Wall clock time and date at job start Mon Mar 30 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00388 * 2 1 4 4 C 1.53001 * 109.47283 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47444 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47393 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47205 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00131 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99991 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00068 * 0.02562 * 9 7 6 11 11 C 1.46498 * 120.00146 * 180.02562 * 9 7 6 12 12 C 1.53496 * 114.21138 * 119.99825 * 11 9 7 13 13 N 1.47070 * 87.98076 * 87.71671 * 12 11 9 14 14 C 1.36941 * 136.05440 * 207.08124 * 13 12 11 15 15 H 1.07997 * 120.00412 * 7.86028 * 14 13 12 16 16 C 1.38814 * 119.99634 * 187.85423 * 14 13 12 17 17 N 1.31616 * 119.99939 * 173.06607 * 16 14 13 18 18 Si 1.86796 * 120.00336 * 353.06587 * 16 14 13 19 19 H 1.48499 * 109.47209 * 175.20930 * 18 16 14 20 20 H 1.48510 * 109.47106 * 295.21158 * 18 16 14 21 21 H 1.48503 * 109.47106 * 55.20691 * 18 16 14 22 22 C 1.47063 * 87.88519 * 27.34830 * 13 12 11 23 23 H 1.09000 * 109.46824 * 300.00560 * 1 2 3 24 24 H 1.09003 * 109.46776 * 59.99604 * 1 2 3 25 25 H 1.08992 * 109.47721 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47405 * 59.99904 * 3 2 1 27 27 H 1.08994 * 109.47489 * 299.99754 * 3 2 1 28 28 H 1.09001 * 109.46866 * 60.00334 * 4 3 2 29 29 H 1.09000 * 109.47419 * 300.00625 * 4 3 2 30 30 H 1.09003 * 109.47393 * 60.00286 * 5 4 3 31 31 H 1.09007 * 109.47093 * 300.00264 * 5 4 3 32 32 H 1.09003 * 109.46933 * 59.99618 * 6 5 4 33 33 H 1.09000 * 109.46527 * 299.99870 * 6 5 4 34 34 H 1.08993 * 109.47136 * 270.00131 * 10 9 7 35 35 H 1.08998 * 109.46845 * 29.99973 * 10 9 7 36 36 H 1.09001 * 109.46872 * 149.99989 * 10 9 7 37 37 H 1.09007 * 113.27923 * 346.93027 * 11 9 7 38 38 H 1.09000 * 113.46265 * 332.94223 * 12 11 9 39 39 H 1.08991 * 113.52116 * 202.50467 * 12 11 9 40 40 H 0.97007 * 119.99810 * 1.51422 * 17 16 14 41 41 H 1.08997 * 113.47359 * 87.43609 * 22 13 12 42 42 H 1.09003 * 113.46485 * 217.88067 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1579 2.5821 0.0013 6 6 5.6832 2.4612 0.0013 7 6 6.2962 3.8379 0.0013 8 8 5.5834 4.8192 0.0018 9 7 7.6366 3.9787 0.0018 10 6 8.4976 2.7934 0.0018 11 6 8.2325 5.3169 0.0024 12 6 9.1276 5.6069 1.2152 13 7 10.2488 5.0262 0.4610 14 6 11.4237 4.3949 0.7711 15 1 11.6340 4.1170 1.7933 16 6 12.3444 4.1120 -0.2285 17 7 13.5287 3.6307 0.0846 18 14 11.9026 4.4144 -2.0181 19 1 13.0867 4.1446 -2.8727 20 1 10.7911 3.5120 -2.4129 21 1 11.4785 5.8270 -2.1914 22 6 9.5560 5.4280 -0.7724 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8900 27 1 1.6888 1.8463 -0.8899 28 1 3.8574 0.6434 -0.8892 29 1 3.8568 0.6436 0.8908 30 1 3.8360 3.1229 0.8913 31 1 3.8367 3.1233 -0.8887 32 1 6.0048 1.9206 -0.8889 33 1 6.0046 1.9199 0.8911 34 1 8.7108 2.4992 1.0294 35 1 7.9913 1.9765 -0.5124 36 1 9.4314 3.0227 -0.5116 37 1 7.5169 6.1074 -0.2241 38 1 8.8570 5.0329 2.1014 39 1 9.2483 6.6701 1.4224 40 1 13.7502 3.4530 1.0122 41 1 9.7891 6.4443 -1.0900 42 1 9.6503 4.7015 -1.5795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671111646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:04 Heat of formation + Delta-G solvation = -21.846082 kcal Electronic energy + Delta-G solvation = -20997.539187 eV Core-core repulsion = 17787.150800 eV Total energy + Delta-G solvation = -3210.388386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10510 -38.40400 -38.03024 -34.83884 -34.23709 -32.36058 -30.12258 -28.24077 -26.83624 -26.23580 -25.35058 -24.36065 -22.42776 -21.38224 -19.97958 -18.41558 -17.50783 -16.88754 -16.61432 -16.51346 -16.08883 -15.72723 -15.28234 -14.67674 -14.50018 -14.02361 -13.80719 -13.24503 -13.21538 -12.80801 -12.70363 -12.50780 -12.09343 -11.78533 -11.68995 -11.60671 -11.43466 -11.32275 -11.11553 -10.90128 -10.79603 -10.62291 -10.39421 -9.96336 -9.57793 -9.38864 -9.23329 -8.92237 -8.17677 -7.19488 -6.37657 -3.28519 2.83135 3.18887 3.32108 3.38597 3.52254 3.58496 4.52213 4.63127 4.69773 4.70302 4.75489 4.97789 4.99160 5.08704 5.12984 5.16938 5.19057 5.31725 5.36343 5.44979 5.53326 5.58301 5.67545 5.74281 5.81718 5.91339 6.01997 6.08276 6.17975 6.19331 6.20424 6.34965 6.37024 6.61071 6.85617 6.99569 7.05528 7.76870 8.18435 8.41724 8.92059 9.44208 10.31648 11.14650 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034738 B = 0.003414 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.840045 B = 8199.708277 C = 8467.791337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.060 3.940 4 C -0.119 4.119 5 C -0.100 4.100 6 C -0.137 4.137 7 C 0.512 3.488 8 O -0.554 6.554 9 N -0.582 5.582 10 C 0.081 3.919 11 C 0.097 3.903 12 C 0.110 3.890 13 N -0.626 5.626 14 C -0.303 4.303 15 H 0.082 0.918 16 C -0.025 4.025 17 N -0.932 5.932 18 Si 1.068 2.932 19 H -0.295 1.295 20 H -0.293 1.293 21 H -0.287 1.287 22 C 0.087 3.913 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.261 0.739 41 H 0.057 0.943 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.687 -4.723 -1.302 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.016 4.016 4 C -0.157 4.157 5 C -0.138 4.138 6 C -0.177 4.177 7 C 0.300 3.700 8 O -0.433 6.433 9 N -0.313 5.313 10 C -0.062 4.062 11 C -0.008 4.008 12 C -0.018 4.018 13 N -0.355 5.355 14 C -0.429 4.429 15 H 0.100 0.900 16 C -0.224 4.224 17 N -0.574 5.574 18 Si 0.901 3.099 19 H -0.222 1.222 20 H -0.222 1.222 21 H -0.214 1.214 22 C -0.039 4.039 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.094 -4.610 -2.775 21.770 hybrid contribution -0.522 0.376 1.688 1.807 sum -21.616 -4.234 -1.087 22.054 Atomic orbital electron populations 1.22728 0.81131 1.02661 0.99975 1.87865 1.19649 1.28393 1.95445 1.22571 0.94308 0.84378 1.00352 1.21542 0.92867 0.97768 1.03498 1.21231 0.93110 0.95720 1.03748 1.21659 0.96377 0.95091 1.04559 1.20648 0.81740 0.91555 0.76017 1.90648 1.60756 1.40901 1.51003 1.47428 1.05331 1.07030 1.71528 1.21895 0.96126 0.85595 1.02547 1.22512 0.94525 0.84505 0.99302 1.22771 0.86970 0.96956 0.95056 1.46137 1.22309 1.65895 1.01175 1.20087 0.92741 1.33771 0.96280 0.90010 1.25699 0.92679 0.99713 1.04279 1.70920 1.18523 1.47365 1.20634 0.83739 0.74086 0.76164 0.75902 1.22210 1.22162 1.21381 1.23183 0.89244 0.98996 0.92490 0.94106 0.94113 0.89703 0.93211 0.93203 0.90975 0.90974 0.91037 0.91042 0.88804 0.88806 0.92485 0.92347 0.88634 0.87697 0.93547 0.93501 0.92863 0.92525 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.02 10.70 -35.23 -0.38 -4.40 16 3 C 0.06 0.54 5.94 37.16 0.22 0.76 16 4 C -0.12 -1.08 5.58 -26.73 -0.15 -1.23 16 5 C -0.10 -1.04 4.50 -26.73 -0.12 -1.16 16 6 C -0.14 -1.55 4.25 -27.88 -0.12 -1.67 16 7 C 0.51 8.03 7.67 -10.99 -0.08 7.94 16 8 O -0.55 -10.17 15.49 5.55 0.09 -10.08 16 9 N -0.58 -9.89 3.12 -173.56 -0.54 -10.43 16 10 C 0.08 1.34 9.35 59.85 0.56 1.90 16 11 C 0.10 1.77 4.67 -67.68 -0.32 1.46 16 12 C 0.11 2.18 8.31 -8.50 -0.07 2.11 16 13 N -0.63 -14.68 2.40 -184.63 -0.44 -15.13 16 14 C -0.30 -8.29 10.70 -15.06 -0.16 -8.45 16 15 H 0.08 2.39 8.05 -52.49 -0.42 1.97 16 16 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 17 N -0.93 -28.59 13.71 55.49 0.76 -27.83 16 18 Si 1.07 25.87 24.77 -169.99 -4.21 21.66 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.29 -6.55 6.53 56.52 0.37 -6.18 16 21 H -0.29 -6.57 6.16 56.52 0.35 -6.22 16 22 C 0.09 1.79 4.73 -8.37 -0.04 1.75 16 23 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.07 0.79 8.10 -51.92 -0.42 0.36 16 32 H 0.09 0.93 7.40 -51.93 -0.38 0.55 16 33 H 0.09 0.96 8.11 -51.93 -0.42 0.53 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 36 H 0.10 1.92 4.97 -51.93 -0.26 1.66 16 37 H 0.11 1.84 7.29 -51.93 -0.38 1.46 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.26 7.94 8.73 -40.82 -0.36 7.58 16 41 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 42 H 0.06 1.17 3.90 -51.93 -0.20 0.96 16 LS Contribution 332.37 15.07 5.01 5.01 Total: -1.00 -32.30 332.37 -6.09 -38.38 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.11 Total: -1.13 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 0.74 Total: 3.95 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.22 Total: -53.39 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.29 Total: -14.48 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -4.21 Total: 21.66 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.30 -6.09 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671111646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.538 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds