Wall clock time and date at job start Mon Mar 30 2020 01:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47055 * 2 1 4 4 C 1.42895 * 114.00049 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47287 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47599 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99598 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00298 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99988 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47604 * 324.99443 * 9 8 6 11 11 C 1.53001 * 109.47259 * 85.00250 * 9 8 6 12 12 C 1.53010 * 109.47213 * 204.99817 * 9 8 6 13 13 C 1.53943 * 113.74258 * 161.81902 * 12 9 8 14 14 N 1.47805 * 86.03770 * 222.08504 * 13 12 9 15 15 C 1.36938 * 134.45957 * 204.64203 * 14 13 12 16 16 H 1.08002 * 120.00181 * 179.86804 * 15 14 13 17 17 C 1.38813 * 119.99883 * 359.87569 * 15 14 13 18 18 N 1.31617 * 119.99718 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00182 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47146 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47538 * 119.99667 * 19 17 15 22 22 H 1.48498 * 109.47202 * 239.99721 * 19 17 15 23 23 C 1.47583 * 91.05211 * 24.55171 * 14 13 12 24 24 H 1.09003 * 109.46650 * 299.99635 * 1 2 3 25 25 H 1.08998 * 109.46819 * 60.00119 * 1 2 3 26 26 H 1.09000 * 109.46598 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47445 * 239.99968 * 2 1 3 28 28 H 1.08999 * 109.47340 * 119.99825 * 2 1 3 29 29 H 1.09007 * 109.46717 * 60.00885 * 4 3 2 30 30 H 1.08992 * 109.47813 * 300.00584 * 4 3 2 31 31 H 1.09008 * 109.46720 * 60.00528 * 5 4 3 32 32 H 1.09001 * 109.47630 * 300.01201 * 5 4 3 33 33 H 0.96997 * 119.99913 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.46872 * 180.02562 * 11 9 8 35 35 H 1.09000 * 109.46666 * 300.05986 * 11 9 8 36 36 H 1.08994 * 109.47515 * 60.06464 * 11 9 8 37 37 H 1.08998 * 112.94018 * 293.41905 * 12 9 8 38 38 H 1.09002 * 113.77396 * 336.35358 * 13 12 9 39 39 H 1.09001 * 113.76436 * 107.75150 * 13 12 9 40 40 H 0.97009 * 119.99737 * 180.02562 * 18 17 15 41 41 H 1.09004 * 113.76881 * 221.14971 * 23 14 13 42 42 H 1.09002 * 113.87061 * 89.76660 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9384 -0.0001 6 6 5.3276 3.0576 -0.0001 7 8 6.0151 2.0584 -0.0001 8 7 5.9072 4.2743 -0.0002 9 6 7.3676 4.3900 -0.0008 10 1 7.7966 3.5795 0.5884 11 6 7.8853 4.3052 -1.4380 12 6 7.7730 5.7335 0.6089 13 6 9.2422 5.7890 1.0651 14 7 8.7367 6.4919 2.2630 15 6 9.2832 7.3668 3.1637 16 1 8.6836 7.7503 3.9760 17 6 10.6077 7.7609 3.0325 18 7 11.3384 7.2932 2.0428 19 14 11.3534 8.9537 4.2615 20 1 10.3308 9.3276 5.2714 21 1 12.5069 8.3095 4.9394 22 1 11.8150 10.1729 3.5504 23 6 7.4065 5.8744 2.0974 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8339 0.9766 -0.8893 30 1 3.8333 0.9768 0.8907 31 1 3.4222 3.4225 0.8895 32 1 3.4229 3.4216 -0.8904 33 1 5.3573 5.0733 -0.0006 34 1 8.9720 4.3909 -1.4383 35 1 7.5956 3.3486 -1.8727 36 1 7.4574 5.1164 -2.0269 37 1 7.4701 6.5852 -0.0002 38 1 9.6732 4.8109 1.2789 39 1 9.8770 6.4050 0.4281 40 1 12.2642 7.5683 1.9513 41 1 6.5784 6.5585 2.2832 42 1 7.2951 4.9214 2.6147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675284820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:32 Heat of formation + Delta-G solvation = -67.432958 kcal Electronic energy + Delta-G solvation = -20573.353169 eV Core-core repulsion = 17360.987988 eV Total energy + Delta-G solvation = -3212.365182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.09256 -39.74129 -38.83850 -36.18262 -34.16988 -33.53235 -32.00777 -30.70966 -29.31618 -26.62529 -25.82303 -24.77624 -23.66071 -22.61645 -21.39019 -20.58041 -18.78794 -18.36528 -17.45830 -17.27559 -17.01760 -16.80010 -16.15387 -15.83904 -15.38660 -15.24590 -14.87369 -14.67463 -14.44173 -14.03905 -13.43664 -13.27904 -13.19480 -13.08154 -12.97472 -12.94035 -12.71181 -12.64722 -12.34423 -12.01470 -11.99316 -11.97618 -11.80475 -11.57436 -11.22034 -10.88447 -10.83479 -10.58534 -10.01785 -8.92740 -7.91432 -5.24932 1.45054 1.46286 1.56476 1.67186 2.02674 2.46747 2.89584 3.29119 3.39189 3.69292 3.83075 3.98911 4.06632 4.15292 4.19296 4.28898 4.40412 4.46394 4.50868 4.55139 4.58581 4.77825 4.77919 4.85860 4.87116 4.87898 4.94668 4.97080 5.05959 5.12055 5.24979 5.29574 5.31460 5.53450 5.57304 5.66012 5.93645 6.20699 6.63154 6.91549 7.31028 7.60114 8.55877 9.25839 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039866 B = 0.002936 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.177251 B = 9535.200344 C = 9994.725838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.404 6.404 4 C 0.080 3.920 5 C -0.129 4.129 6 C 0.516 3.484 7 O -0.589 6.589 8 N -0.706 5.706 9 C 0.161 3.839 10 H 0.059 0.941 11 C -0.151 4.151 12 C -0.108 4.108 13 C 0.169 3.831 14 N -0.645 5.645 15 C -0.234 4.234 16 H 0.084 0.916 17 C -0.070 4.070 18 N -0.954 5.954 19 Si 0.980 3.020 20 H -0.265 1.265 21 H -0.295 1.295 22 H -0.289 1.289 23 C 0.127 3.873 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.417 0.583 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.010 0.990 39 H 0.046 0.954 40 H 0.249 0.751 41 H 0.063 0.937 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.377 -9.897 -7.585 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.324 6.324 4 C 0.003 3.997 5 C -0.169 4.169 6 C 0.304 3.696 7 O -0.470 6.470 8 N -0.358 5.358 9 C 0.055 3.945 10 H 0.077 0.923 11 C -0.210 4.210 12 C -0.128 4.128 13 C 0.043 3.957 14 N -0.372 5.372 15 C -0.363 4.363 16 H 0.102 0.898 17 C -0.263 4.263 18 N -0.603 5.603 19 Si 0.808 3.192 20 H -0.189 1.189 21 H -0.222 1.222 22 H -0.216 1.216 23 C 0.003 3.997 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.028 0.972 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -19.798 -10.232 -7.426 23.490 hybrid contribution 1.111 0.500 0.810 1.463 sum -18.687 -9.731 -6.616 22.083 Atomic orbital electron populations 1.21760 0.92397 1.03421 1.02920 1.22673 0.96590 0.82807 1.00724 1.87780 1.20942 1.28086 1.95617 1.22036 0.80678 0.96147 1.00872 1.21428 0.90063 0.97755 1.07611 1.20885 0.91091 0.82885 0.74743 1.90700 1.66576 1.37884 1.51856 1.45911 1.07135 1.08599 1.74108 1.20737 0.80288 0.96425 0.97006 0.92275 1.22037 1.01529 1.02090 0.95309 1.23447 0.97063 0.96711 0.95560 1.22138 0.93091 0.93203 0.87221 1.46453 1.10313 1.49166 1.31255 1.19477 0.94805 1.16666 1.05322 0.89841 1.25660 0.96913 1.02885 1.00847 1.70011 1.07897 1.48788 1.33644 0.84993 0.78049 0.77939 0.78239 1.18879 1.22183 1.21634 1.22684 0.88499 0.95388 0.93177 0.92120 0.91922 0.89278 0.92773 0.93057 0.93152 0.93632 0.86254 0.85694 0.74637 0.92061 0.92908 0.90657 0.87553 0.97218 0.93549 0.94243 0.91843 0.95040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 71.98 0.74 -0.94 16 2 C 0.05 0.73 6.66 71.98 0.48 1.21 16 3 O -0.40 -7.94 10.34 -148.98 -1.54 -9.48 16 4 C 0.08 1.61 5.23 71.98 0.38 1.98 16 5 C -0.13 -2.19 6.07 29.85 0.18 -2.01 16 6 C 0.52 12.64 7.79 87.66 0.68 13.32 16 7 O -0.59 -19.75 15.64 -3.04 -0.05 -19.80 16 8 N -0.71 -15.96 4.94 -442.53 -2.19 -18.15 16 9 C 0.16 4.74 2.29 45.00 0.10 4.84 16 10 H 0.06 2.12 7.48 -2.39 -0.02 2.10 16 11 C -0.15 -4.03 9.44 71.98 0.68 -3.35 16 12 C -0.11 -3.70 3.35 -10.13 -0.03 -3.74 16 13 C 0.17 8.03 6.98 86.44 0.60 8.63 16 14 N -0.65 -33.31 3.70 -716.17 -2.65 -35.97 16 15 C -0.23 -13.29 10.70 84.03 0.90 -12.39 16 16 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 17 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 18 N -0.95 -58.24 11.39 21.65 0.25 -57.99 16 19 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 C 0.13 4.95 8.38 86.49 0.72 5.67 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 30 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 31 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.42 6.78 8.60 -92.71 -0.80 5.98 16 34 H 0.06 1.75 8.09 -2.38 -0.02 1.73 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.01 0.50 8.03 -2.39 -0.02 0.48 16 39 H 0.05 2.45 7.17 -2.39 -0.02 2.43 16 40 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.03 1.25 8.10 -2.39 -0.02 1.23 16 Total: -1.00 -72.82 348.93 1.93 -70.89 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.18 Total: 12.71 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.90 Total: 9.64 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -4.59 Total: -112.10 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -1.59 Total: -29.28 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -72.82 1.93 -70.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675284820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.455 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds