Wall clock time and date at job start Mon Mar 30 2020 01:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46493 * 120.00115 * 2 1 4 4 C 1.52998 * 109.47337 * 270.00411 * 3 2 1 5 5 C 1.52998 * 109.47543 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47541 * 179.97438 * 5 4 3 7 7 C 1.36937 * 120.00423 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99282 * 359.97438 * 7 6 5 9 9 C 1.38808 * 120.00198 * 179.97438 * 7 6 5 10 10 N 1.31616 * 119.99666 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99701 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47338 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46661 * 120.00631 * 11 9 7 14 14 H 1.48503 * 109.47048 * 240.00376 * 11 9 7 15 15 C 1.34779 * 119.99790 * 180.02562 * 2 1 3 16 16 O 1.21279 * 119.99675 * 180.02562 * 15 2 1 17 17 C 1.50699 * 120.00248 * 359.97438 * 15 2 1 18 18 C 1.52998 * 109.47126 * 180.02562 * 17 15 2 19 19 H 1.08997 * 110.67587 * 303.48991 * 18 17 15 20 20 C 1.55000 * 110.61526 * 180.52398 * 18 17 15 21 21 C 1.54818 * 102.09030 * 204.47771 * 20 18 17 22 22 C 1.54097 * 104.18808 * 20.87976 * 21 20 18 23 23 O 1.43745 * 107.29442 * 2.03270 * 22 21 20 24 24 H 1.09002 * 109.46963 * 269.99941 * 1 2 3 25 25 H 1.09002 * 109.47420 * 29.99602 * 1 2 3 26 26 H 1.09000 * 109.47139 * 150.00148 * 1 2 3 27 27 H 1.09000 * 109.47085 * 29.99845 * 3 2 1 28 28 H 1.08994 * 109.47306 * 150.00085 * 3 2 1 29 29 H 1.09004 * 109.46876 * 300.00152 * 4 3 2 30 30 H 1.09001 * 109.47426 * 59.99324 * 4 3 2 31 31 H 1.09004 * 109.47054 * 299.99915 * 5 4 3 32 32 H 1.08994 * 109.47307 * 59.99547 * 5 4 3 33 33 H 0.97005 * 119.99651 * 359.97438 * 6 5 4 34 34 H 0.97004 * 119.99581 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.47194 * 60.00103 * 17 15 2 36 36 H 1.09000 * 109.47202 * 300.00506 * 17 15 2 37 37 H 1.08996 * 110.90766 * 86.28222 * 20 18 17 38 38 H 1.09001 * 110.94010 * 322.68241 * 20 18 17 39 39 H 1.09004 * 110.48564 * 262.20686 * 21 20 18 40 40 H 1.08989 * 110.60109 * 139.61789 * 21 20 18 41 41 H 1.08998 * 109.88273 * 242.60534 * 22 21 20 42 42 H 1.08998 * 110.00322 * 121.52715 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2180 3.0351 -1.4425 6 7 3.4626 3.4578 -2.8237 7 6 4.1359 4.6236 -3.0740 8 1 4.4862 5.2317 -2.2530 9 6 4.3682 5.0238 -4.3827 10 7 3.9408 4.2829 -5.3830 11 14 5.2860 6.6146 -4.7239 12 1 5.6563 7.2581 -3.4379 13 1 6.5161 6.3192 -5.5016 14 1 4.4154 7.5308 -5.5037 15 6 2.1388 -1.1672 -0.0005 16 8 3.3516 -1.1672 -0.0001 17 6 1.3854 -2.4723 -0.0005 18 6 2.3796 -3.6352 -0.0005 19 1 3.0574 -3.5621 -0.8510 20 6 1.6316 -4.9928 -0.0138 21 6 2.6775 -5.9454 0.6151 22 6 3.6269 -5.0080 1.3861 23 8 3.1202 -3.6709 1.2383 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1498 1.1383 0.5138 29 1 3.0415 0.9507 -1.9564 30 1 1.5000 1.8407 -1.9563 31 1 2.6293 3.7950 -0.9285 32 1 4.1704 2.9043 -0.9289 33 1 3.1477 2.9117 -3.5610 34 1 4.1028 4.5628 -6.2976 35 1 0.7584 -2.5299 -0.8903 36 1 0.7590 -2.5303 0.8896 37 1 1.3931 -5.2955 -1.0333 38 1 0.7302 -4.9469 0.5974 39 1 3.2203 -6.4828 -0.1626 40 1 2.1965 -6.6464 1.2971 41 1 4.6314 -5.0720 0.9678 42 1 3.6466 -5.2825 2.4407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670027894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:22 Heat of formation + Delta-G solvation = -102.678016 kcal Electronic energy + Delta-G solvation = -20652.571685 eV Core-core repulsion = 17438.678163 eV Total energy + Delta-G solvation = -3213.893522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.16550 -39.92653 -37.51194 -36.36538 -34.22513 -33.30006 -32.65924 -31.42036 -28.13516 -27.79234 -26.36684 -24.56536 -22.92600 -22.43880 -22.02957 -20.06906 -19.17729 -18.13557 -17.61862 -17.30327 -16.68198 -16.61227 -16.18649 -15.93311 -15.90522 -15.29521 -15.12453 -14.56259 -14.21716 -14.02761 -13.55821 -13.49550 -13.39792 -13.04476 -13.00688 -12.80400 -12.68514 -12.59505 -12.40709 -12.14837 -12.11894 -12.04905 -11.83300 -11.80112 -11.51930 -10.98334 -10.76234 -10.58688 -9.63304 -9.05577 -7.98636 -5.28940 1.45264 1.47377 1.57671 1.69705 2.06166 2.54197 2.94278 3.34773 3.56655 3.63584 3.85399 3.85959 4.04556 4.04772 4.16078 4.24821 4.25282 4.36942 4.49010 4.53097 4.57227 4.60925 4.70564 4.71970 4.79660 4.85758 4.88446 4.94610 4.97151 5.00281 5.11715 5.25235 5.27232 5.28157 5.45714 5.58512 6.03102 6.23652 6.45747 7.25551 7.28982 8.03450 8.27706 9.25528 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.002956 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.686589 B = 9469.170177 C = 9803.651434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.619 5.619 3 C 0.127 3.873 4 C -0.119 4.119 5 C 0.155 3.845 6 N -0.749 5.749 7 C -0.249 4.249 8 H 0.077 0.923 9 C -0.079 4.079 10 N -0.971 5.971 11 Si 0.980 3.020 12 H -0.265 1.265 13 H -0.293 1.293 14 H -0.288 1.288 15 C 0.498 3.502 16 O -0.583 6.583 17 C -0.124 4.124 18 C 0.081 3.919 19 H 0.049 0.951 20 C -0.140 4.140 21 C -0.151 4.151 22 C 0.034 3.966 23 O -0.397 6.397 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.011 0.989 33 H 0.372 0.628 34 H 0.253 0.747 35 H 0.139 0.861 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.045 0.955 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 -20.886 14.663 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.352 5.352 3 C 0.003 3.997 4 C -0.158 4.158 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.381 4.381 8 H 0.095 0.905 9 C -0.271 4.271 10 N -0.622 5.622 11 Si 0.808 3.192 12 H -0.189 1.189 13 H -0.220 1.220 14 H -0.215 1.215 15 C 0.288 3.712 16 O -0.463 6.463 17 C -0.163 4.163 18 C 0.023 3.977 19 H 0.067 0.933 20 C -0.178 4.178 21 C -0.189 4.189 22 C -0.043 4.043 23 O -0.317 6.317 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.204 0.796 34 H 0.061 0.939 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.064 0.936 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.943 -20.553 14.902 28.056 hybrid contribution 0.903 0.650 -0.956 1.467 sum -11.040 -19.903 13.947 26.693 Atomic orbital electron populations 1.22135 0.76615 1.04954 1.03528 1.48054 1.08778 1.05205 1.73142 1.21248 0.97632 0.85497 0.95347 1.21841 1.00072 0.95960 0.97946 1.20701 0.96350 0.94165 0.86018 1.42617 1.68226 1.25441 1.02915 1.19719 1.27351 0.98784 0.92245 0.90527 1.25671 1.03206 1.02808 0.95387 1.69841 1.53229 1.40820 0.98321 0.84987 0.77466 0.78842 0.77929 1.18942 1.21992 1.21488 1.21425 0.87872 0.86845 0.75073 1.90721 1.16558 1.87992 1.50987 1.21859 0.98344 0.88716 1.07403 1.22990 0.92135 0.95411 0.87186 0.93317 1.23182 0.98972 0.92159 1.03466 1.22935 0.96998 0.98404 1.00526 1.23311 0.97174 0.82002 1.01774 1.88952 1.71769 1.30429 1.40578 0.90509 0.90282 0.88609 0.87734 0.92206 0.94631 0.91151 0.94750 0.97137 0.79615 0.93870 0.84357 0.85709 0.88335 0.88461 0.90093 0.88505 0.93635 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 10.24 127.77 1.31 2.22 16 2 N -0.62 -14.89 2.87 -846.78 -2.43 -17.32 16 3 C 0.13 3.64 5.41 86.38 0.47 4.11 16 4 C -0.12 -4.27 5.65 30.59 0.17 -4.10 16 5 C 0.15 6.72 6.26 86.38 0.54 7.26 16 6 N -0.75 -41.20 5.60 -343.46 -1.92 -43.13 16 7 C -0.25 -14.74 9.99 84.03 0.84 -13.90 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 10 N -0.97 -61.75 13.06 21.65 0.28 -61.47 16 11 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 15 C 0.50 14.02 7.58 87.66 0.66 14.69 16 16 O -0.58 -23.18 15.14 7.86 0.12 -23.06 16 17 C -0.12 -2.13 4.03 29.85 0.12 -2.01 16 18 C 0.08 1.67 2.79 31.28 0.09 1.75 16 19 H 0.05 1.25 8.04 -2.39 -0.02 1.23 16 20 C -0.14 -1.62 6.59 31.90 0.21 -1.41 16 21 C -0.15 -1.79 7.01 31.59 0.22 -1.57 16 22 C 0.03 0.64 7.70 72.35 0.56 1.19 16 23 O -0.40 -10.56 10.61 -138.10 -1.47 -12.02 16 24 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.08 1.02 8.07 -2.39 -0.02 1.00 16 26 H 0.10 0.77 6.44 -2.39 -0.02 0.75 16 27 H 0.10 2.39 8.07 -2.39 -0.02 2.37 16 28 H 0.06 2.02 7.42 -2.39 -0.02 2.00 16 29 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.37 21.67 7.67 -92.70 -0.71 20.96 16 34 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.14 1.44 7.40 -2.39 -0.02 1.42 16 36 H 0.12 1.53 8.11 -2.39 -0.02 1.51 16 37 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 0.79 8.06 -2.39 -0.02 0.77 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -81.85 343.76 2.54 -79.32 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.27 Total: 24.03 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.66 Total: 3.96 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -4.07 Total: -121.91 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.35 Total: -35.08 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -81.85 2.54 -79.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670027894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.361 kcal (2) G-P(sol) polarization free energy of solvation -81.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds