Wall clock time and date at job start Mon Mar 30 2020 01:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42905 * 109.46837 * 2 1 4 4 C 1.42901 * 113.99687 * 179.97438 * 3 2 1 5 5 H 1.09006 * 115.56259 * 355.68689 * 4 3 2 6 6 C 1.53073 * 117.51081 * 141.39220 * 4 3 2 7 7 C 1.52998 * 59.98411 * 107.47893 * 6 4 3 8 8 H 1.08996 * 117.50072 * 107.50175 * 7 6 4 9 9 C 1.50706 * 117.49548 * 252.50153 * 7 6 4 10 10 O 1.21274 * 120.00042 * 68.46732 * 9 7 6 11 11 N 1.34777 * 119.99766 * 248.74267 * 9 7 6 12 12 C 1.46504 * 119.99854 * 0.02562 * 11 9 7 13 13 C 1.46496 * 120.00266 * 179.97438 * 11 9 7 14 14 C 1.52998 * 109.46931 * 90.00065 * 13 11 9 15 15 C 1.52996 * 109.47099 * 180.02562 * 14 13 11 16 16 N 1.46509 * 109.47105 * 179.97438 * 15 14 13 17 17 C 1.36934 * 120.00003 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00154 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00246 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99531 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00234 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46908 * 60.00268 * 21 19 17 23 23 H 1.48496 * 109.46992 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47215 * 300.00458 * 21 19 17 25 25 H 1.09003 * 109.47018 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47534 * 300.00137 * 1 2 3 27 27 H 1.09005 * 109.46879 * 60.00274 * 1 2 3 28 28 H 1.08993 * 109.47534 * 239.99863 * 2 1 3 29 29 H 1.09004 * 109.46570 * 119.99288 * 2 1 3 30 30 H 1.08992 * 117.51419 * 359.97438 * 6 4 3 31 31 H 1.09001 * 117.49003 * 214.96362 * 6 4 3 32 32 H 1.09002 * 109.47335 * 89.99996 * 12 11 9 33 33 H 1.09001 * 109.47076 * 209.99400 * 12 11 9 34 34 H 1.08996 * 109.47068 * 329.99428 * 12 11 9 35 35 H 1.08997 * 109.47682 * 210.00272 * 13 11 9 36 36 H 1.09004 * 109.47271 * 330.00368 * 13 11 9 37 37 H 1.09002 * 109.47544 * 300.00715 * 14 13 11 38 38 H 1.09001 * 109.47139 * 60.00533 * 14 13 11 39 39 H 1.08997 * 109.47528 * 300.00215 * 15 14 13 40 40 H 1.08999 * 109.47347 * 60.00694 * 15 14 13 41 41 H 0.96993 * 119.99829 * 0.02562 * 16 15 14 42 42 H 0.97005 * 119.99843 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9771 0.5198 0.0749 6 6 4.0523 2.5735 -0.8465 7 6 4.0420 2.6877 0.6792 8 1 4.9901 2.5549 1.2003 9 6 3.0955 3.6852 1.2959 10 8 1.8983 3.5002 1.2395 11 7 3.5794 4.7857 1.9052 12 6 5.0255 5.0125 1.9675 13 6 2.6594 5.7558 2.5042 14 6 2.3967 5.3760 3.9628 15 6 1.4354 6.3887 4.5882 16 7 1.1833 6.0247 5.9848 17 6 0.3478 6.7916 6.7521 18 1 -0.1258 7.6646 6.3277 19 6 0.1093 6.4471 8.0755 20 7 0.6868 5.3835 8.5929 21 14 -1.0311 7.4929 9.1220 22 1 -2.3831 7.5167 8.5084 23 1 -1.1179 6.9158 10.4875 24 1 -0.4993 8.8770 9.2019 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.3747 3.2195 -1.4045 31 1 5.0072 2.3651 -1.3291 32 1 5.3423 5.5801 1.0925 33 1 5.2668 5.5727 2.8708 34 1 5.5431 4.0535 1.9855 35 1 3.1024 6.7508 2.4619 36 1 1.7190 5.7530 1.9530 37 1 1.9538 4.3809 4.0051 38 1 3.3371 5.3788 4.5140 39 1 1.8779 7.3839 4.5459 40 1 0.4951 6.3854 4.0370 41 1 1.6089 5.2409 6.3661 42 1 0.5205 5.1430 9.5178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670027989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:43 Heat of formation + Delta-G solvation = -62.740443 kcal Electronic energy + Delta-G solvation = -20679.395414 eV Core-core repulsion = 17467.233715 eV Total energy + Delta-G solvation = -3212.161699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15432 -39.11419 -37.48866 -36.33886 -36.06117 -34.03164 -31.79582 -31.49067 -27.96147 -27.23403 -25.44756 -23.77850 -23.64872 -23.00005 -22.38582 -19.95579 -19.18251 -18.68148 -17.46366 -16.91242 -16.59077 -16.46848 -16.37212 -15.87314 -15.66930 -15.31618 -14.98428 -14.67355 -14.01083 -13.79802 -13.58334 -13.52841 -13.41949 -13.33292 -13.04760 -12.95915 -12.75070 -12.70564 -12.44276 -12.12593 -12.09014 -11.90051 -11.82957 -11.79328 -11.39160 -10.96292 -10.67705 -10.01833 -9.60388 -9.05897 -7.98149 -5.28844 1.45049 1.49818 1.55781 1.57871 2.04894 2.54504 2.62562 2.89993 3.34841 3.59554 3.83188 3.86685 3.89632 4.02779 4.14766 4.18920 4.24283 4.30557 4.44956 4.48856 4.48953 4.52364 4.59271 4.69845 4.75991 4.82550 4.85400 4.89422 4.97150 5.00883 5.07542 5.24731 5.26193 5.27313 5.44922 5.60265 6.23457 6.39825 6.49832 7.28832 7.31549 8.03224 8.27798 9.25612 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.003445 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.441499 B = 8126.189677 C = 9051.097868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.366 6.366 4 C 0.032 3.968 5 H 0.150 0.850 6 C -0.138 4.138 7 C -0.204 4.204 8 H 0.161 0.839 9 C 0.523 3.477 10 O -0.566 6.566 11 N -0.618 5.618 12 C 0.073 3.927 13 C 0.128 3.872 14 C -0.119 4.119 15 C 0.155 3.845 16 N -0.749 5.749 17 C -0.254 4.254 18 H 0.077 0.923 19 C -0.077 4.077 20 N -0.972 5.972 21 Si 0.981 3.019 22 H -0.279 1.279 23 H -0.292 1.292 24 H -0.273 1.273 25 H 0.095 0.905 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.151 0.849 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.011 0.989 41 H 0.372 0.628 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.309 -8.555 -22.221 27.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.285 6.285 4 C -0.027 4.027 5 H 0.167 0.833 6 C -0.176 4.176 7 C -0.225 4.225 8 H 0.178 0.822 9 C 0.312 3.688 10 O -0.445 6.445 11 N -0.350 5.350 12 C -0.069 4.069 13 C 0.005 3.995 14 C -0.158 4.158 15 C 0.028 3.972 16 N -0.392 5.392 17 C -0.386 4.386 18 H 0.095 0.905 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.808 3.192 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.199 1.199 25 H 0.114 0.886 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.169 0.831 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.029 0.971 41 H 0.203 0.797 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.440 -8.331 -22.235 26.806 hybrid contribution -0.654 0.086 1.228 1.394 sum 11.786 -8.245 -21.007 25.459 Atomic orbital electron populations 1.21746 0.94176 1.03065 1.01818 1.22697 0.95643 0.83116 1.01036 1.88148 1.19202 1.27299 1.93827 1.23034 0.82757 0.94477 1.02416 0.83267 1.23484 1.03923 1.00772 0.89386 1.22907 1.01656 0.99458 0.98469 0.82168 1.20379 0.88606 0.81914 0.77896 1.90753 1.18102 1.75986 1.59614 1.47995 1.08846 1.22208 1.55991 1.22087 0.77601 1.03762 1.03405 1.21240 0.94305 0.92607 0.91368 1.21838 0.99266 0.98137 0.96541 1.20696 0.95779 0.96453 0.84238 1.42598 1.55885 1.32163 1.08544 1.19667 1.19478 1.06220 0.93194 0.90500 1.25677 1.02884 0.99756 0.98583 1.69833 1.49140 1.28847 1.14376 0.85112 0.78609 0.78110 0.77330 1.20473 1.21816 1.19860 0.88649 0.94371 0.92478 0.90938 0.92968 0.89917 0.83075 0.90558 0.90479 0.89037 0.87680 0.92112 0.94853 0.91342 0.94708 0.97101 0.79672 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 10.28 71.98 0.74 -2.44 16 2 C 0.05 1.04 6.53 71.98 0.47 1.51 16 3 O -0.37 -10.13 8.48 -127.82 -1.08 -11.21 16 4 C 0.03 0.60 6.41 30.62 0.20 0.79 16 5 H 0.15 1.65 7.93 -2.38 -0.02 1.63 16 6 C -0.14 -2.02 10.19 30.62 0.31 -1.70 16 7 C -0.20 -3.85 5.28 -11.54 -0.06 -3.91 16 8 H 0.16 1.85 6.44 -2.39 -0.02 1.83 16 9 C 0.52 15.53 7.46 87.66 0.65 16.19 16 10 O -0.57 -23.07 14.50 18.15 0.26 -22.80 16 11 N -0.62 -15.74 2.87 -846.76 -2.43 -18.17 16 12 C 0.07 1.08 10.27 127.77 1.31 2.40 16 13 C 0.13 3.81 5.41 86.38 0.47 4.28 16 14 C -0.12 -4.39 5.65 30.59 0.17 -4.22 16 15 C 0.16 6.86 6.26 86.38 0.54 7.40 16 16 N -0.75 -41.71 5.60 -343.44 -1.92 -43.64 16 17 C -0.25 -15.14 9.99 84.03 0.84 -14.30 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 20 N -0.97 -62.12 13.06 21.65 0.28 -61.83 16 21 Si 0.98 47.78 29.55 68.60 2.03 49.81 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 25 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.12 8.07 -2.39 -0.02 1.10 16 34 H 0.09 0.96 6.00 -2.39 -0.01 0.94 16 35 H 0.11 2.48 8.07 -2.39 -0.02 2.46 16 36 H 0.06 2.08 7.42 -2.38 -0.02 2.06 16 37 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.37 21.95 7.67 -92.71 -0.71 21.24 16 42 H 0.25 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -82.42 350.05 3.52 -78.90 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.28 Total: 27.14 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 6.11 Total: 1.81 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -4.07 Total: -123.64 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.82 Total: -34.02 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -82.42 3.52 -78.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670027989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.158 kcal (2) G-P(sol) polarization free energy of solvation -82.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds