Wall clock time and date at job start Mon Mar 30 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47055 * 2 1 4 4 C 1.42895 * 114.00049 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47287 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47599 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99598 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00298 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99988 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47604 * 324.99443 * 9 8 6 11 11 C 1.53001 * 109.47259 * 85.00250 * 9 8 6 12 12 C 1.53010 * 109.47213 * 204.99817 * 9 8 6 13 13 C 1.53943 * 113.74258 * 161.81902 * 12 9 8 14 14 N 1.47805 * 86.03770 * 222.08504 * 13 12 9 15 15 C 1.36938 * 134.45957 * 204.64203 * 14 13 12 16 16 H 1.08002 * 120.00181 * 179.86804 * 15 14 13 17 17 C 1.38813 * 119.99883 * 359.87569 * 15 14 13 18 18 N 1.31617 * 119.99718 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00182 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47146 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47538 * 119.99667 * 19 17 15 22 22 H 1.48498 * 109.47202 * 239.99721 * 19 17 15 23 23 C 1.47583 * 91.05211 * 24.55171 * 14 13 12 24 24 H 1.09003 * 109.46650 * 299.99635 * 1 2 3 25 25 H 1.08998 * 109.46819 * 60.00119 * 1 2 3 26 26 H 1.09000 * 109.46598 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47445 * 239.99968 * 2 1 3 28 28 H 1.08999 * 109.47340 * 119.99825 * 2 1 3 29 29 H 1.09007 * 109.46717 * 60.00885 * 4 3 2 30 30 H 1.08992 * 109.47813 * 300.00584 * 4 3 2 31 31 H 1.09008 * 109.46720 * 60.00528 * 5 4 3 32 32 H 1.09001 * 109.47630 * 300.01201 * 5 4 3 33 33 H 0.96997 * 119.99913 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.46872 * 180.02562 * 11 9 8 35 35 H 1.09000 * 109.46666 * 300.05986 * 11 9 8 36 36 H 1.08994 * 109.47515 * 60.06464 * 11 9 8 37 37 H 1.08998 * 112.94018 * 293.41905 * 12 9 8 38 38 H 1.09002 * 113.77396 * 336.35358 * 13 12 9 39 39 H 1.09001 * 113.76436 * 107.75150 * 13 12 9 40 40 H 0.97009 * 119.99737 * 180.02562 * 18 17 15 41 41 H 1.09004 * 113.76881 * 221.14971 * 23 14 13 42 42 H 1.09002 * 113.87061 * 89.76660 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9384 -0.0001 6 6 5.3276 3.0576 -0.0001 7 8 6.0151 2.0584 -0.0001 8 7 5.9072 4.2743 -0.0002 9 6 7.3676 4.3900 -0.0008 10 1 7.7966 3.5795 0.5884 11 6 7.8853 4.3052 -1.4380 12 6 7.7730 5.7335 0.6089 13 6 9.2422 5.7890 1.0651 14 7 8.7367 6.4919 2.2630 15 6 9.2832 7.3668 3.1637 16 1 8.6836 7.7503 3.9760 17 6 10.6077 7.7609 3.0325 18 7 11.3384 7.2932 2.0428 19 14 11.3534 8.9537 4.2615 20 1 10.3308 9.3276 5.2714 21 1 12.5069 8.3095 4.9394 22 1 11.8150 10.1729 3.5504 23 6 7.4065 5.8744 2.0974 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8339 0.9766 -0.8893 30 1 3.8333 0.9768 0.8907 31 1 3.4222 3.4225 0.8895 32 1 3.4229 3.4216 -0.8904 33 1 5.3573 5.0733 -0.0006 34 1 8.9720 4.3909 -1.4383 35 1 7.5956 3.3486 -1.8727 36 1 7.4574 5.1164 -2.0269 37 1 7.4701 6.5852 -0.0002 38 1 9.6732 4.8109 1.2789 39 1 9.8770 6.4050 0.4281 40 1 12.2642 7.5683 1.9513 41 1 6.5784 6.5585 2.2832 42 1 7.2951 4.9214 2.6147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675284820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:33 Heat of formation + Delta-G solvation = -44.518548 kcal Electronic energy + Delta-G solvation = -20572.359526 eV Core-core repulsion = 17360.987988 eV Total energy + Delta-G solvation = -3211.371538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91654 -38.36754 -37.84193 -34.81288 -32.79358 -32.13301 -30.96357 -29.74688 -27.47447 -24.97488 -24.31474 -23.49321 -23.04340 -21.15156 -20.24592 -19.04449 -17.43447 -16.83562 -16.63344 -16.05887 -15.99698 -15.25011 -14.83148 -14.53121 -14.13804 -13.84272 -13.76087 -13.45359 -13.13557 -12.67220 -12.42559 -12.24834 -12.03563 -11.94119 -11.58435 -11.40384 -11.32432 -11.27647 -11.21584 -10.89327 -10.67196 -10.33101 -10.07110 -9.83506 -9.80516 -9.61787 -9.41186 -8.84954 -8.78816 -6.87110 -5.76646 -3.08655 2.70712 2.98579 3.38954 3.44133 3.46812 3.74897 4.45414 4.65458 4.74486 4.85286 4.87208 5.01707 5.10448 5.14403 5.20489 5.31242 5.40727 5.44043 5.54867 5.56878 5.60712 5.65182 5.69045 5.80509 5.82750 6.01164 6.08297 6.28332 6.36372 6.45336 6.59925 6.63529 6.81409 6.94687 7.22918 7.36792 7.56351 7.63668 7.98577 8.31677 9.05109 9.71268 10.60510 11.40733 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039866 B = 0.002936 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.177251 B = 9535.200344 C = 9994.725838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.079 3.921 5 C -0.140 4.140 6 C 0.516 3.484 7 O -0.547 6.547 8 N -0.717 5.717 9 C 0.149 3.851 10 H 0.087 0.913 11 C -0.158 4.158 12 C -0.147 4.147 13 C 0.175 3.825 14 N -0.613 5.613 15 C -0.222 4.222 16 H 0.080 0.920 17 C -0.010 4.010 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.125 3.875 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.400 0.600 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.253 0.747 41 H 0.040 0.960 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.065 -10.456 -7.400 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.002 3.998 5 C -0.180 4.180 6 C 0.302 3.698 7 O -0.425 6.425 8 N -0.367 5.367 9 C 0.045 3.955 10 H 0.105 0.895 11 C -0.216 4.216 12 C -0.167 4.167 13 C 0.050 3.950 14 N -0.339 5.339 15 C -0.350 4.350 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C -0.001 4.001 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.234 0.766 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.046 0.954 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -17.420 -10.800 -7.242 21.738 hybrid contribution 0.441 0.749 0.743 1.144 sum -16.978 -10.051 -6.499 20.773 Atomic orbital electron populations 1.21750 0.93769 1.02210 1.03117 1.22442 0.95430 0.83668 1.00282 1.87801 1.21341 1.26676 1.95590 1.22108 0.80415 0.95583 1.01730 1.21482 0.92986 0.97993 1.05587 1.20329 0.89801 0.83666 0.76024 1.90707 1.65346 1.36468 1.50009 1.46120 1.08406 1.07738 1.74456 1.21124 0.78456 0.99165 0.96757 0.89496 1.22106 1.02027 1.01281 0.96174 1.23855 1.01720 0.94735 0.96382 1.22229 0.90164 0.94962 0.87690 1.46005 1.07890 1.48964 1.31050 1.19072 0.94406 1.16486 1.04992 0.90256 1.24790 0.96277 1.00694 0.98829 1.69822 1.07987 1.47209 1.31861 0.86048 0.79049 0.80370 0.80303 1.20488 1.21745 1.21702 1.22534 0.90135 0.95500 0.91909 0.91831 0.91875 0.91138 0.93354 0.93293 0.92497 0.92377 0.88038 0.88202 0.76631 0.91101 0.92871 0.92761 0.89322 0.95428 0.90698 0.93680 0.94133 0.95049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.39 -4.21 10.34 -35.23 -0.36 -4.57 16 4 C 0.08 0.84 5.23 37.16 0.19 1.04 16 5 C -0.14 -1.38 6.07 -27.88 -0.17 -1.55 16 6 C 0.52 6.79 7.79 -10.99 -0.09 6.70 16 7 O -0.55 -9.30 15.64 5.55 0.09 -9.21 16 8 N -0.72 -8.98 4.94 -53.81 -0.27 -9.24 16 9 C 0.15 2.28 2.29 -67.93 -0.16 2.13 16 10 H 0.09 1.55 7.48 -51.93 -0.39 1.16 16 11 C -0.16 -2.20 9.44 37.16 0.35 -1.85 16 12 C -0.15 -2.61 3.35 -89.69 -0.30 -2.91 16 13 C 0.18 4.07 6.98 -2.84 -0.02 4.05 16 14 N -0.61 -15.79 3.70 -177.72 -0.66 -16.45 16 15 C -0.22 -6.28 10.70 -15.06 -0.16 -6.45 16 16 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.92 -27.45 11.39 55.49 0.63 -26.82 16 19 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C 0.13 2.52 8.38 -2.96 -0.02 2.50 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.63 8.10 -51.92 -0.42 0.20 16 30 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.40 4.00 8.60 -40.82 -0.35 3.65 16 34 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 39 H 0.07 1.91 7.17 -51.93 -0.37 1.54 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 348.93 15.07 5.26 5.26 Total: -1.00 -33.19 348.93 -7.58 -40.77 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.41 Total: -0.39 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 0.16 Total: 3.41 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.29 Total: -52.51 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.28 Total: -13.78 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.19 -7.58 -40.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675284820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.753 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds