Wall clock time and date at job start Mon Mar 30 2020 01:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36930 * 120.00028 * 2 1 4 4 H 1.07995 * 120.00419 * 202.93072 * 3 2 1 5 5 C 1.38817 * 120.00151 * 22.92635 * 3 2 1 6 6 N 1.31621 * 119.99634 * 13.11733 * 5 3 2 7 7 Si 1.86798 * 120.00285 * 193.11716 * 5 3 2 8 8 H 1.48500 * 109.47149 * 89.99602 * 7 5 3 9 9 H 1.48501 * 109.47179 * 210.00064 * 7 5 3 10 10 H 1.48497 * 109.47002 * 330.00014 * 7 5 3 11 11 C 1.46496 * 119.99604 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46993 * 90.00466 * 11 2 1 13 13 H 1.08995 * 109.46947 * 304.99431 * 12 11 2 14 14 O 1.42900 * 109.47330 * 64.99882 * 12 11 2 15 15 C 1.53002 * 109.46924 * 184.99545 * 12 11 2 16 16 N 1.46505 * 109.46975 * 179.97438 * 15 12 11 17 17 C 1.46508 * 119.99908 * 269.99843 * 16 15 12 18 18 C 1.34775 * 120.00252 * 90.00034 * 16 15 12 19 19 O 1.21281 * 119.99549 * 0.02562 * 18 16 15 20 20 C 1.50701 * 119.99896 * 179.97438 * 18 16 15 21 21 C 1.53002 * 109.46590 * 179.97438 * 20 18 16 22 22 C 1.52998 * 117.49994 * 243.62139 * 21 20 18 23 23 C 1.53003 * 117.49412 * 174.99897 * 21 20 18 24 24 H 1.09002 * 109.47393 * 275.12793 * 1 2 3 25 25 H 1.09000 * 109.47364 * 35.13156 * 1 2 3 26 26 H 1.09001 * 109.47376 * 155.12399 * 1 2 3 27 27 H 0.97001 * 119.99914 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.47573 * 330.00084 * 11 2 1 29 29 H 1.09001 * 109.46936 * 209.99955 * 11 2 1 30 30 H 0.96698 * 114.00157 * 59.99763 * 14 12 11 31 31 H 1.09006 * 109.47217 * 60.00003 * 15 12 11 32 32 H 1.08995 * 109.47215 * 299.99722 * 15 12 11 33 33 H 1.08994 * 109.46966 * 270.00255 * 17 16 15 34 34 H 1.09006 * 109.46688 * 30.00311 * 17 16 15 35 35 H 1.08991 * 109.46940 * 149.99757 * 17 16 15 36 36 H 1.08994 * 109.47043 * 60.00509 * 20 18 16 37 37 H 1.08999 * 109.46912 * 299.99580 * 20 18 16 38 38 H 1.09006 * 115.55172 * 29.33436 * 21 20 18 39 39 H 1.09000 * 117.49724 * 359.97438 * 22 21 20 40 40 H 1.08991 * 117.49968 * 145.02563 * 22 21 20 41 41 H 1.09004 * 117.49753 * 214.97803 * 23 21 20 42 42 H 1.08999 * 117.49893 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1656 1.2229 -0.3644 5 6 1.5378 2.3406 0.4683 6 7 0.4116 2.2606 1.1448 7 14 2.3128 4.0079 0.1384 8 1 1.7940 4.5501 -1.1430 9 1 1.9728 4.9393 1.2440 10 1 3.7879 3.8597 0.0520 11 6 2.1974 -1.2687 0.0006 12 6 2.4524 -1.7110 -1.4418 13 1 1.5062 -1.7557 -1.9807 14 8 3.3210 -0.7734 -2.0810 15 6 3.1060 -3.0944 -1.4430 16 7 3.3497 -3.5182 -2.8240 17 6 2.3247 -4.2718 -3.5507 18 6 4.5167 -3.2148 -3.4261 19 8 5.3653 -2.5913 -2.8244 20 6 4.7675 -3.6512 -4.8466 21 6 6.1558 -3.1821 -5.2865 22 6 6.2299 -2.1749 -6.4358 23 6 6.6485 -3.6287 -6.6645 24 1 -0.3634 0.0919 1.0235 25 1 -0.3634 0.8404 -0.5914 26 1 -0.3634 -0.9323 -0.4323 27 1 -0.0161 3.0675 1.4717 28 1 1.6083 -2.0282 0.5147 29 1 3.1498 -1.1382 0.5143 30 1 4.1836 -0.6818 -1.6539 31 1 2.4435 -3.8097 -0.9553 32 1 4.0523 -3.0497 -0.9040 33 1 2.4757 -5.3391 -3.3892 34 1 1.3376 -3.9854 -3.1878 35 1 2.3983 -4.0514 -4.6155 36 1 4.0126 -3.2135 -5.4998 37 1 4.7146 -4.7382 -4.9074 38 1 6.8962 -3.0944 -4.4914 39 1 5.2896 -1.8468 -6.8788 40 1 7.0190 -1.4242 -6.3969 41 1 7.7131 -3.8342 -6.7761 42 1 5.9834 -4.2563 -7.2577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677142089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:28 Heat of formation + Delta-G solvation = -35.672301 kcal Electronic energy + Delta-G solvation = -21505.451910 eV Core-core repulsion = 18294.463973 eV Total energy + Delta-G solvation = -3210.987936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.96518 -37.62856 -36.77759 -35.25804 -34.43640 -31.36229 -30.41491 -28.79832 -26.95089 -25.85955 -25.10445 -22.50887 -22.20758 -20.78801 -20.39254 -19.07646 -17.16298 -16.75041 -16.26707 -16.05052 -15.29744 -14.91652 -14.78225 -14.49837 -14.04310 -13.73332 -13.32126 -13.22267 -13.07781 -12.76336 -12.52624 -12.31199 -11.83606 -11.65646 -11.62089 -11.36602 -10.98931 -10.78732 -10.57779 -10.50851 -10.47626 -10.32353 -10.13492 -9.88602 -9.82647 -9.66033 -9.49158 -8.54535 -8.28945 -6.60736 -5.61187 -3.06349 2.78553 3.06359 3.47625 3.53237 3.55810 3.68470 4.45775 4.57735 4.60177 4.77827 4.93719 4.99367 5.09070 5.16301 5.30897 5.33158 5.38468 5.47154 5.51113 5.52615 5.55385 5.61340 5.76889 5.79585 5.93393 5.97354 6.04296 6.13365 6.19834 6.52452 6.61136 6.74467 6.85263 7.42074 7.47339 7.77144 7.95717 8.33409 8.46265 8.55086 9.34631 9.96950 10.45354 11.44090 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022405 B = 0.004468 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.446433 B = 6265.973656 C = 7147.986734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.594 5.594 3 C -0.237 4.237 4 H 0.070 0.930 5 C -0.005 4.005 6 N -0.914 5.914 7 Si 0.905 3.095 8 H -0.290 1.290 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.125 3.875 12 C 0.073 3.927 13 H 0.083 0.917 14 O -0.542 6.542 15 C 0.081 3.919 16 N -0.612 5.612 17 C 0.079 3.921 18 C 0.521 3.479 19 O -0.533 6.533 20 C -0.108 4.108 21 C -0.138 4.138 22 C -0.176 4.176 23 C -0.184 4.184 24 H 0.031 0.969 25 H 0.040 0.960 26 H -0.006 1.006 27 H 0.250 0.750 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.368 0.632 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.933 -16.587 -12.429 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.316 5.316 3 C -0.367 4.367 4 H 0.088 0.912 5 C -0.202 4.202 6 N -0.560 5.560 7 Si 0.735 3.265 8 H -0.217 1.217 9 H -0.220 1.220 10 H -0.205 1.205 11 C -0.004 4.004 12 C 0.009 3.991 13 H 0.101 0.899 14 O -0.346 6.346 15 C -0.043 4.043 16 N -0.345 5.345 17 C -0.065 4.065 18 C 0.309 3.691 19 O -0.410 6.410 20 C -0.147 4.147 21 C -0.156 4.156 22 C -0.213 4.213 23 C -0.221 4.221 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.012 0.988 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.215 0.785 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.748 -16.044 -12.409 21.082 hybrid contribution 0.489 0.817 0.142 0.963 sum 6.237 -15.227 -12.267 20.524 Atomic orbital electron populations 1.20792 0.82784 0.95189 0.99389 1.43749 1.01622 1.00519 1.85677 1.19221 0.98217 0.85354 1.33863 0.91234 1.25001 0.98080 0.98474 0.98605 1.70073 1.19758 1.26915 1.39301 0.86234 0.78805 0.84224 0.77189 1.21689 1.21989 1.20501 1.21337 0.96846 0.89359 0.92877 1.23136 0.92848 0.85750 0.97366 0.89861 1.86541 1.28817 1.62982 1.56226 1.22376 1.02119 0.97868 0.81895 1.47745 1.16332 1.55920 1.14535 1.21771 0.92135 0.95430 0.97132 1.20391 0.81263 0.79048 0.88410 1.90646 1.44676 1.39587 1.66058 1.21227 0.97167 1.02064 0.94274 1.22053 0.97576 1.03776 0.92225 1.23016 1.03305 0.92485 1.02503 1.22994 1.01585 0.98072 0.99423 0.95056 0.94121 0.98755 0.93996 0.94033 0.93093 0.78516 0.90329 0.89849 0.92801 0.90898 0.91246 0.88988 0.89012 0.86444 0.88845 0.88742 0.88837 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.12 8.98 59.85 0.54 4.66 16 2 N -0.59 -15.30 2.90 -181.12 -0.53 -15.83 16 3 C -0.24 -6.75 9.21 -15.06 -0.14 -6.89 16 4 H 0.07 1.98 7.58 -52.49 -0.40 1.58 16 5 C 0.00 -0.13 5.10 -17.43 -0.09 -0.22 16 6 N -0.91 -27.56 10.71 55.49 0.59 -26.97 16 7 Si 0.90 23.04 29.57 -169.99 -5.03 18.02 16 8 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 9 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 11 C 0.12 2.54 5.32 -4.04 -0.02 2.52 16 12 C 0.07 1.30 3.48 -26.73 -0.09 1.20 16 13 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 14 O -0.54 -11.25 11.38 -43.94 -0.50 -11.75 16 15 C 0.08 1.13 5.15 -4.04 -0.02 1.11 16 16 N -0.61 -7.77 2.83 -181.56 -0.51 -8.28 16 17 C 0.08 0.69 10.24 59.85 0.61 1.30 16 18 C 0.52 7.29 7.18 -10.99 -0.08 7.21 16 19 O -0.53 -9.38 13.93 -3.15 -0.04 -9.42 16 20 C -0.11 -1.10 4.54 -27.88 -0.13 -1.23 16 21 C -0.14 -1.50 5.41 -90.62 -0.49 -1.99 16 22 C -0.18 -1.78 10.18 -26.73 -0.27 -2.05 16 23 C -0.18 -1.56 10.25 -26.73 -0.27 -1.83 16 24 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 25 H 0.04 1.11 7.34 -51.93 -0.38 0.73 16 26 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 27 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 29 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 30 H 0.37 7.38 8.45 45.56 0.39 7.77 16 31 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.08 1.25 7.42 -51.93 -0.39 0.86 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 35 H 0.07 0.51 6.44 -51.93 -0.33 0.17 16 36 H 0.09 0.86 7.13 -51.93 -0.37 0.49 16 37 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 38 H 0.12 1.50 7.30 -51.93 -0.38 1.12 16 39 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -33.98 342.15 -7.74 -41.72 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.42 Total: 3.57 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.45 Total: 3.78 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.44 Total: -51.07 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.54 Total: -21.17 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.03 Total: 18.02 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.98 -7.74 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677142089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.046 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds