Wall clock time and date at job start Mon Mar 30 2020 01:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00388 * 2 1 4 4 C 1.53001 * 109.47283 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47444 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47393 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47205 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00131 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99991 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00068 * 0.02562 * 9 7 6 11 11 C 1.46498 * 120.00146 * 180.02562 * 9 7 6 12 12 C 1.53496 * 114.21138 * 119.99825 * 11 9 7 13 13 N 1.47070 * 87.98076 * 87.71671 * 12 11 9 14 14 C 1.36941 * 136.05440 * 207.08124 * 13 12 11 15 15 H 1.07997 * 120.00412 * 7.86028 * 14 13 12 16 16 C 1.38814 * 119.99634 * 187.85423 * 14 13 12 17 17 N 1.31616 * 119.99939 * 173.06607 * 16 14 13 18 18 Si 1.86796 * 120.00336 * 353.06587 * 16 14 13 19 19 H 1.48499 * 109.47209 * 175.20930 * 18 16 14 20 20 H 1.48510 * 109.47106 * 295.21158 * 18 16 14 21 21 H 1.48503 * 109.47106 * 55.20691 * 18 16 14 22 22 C 1.47063 * 87.88519 * 27.34830 * 13 12 11 23 23 H 1.09000 * 109.46824 * 300.00560 * 1 2 3 24 24 H 1.09003 * 109.46776 * 59.99604 * 1 2 3 25 25 H 1.08992 * 109.47721 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47405 * 59.99904 * 3 2 1 27 27 H 1.08994 * 109.47489 * 299.99754 * 3 2 1 28 28 H 1.09001 * 109.46866 * 60.00334 * 4 3 2 29 29 H 1.09000 * 109.47419 * 300.00625 * 4 3 2 30 30 H 1.09003 * 109.47393 * 60.00286 * 5 4 3 31 31 H 1.09007 * 109.47093 * 300.00264 * 5 4 3 32 32 H 1.09003 * 109.46933 * 59.99618 * 6 5 4 33 33 H 1.09000 * 109.46527 * 299.99870 * 6 5 4 34 34 H 1.08993 * 109.47136 * 270.00131 * 10 9 7 35 35 H 1.08998 * 109.46845 * 29.99973 * 10 9 7 36 36 H 1.09001 * 109.46872 * 149.99989 * 10 9 7 37 37 H 1.09007 * 113.27923 * 346.93027 * 11 9 7 38 38 H 1.09000 * 113.46265 * 332.94223 * 12 11 9 39 39 H 1.08991 * 113.52116 * 202.50467 * 12 11 9 40 40 H 0.97007 * 119.99810 * 1.51422 * 17 16 14 41 41 H 1.08997 * 113.47359 * 87.43609 * 22 13 12 42 42 H 1.09003 * 113.46485 * 217.88067 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1579 2.5821 0.0013 6 6 5.6832 2.4612 0.0013 7 6 6.2962 3.8379 0.0013 8 8 5.5834 4.8192 0.0018 9 7 7.6366 3.9787 0.0018 10 6 8.4976 2.7934 0.0018 11 6 8.2325 5.3169 0.0024 12 6 9.1276 5.6069 1.2152 13 7 10.2488 5.0262 0.4610 14 6 11.4237 4.3949 0.7711 15 1 11.6340 4.1170 1.7933 16 6 12.3444 4.1120 -0.2285 17 7 13.5287 3.6307 0.0846 18 14 11.9026 4.4144 -2.0181 19 1 13.0867 4.1446 -2.8727 20 1 10.7911 3.5120 -2.4129 21 1 11.4785 5.8270 -2.1914 22 6 9.5560 5.4280 -0.7724 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8900 27 1 1.6888 1.8463 -0.8899 28 1 3.8574 0.6434 -0.8892 29 1 3.8568 0.6436 0.8908 30 1 3.8360 3.1229 0.8913 31 1 3.8367 3.1233 -0.8887 32 1 6.0048 1.9206 -0.8889 33 1 6.0046 1.9199 0.8911 34 1 8.7108 2.4992 1.0294 35 1 7.9913 1.9765 -0.5124 36 1 9.4314 3.0227 -0.5116 37 1 7.5169 6.1074 -0.2241 38 1 8.8570 5.0329 2.1014 39 1 9.2483 6.6701 1.4224 40 1 13.7502 3.4530 1.0122 41 1 9.7891 6.4443 -1.0900 42 1 9.6503 4.7015 -1.5795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671111646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:03 Heat of formation + Delta-G solvation = -43.804952 kcal Electronic energy + Delta-G solvation = -20998.491395 eV Core-core repulsion = 17787.150800 eV Total energy + Delta-G solvation = -3211.340594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50416 -39.69013 -38.88177 -35.72170 -35.66940 -34.40365 -31.07821 -29.92529 -27.74567 -27.42000 -26.97399 -25.38797 -23.95810 -22.32003 -21.39170 -19.99755 -19.28433 -18.17653 -17.62120 -17.36896 -17.19590 -16.73929 -16.45437 -15.88724 -15.82055 -15.44291 -15.36264 -15.07129 -14.28016 -14.17635 -13.62180 -13.55496 -13.31507 -13.20110 -12.90141 -12.61092 -12.59631 -12.45611 -12.37439 -12.27268 -12.11539 -11.84576 -11.56771 -11.32118 -11.14852 -11.00589 -10.79674 -10.60158 -9.58480 -9.18150 -8.61898 -5.44462 1.39487 1.48433 1.60682 1.67906 1.97401 2.54852 2.83641 2.93393 3.25188 3.55159 3.66719 3.95109 3.99121 4.21885 4.26568 4.31351 4.34997 4.37362 4.45788 4.53999 4.56044 4.57778 4.63595 4.68546 4.75503 4.76375 4.79741 4.85832 4.87097 4.91913 5.01535 5.14140 5.20250 5.30972 5.40642 5.58883 5.96439 6.24699 6.48624 6.71589 7.16299 7.33928 8.28495 8.93215 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034738 B = 0.003414 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.840045 B = 8199.708277 C = 8467.791337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.057 3.943 4 C -0.112 4.112 5 C -0.092 4.092 6 C -0.132 4.132 7 C 0.511 3.489 8 O -0.581 6.581 9 N -0.589 5.589 10 C 0.087 3.913 11 C 0.115 3.885 12 C 0.109 3.891 13 N -0.649 5.649 14 C -0.280 4.280 15 H 0.049 0.951 16 C -0.080 4.080 17 N -0.971 5.971 18 Si 1.103 2.897 19 H -0.309 1.309 20 H -0.264 1.264 21 H -0.265 1.265 22 C 0.084 3.916 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.048 0.952 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.120 0.880 38 H 0.042 0.958 39 H 0.063 0.937 40 H 0.246 0.754 41 H 0.070 0.930 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.262 -4.908 -2.413 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.019 4.019 4 C -0.149 4.149 5 C -0.130 4.130 6 C -0.171 4.171 7 C 0.302 3.698 8 O -0.462 6.462 9 N -0.320 5.320 10 C -0.056 4.056 11 C 0.009 3.991 12 C -0.017 4.017 13 N -0.378 5.378 14 C -0.407 4.407 15 H 0.067 0.933 16 C -0.272 4.272 17 N -0.616 5.616 18 Si 0.930 3.070 19 H -0.238 1.238 20 H -0.190 1.190 21 H -0.190 1.190 22 C -0.041 4.041 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.137 0.863 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.739 -4.786 -3.863 24.523 hybrid contribution 0.169 0.456 2.154 2.209 sum -23.570 -4.329 -1.709 24.025 Atomic orbital electron populations 1.22912 0.79704 1.03744 1.00758 1.87821 1.21343 1.28993 1.95605 1.22612 0.94280 0.84208 1.00801 1.21450 0.92922 0.96778 1.03795 1.21140 0.92550 0.96358 1.02998 1.21733 0.96560 0.92491 1.06323 1.21370 0.80880 0.92938 0.74586 1.90640 1.61123 1.42343 1.52056 1.47558 1.06022 1.06506 1.71928 1.21826 0.95153 0.86522 1.02095 1.22288 0.93762 0.85941 0.97128 1.22943 0.85856 0.97447 0.95492 1.46127 1.21648 1.66293 1.03773 1.19857 0.93805 1.32433 0.94611 0.93337 1.26914 0.92303 0.99970 1.08044 1.71030 1.20488 1.50537 1.19582 0.83349 0.74275 0.77901 0.71499 1.23784 1.19040 1.19028 1.23347 0.89862 0.99346 0.91578 0.93358 0.93289 0.88579 0.92874 0.92704 0.90529 0.90780 0.91983 0.91679 0.86627 0.87183 0.93358 0.88352 0.92046 0.86255 0.93978 0.91911 0.94473 0.91286 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.75 10.70 -148.98 -1.59 -9.35 16 3 C 0.06 0.91 5.94 71.98 0.43 1.34 16 4 C -0.11 -1.73 5.58 30.59 0.17 -1.56 16 5 C -0.09 -1.68 4.50 30.59 0.14 -1.54 16 6 C -0.13 -2.53 4.25 29.85 0.13 -2.40 16 7 C 0.51 14.57 7.67 87.66 0.67 15.24 16 8 O -0.58 -19.92 15.49 -3.06 -0.05 -19.97 16 9 N -0.59 -18.45 3.12 -821.41 -2.56 -21.01 16 10 C 0.09 2.65 9.35 127.77 1.19 3.85 16 11 C 0.11 3.91 4.67 45.55 0.21 4.12 16 12 C 0.11 4.15 8.31 83.18 0.69 4.84 16 13 N -0.65 -29.81 2.40 -738.04 -1.77 -31.58 16 14 C -0.28 -15.52 10.70 84.03 0.90 -14.62 16 15 H 0.05 2.96 8.05 -2.91 -0.02 2.93 16 16 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 17 N -0.97 -61.32 13.71 21.65 0.30 -61.02 16 18 Si 1.10 51.46 24.77 68.60 1.70 53.16 16 19 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16 20 H -0.26 -10.94 6.53 99.48 0.65 -10.30 16 21 H -0.26 -11.27 6.16 99.48 0.61 -10.66 16 22 C 0.08 3.25 4.73 83.27 0.39 3.65 16 23 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 31 H 0.06 1.27 8.10 -2.38 -0.02 1.25 16 32 H 0.12 1.78 7.40 -2.39 -0.02 1.76 16 33 H 0.11 1.82 8.11 -2.39 -0.02 1.81 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 2.18 6.44 -2.39 -0.02 2.16 16 36 H 0.06 2.35 4.97 -2.39 -0.01 2.34 16 37 H 0.12 3.81 7.29 -2.38 -0.02 3.79 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 40 H 0.25 15.66 8.73 -92.70 -0.81 14.85 16 41 H 0.07 2.55 7.67 -2.39 -0.02 2.53 16 42 H 0.06 2.15 3.90 -2.39 -0.01 2.14 16 Total: -1.00 -70.53 332.37 3.45 -67.08 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.79 Total: 12.39 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 6.64 Total: 10.30 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -4.04 Total: -113.61 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.64 Total: -29.32 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 1.70 Total: 53.16 kcal Total: -70.53 3.45 -67.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671111646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.271 kcal (2) G-P(sol) polarization free energy of solvation -70.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds