Wall clock time and date at job start Mon Mar 30 2020 01:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42905 * 109.46837 * 2 1 4 4 C 1.42901 * 113.99687 * 179.97438 * 3 2 1 5 5 H 1.09006 * 115.56259 * 355.68689 * 4 3 2 6 6 C 1.53073 * 117.51081 * 141.39220 * 4 3 2 7 7 C 1.52998 * 59.98411 * 107.47893 * 6 4 3 8 8 H 1.08996 * 117.50072 * 107.50175 * 7 6 4 9 9 C 1.50706 * 117.49548 * 252.50153 * 7 6 4 10 10 O 1.21274 * 120.00042 * 68.46732 * 9 7 6 11 11 N 1.34777 * 119.99766 * 248.74267 * 9 7 6 12 12 C 1.46504 * 119.99854 * 0.02562 * 11 9 7 13 13 C 1.46496 * 120.00266 * 179.97438 * 11 9 7 14 14 C 1.52998 * 109.46931 * 90.00065 * 13 11 9 15 15 C 1.52996 * 109.47099 * 180.02562 * 14 13 11 16 16 N 1.46509 * 109.47105 * 179.97438 * 15 14 13 17 17 C 1.36934 * 120.00003 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00154 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00246 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99531 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00234 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46908 * 60.00268 * 21 19 17 23 23 H 1.48496 * 109.46992 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47215 * 300.00458 * 21 19 17 25 25 H 1.09003 * 109.47018 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47534 * 300.00137 * 1 2 3 27 27 H 1.09005 * 109.46879 * 60.00274 * 1 2 3 28 28 H 1.08993 * 109.47534 * 239.99863 * 2 1 3 29 29 H 1.09004 * 109.46570 * 119.99288 * 2 1 3 30 30 H 1.08992 * 117.51419 * 359.97438 * 6 4 3 31 31 H 1.09001 * 117.49003 * 214.96362 * 6 4 3 32 32 H 1.09002 * 109.47335 * 89.99996 * 12 11 9 33 33 H 1.09001 * 109.47076 * 209.99400 * 12 11 9 34 34 H 1.08996 * 109.47068 * 329.99428 * 12 11 9 35 35 H 1.08997 * 109.47682 * 210.00272 * 13 11 9 36 36 H 1.09004 * 109.47271 * 330.00368 * 13 11 9 37 37 H 1.09002 * 109.47544 * 300.00715 * 14 13 11 38 38 H 1.09001 * 109.47139 * 60.00533 * 14 13 11 39 39 H 1.08997 * 109.47528 * 300.00215 * 15 14 13 40 40 H 1.08999 * 109.47347 * 60.00694 * 15 14 13 41 41 H 0.96993 * 119.99829 * 0.02562 * 16 15 14 42 42 H 0.97005 * 119.99843 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9771 0.5198 0.0749 6 6 4.0523 2.5735 -0.8465 7 6 4.0420 2.6877 0.6792 8 1 4.9901 2.5549 1.2003 9 6 3.0955 3.6852 1.2959 10 8 1.8983 3.5002 1.2395 11 7 3.5794 4.7857 1.9052 12 6 5.0255 5.0125 1.9675 13 6 2.6594 5.7558 2.5042 14 6 2.3967 5.3760 3.9628 15 6 1.4354 6.3887 4.5882 16 7 1.1833 6.0247 5.9848 17 6 0.3478 6.7916 6.7521 18 1 -0.1258 7.6646 6.3277 19 6 0.1093 6.4471 8.0755 20 7 0.6868 5.3835 8.5929 21 14 -1.0311 7.4929 9.1220 22 1 -2.3831 7.5167 8.5084 23 1 -1.1179 6.9158 10.4875 24 1 -0.4993 8.8770 9.2019 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.3747 3.2195 -1.4045 31 1 5.0072 2.3651 -1.3291 32 1 5.3423 5.5801 1.0925 33 1 5.2668 5.5727 2.8708 34 1 5.5431 4.0535 1.9855 35 1 3.1024 6.7508 2.4619 36 1 1.7190 5.7530 1.9530 37 1 1.9538 4.3809 4.0051 38 1 3.3371 5.3788 4.5140 39 1 1.8779 7.3839 4.5459 40 1 0.4951 6.3854 4.0370 41 1 1.6089 5.2409 6.3661 42 1 0.5205 5.1430 9.5178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670027989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:44 Heat of formation + Delta-G solvation = -38.257048 kcal Electronic energy + Delta-G solvation = -20678.333734 eV Core-core repulsion = 17467.233715 eV Total energy + Delta-G solvation = -3211.100019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14415 -38.20966 -36.06609 -35.17593 -34.68715 -32.15578 -30.84639 -29.77829 -26.82898 -25.92734 -23.79064 -22.97575 -22.42246 -22.03363 -20.79335 -18.97322 -17.77887 -16.97720 -16.38644 -15.90545 -15.63666 -15.44926 -14.79251 -14.41354 -14.35632 -13.87486 -13.23714 -13.16108 -12.99100 -12.79596 -12.68625 -12.65164 -12.36433 -12.24024 -11.84660 -11.76298 -11.30923 -11.09719 -10.85741 -10.78635 -10.71541 -10.62103 -10.29776 -10.04940 -9.67092 -9.55032 -9.21191 -8.79646 -8.50292 -6.84485 -5.69329 -2.97730 2.59455 3.04056 3.34332 3.49192 3.52759 3.54429 3.68311 4.39017 4.54787 4.66055 4.71117 4.82928 4.95499 4.98061 5.15949 5.19926 5.23505 5.27755 5.31610 5.43017 5.54977 5.58521 5.63610 5.64957 5.74000 5.80113 5.82666 6.03502 6.09455 6.19228 6.38941 6.47921 6.67746 6.95557 6.98236 7.14947 7.49699 7.75937 8.39194 8.49784 9.60333 10.19684 10.54556 11.53830 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.003445 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.441499 B = 8126.189677 C = 9051.097868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.323 6.323 4 C 0.050 3.950 5 H 0.116 0.884 6 C -0.161 4.161 7 C -0.196 4.196 8 H 0.128 0.872 9 C 0.537 3.463 10 O -0.507 6.507 11 N -0.617 5.617 12 C 0.080 3.920 13 C 0.121 3.879 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.733 5.733 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.020 0.980 41 H 0.383 0.617 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.304 -8.804 -21.128 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.241 6.241 4 C -0.010 4.010 5 H 0.134 0.866 6 C -0.199 4.199 7 C -0.217 4.217 8 H 0.145 0.855 9 C 0.324 3.676 10 O -0.381 6.381 11 N -0.352 5.352 12 C -0.063 4.063 13 C -0.002 4.002 14 C -0.177 4.177 15 C 0.028 3.972 16 N -0.377 5.377 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.217 0.783 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.387 -8.612 -21.100 25.046 hybrid contribution -0.049 0.158 0.943 0.957 sum 10.338 -8.454 -20.158 24.181 Atomic orbital electron populations 1.21712 0.93490 1.01933 1.03649 1.22547 0.96023 0.83886 0.99620 1.88191 1.16850 1.25509 1.93511 1.22549 0.83830 0.92902 1.01685 0.86627 1.23406 1.02877 1.02639 0.90933 1.22826 1.01454 1.00371 0.97058 0.85475 1.19479 0.88526 0.81246 0.78384 1.90780 1.15381 1.74607 1.57293 1.47860 1.07178 1.23055 1.57074 1.21777 0.80456 1.01950 1.02147 1.21447 0.94032 0.90683 0.94021 1.22048 1.00324 1.01015 0.94318 1.20546 0.95192 0.94720 0.86724 1.42352 1.56085 1.32652 1.06660 1.19221 1.19327 1.05890 0.92531 0.91207 1.24748 1.00937 0.98266 0.97206 1.69662 1.47497 1.27026 1.14233 0.86241 0.80700 0.79501 0.79612 1.21257 1.21700 1.21293 0.91276 0.91316 0.91952 0.93643 0.93364 0.87706 0.87291 0.92815 0.90857 0.91294 0.90686 0.89886 0.91632 0.92130 0.96443 0.96217 0.78342 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 37.16 0.38 -1.15 16 2 C 0.06 0.58 6.53 37.16 0.24 0.82 16 3 O -0.32 -4.41 8.48 -57.36 -0.49 -4.90 16 4 C 0.05 0.51 6.41 -26.69 -0.17 0.34 16 5 H 0.12 0.83 7.93 -51.93 -0.41 0.41 16 6 C -0.16 -1.38 10.19 -26.69 -0.27 -1.66 16 7 C -0.20 -2.05 5.28 -91.77 -0.48 -2.54 16 8 H 0.13 0.98 6.44 -51.93 -0.33 0.65 16 9 C 0.54 7.98 7.46 -10.98 -0.08 7.90 16 10 O -0.51 -9.79 14.50 -16.57 -0.24 -10.03 16 11 N -0.62 -8.18 2.87 -181.57 -0.52 -8.70 16 12 C 0.08 0.72 10.27 59.85 0.61 1.33 16 13 C 0.12 1.80 5.41 -4.04 -0.02 1.78 16 14 C -0.14 -2.51 5.65 -26.73 -0.15 -2.66 16 15 C 0.16 3.41 6.26 -4.04 -0.03 3.39 16 16 N -0.73 -20.02 5.60 -59.90 -0.34 -20.36 16 17 C -0.24 -7.05 9.99 -15.06 -0.15 -7.21 16 18 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 20 N -0.94 -29.44 13.06 55.49 0.72 -28.72 16 21 Si 0.91 23.19 29.55 -169.99 -5.02 18.16 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 34 H 0.07 0.49 6.00 -51.93 -0.31 0.18 16 35 H 0.07 0.95 8.07 -51.93 -0.42 0.54 16 36 H 0.08 1.37 7.42 -51.93 -0.39 0.98 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.38 10.97 7.67 -40.82 -0.31 10.65 16 42 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -36.35 350.05 -8.04 -44.38 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.21 Total: 5.12 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.22 Total: -0.23 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.13 Total: -57.78 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.73 Total: -14.93 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.35 -8.04 -44.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670027989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.125 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds