.47194 * 60.00103 * 17 15 2 36 36 H 1.09000 * 109.47202 * 300.00506 * 17 15 2 37 37 H 1.08996 * 110.90766 * 86.28222 * 20 18 17 38 38 H 1.09001 * 110.94010 * 322.68241 * 20 18 17 39 39 H 1.09004 * 110.48564 * 262.20686 * 21 20 18 40 40 H 1.08989 * 110.60109 * 139.61789 * 21 20 18 41 41 H 1.08998 * 109.88273 * 242.60534 * 22 21 20 42 42 H 1.08998 * 110.00322 * 121.52715 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2180 3.0351 -1.4425 6 7 3.4626 3.4578 -2.8237 7 6 4.1359 4.6236 -3.0740 8 1 4.4862 5.2317 -2.2530 9 6 4.3682 5.0238 -4.3827 10 7 3.9408 4.2829 -5.3830 11 14 5.2860 6.6146 -4.7239 12 1 5.6563 7.2581 -3.4379 13 1 6.5161 6.3192 -5.5016 14 1 4.4154 7.5308 -5.5037 15 6 2.1388 -1.1672 -0.0005 16 8 3.3516 -1.1672 -0.0001 17 6 1.3854 -2.4723 -0.0005 18 6 2.3796 -3.6352 -0.0005 19 1 3.0574 -3.5621 -0.8510 20 6 1.6316 -4.9928 -0.0138 21 6 2.6775 -5.9454 0.6151 22 6 3.6269 -5.0080 1.3861 23 8 3.1202 -3.6709 1.2383 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1498 1.1383 0.5138 29 1 3.0415 0.9507 -1.9564 30 1 1.5000 1.8407 -1.9563 31 1 2.6293 3.7950 -0.9285 32 1 4.1704 2.9043 -0.9289 33 1 3.1477 2.9117 -3.5610 34 1 4.1028 4.5628 -6.2976 35 1 0.7584 -2.5299 -0.8903 36 1 0.7590 -2.5303 0.8896 37 1 1.3931 -5.2955 -1.0333 38 1 0.7302 -4.9469 0.5974 39 1 3.2203 -6.4828 -0.1626 40 1 2.1965 -6.6464 1.2971 41 1 4.6314 -5.0720 0.9678 42 1 3.6466 -5.2825 2.4407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670027894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:23 Heat of formation + Delta-G solvation = -77.310942 kcal Electronic energy + Delta-G solvation = -20651.471686 eV Core-core repulsion = 17438.678163 eV Total energy + Delta-G solvation = -3212.793523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.20871 -39.05545 -36.05551 -34.75022 -32.79202 -32.24753 -31.67129 -29.73503 -27.12634 -26.86176 -24.86674 -22.90348 -21.97105 -21.39729 -20.83405 -19.05712 -17.22564 -17.00694 -16.74294 -16.30161 -15.80497 -15.41577 -15.02768 -14.52805 -14.39575 -13.88085 -13.48932 -13.35181 -13.11947 -12.95613 -12.74448 -12.42833 -12.31774 -12.02231 -11.87005 -11.75961 -11.46927 -11.39792 -10.97508 -10.87589 -10.82245 -10.67359 -10.32665 -10.00376 -9.77582 -9.70430 -9.59251 -8.81979 -8.56626 -6.85842 -5.71042 -2.99367 2.74278 3.02623 3.47267 3.52545 3.55185 3.64530 4.24948 4.31914 4.58728 4.64812 4.65684 4.82840 4.94129 4.97844 5.10371 5.20350 5.23892 5.29186 5.40860 5.42431 5.49116 5.52375 5.56966 5.61370 5.62623 5.71882 5.78110 5.83965 6.00572 6.17022 6.36856 6.45828 6.62713 6.76935 6.93450 6.96079 7.43609 7.75795 8.29288 8.48135 9.58895 10.17987 10.52717 11.52267 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.002956 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.686589 B = 9469.170177 C = 9803.651434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.119 3.881 4 C -0.138 4.138 5 C 0.156 3.844 6 N -0.734 5.734 7 C -0.236 4.236 8 H 0.071 0.929 9 C -0.017 4.017 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C 0.511 3.489 16 O -0.522 6.522 17 C -0.134 4.134 18 C 0.092 3.908 19 H 0.079 0.921 20 C -0.152 4.152 21 C -0.156 4.156 22 C 0.045 3.955 23 O -0.361 6.361 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.488 -20.405 13.722 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.354 5.354 3 C -0.003 4.003 4 C -0.177 4.177 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.368 4.368 8 H 0.089 0.911 9 C -0.213 4.213 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C 0.298 3.702 16 O -0.397 6.397 17 C -0.174 4.174 18 C 0.034 3.966 19 H 0.096 0.904 20 C -0.190 4.190 21 C -0.194 4.194 22 C -0.032 4.032 23 O -0.280 6.280 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.708 -20.067 13.916 26.279 hybrid contribution 0.218 0.516 -0.715 0.909 sum -9.490 -19.550 13.201 25.427 Atomic orbital electron populations 1.21795 0.79817 1.03383 1.01580 1.47920 1.06853 1.06429 1.74188 1.21461 0.97516 0.83524 0.97835 1.22048 1.00941 0.98897 0.95815 1.20545 0.96072 0.91947 0.88639 1.42371 1.68308 1.25961 1.01148 1.19306 1.27553 0.98069 0.91829 0.91094 1.24756 1.01843 0.99109 0.95568 1.69681 1.51728 1.38892 0.98096 0.86094 0.79169 0.83086 0.77745 1.20538 1.21872 1.21900 1.20483 0.88199 0.85097 0.76401 1.90750 1.13730 1.87048 1.48149 1.21775 0.98719 0.92095 1.04793 1.22859 0.92057 0.92823 0.88865 0.90354 1.23200 0.98904 0.94814 1.02033 1.22928 0.97470 0.98691 1.00285 1.23120 0.97013 0.82451 1.00622 1.88989 1.71041 1.28354 1.39616 0.92714 0.90643 0.91260 0.90661 0.89818 0.91654 0.92093 0.96411 0.96192 0.78350 0.93626 0.87588 0.88272 0.89990 0.90350 0.90655 0.90555 0.92418 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.24 59.85 0.61 1.26 16 2 N -0.62 -7.87 2.87 -181.58 -0.52 -8.39 16 3 C 0.12 1.74 5.41 -4.05 -0.02 1.72 16 4 C -0.14 -2.45 5.65 -26.73 -0.15 -2.61 16 5 C 0.16 3.37 6.26 -4.04 -0.03 3.34 16 6 N -0.73 -19.85 5.60 -59.91 -0.34 -20.19 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 9 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 10 N -0.93 -29.31 13.06 55.49 0.72 -28.58 16 11 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 15 C 0.51 7.24 7.58 -10.98 -0.08 7.16 16 16 O -0.52 -9.84 15.14 -5.82 -0.09 -9.93 16 17 C -0.13 -1.29 4.03 -27.88 -0.11 -1.40 16 18 C 0.09 0.98 2.79 -25.68 -0.07 0.90 16 19 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 20 C -0.15 -1.07 6.59 -24.72 -0.16 -1.24 16 21 C -0.16 -1.07 7.01 -25.20 -0.18 -1.25 16 22 C 0.05 0.42 7.70 37.73 0.29 0.71 16 23 O -0.36 -4.72 10.61 -46.61 -0.49 -5.21 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 26 H 0.07 0.43 6.44 -51.93 -0.33 0.09 16 27 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.08 1.37 7.42 -51.93 -0.39 0.98 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.38 10.85 7.67 -40.82 -0.31 10.54 16 34 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.11 0.74 7.40 -51.93 -0.38 0.35 16 36 H 0.10 0.78 8.11 -51.93 -0.42 0.36 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.42 8.14 -51.94 -0.42 -0.01 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -36.29 343.76 -7.99 -44.29 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.29 Total: 3.84 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.15 Total: 0.90 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.13 Total: -57.16 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.58 Total: -15.14 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.29 -7.99 -44.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670027894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.025 kcal (2) G-P(sol) polarization free energy of solvation -36.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds