Wall clock time and date at job start Mon Mar 30 2020 01:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36930 * 120.00028 * 2 1 4 4 H 1.07995 * 120.00419 * 202.93072 * 3 2 1 5 5 C 1.38817 * 120.00151 * 22.92635 * 3 2 1 6 6 N 1.31621 * 119.99634 * 13.11733 * 5 3 2 7 7 Si 1.86798 * 120.00285 * 193.11716 * 5 3 2 8 8 H 1.48500 * 109.47149 * 89.99602 * 7 5 3 9 9 H 1.48501 * 109.47179 * 210.00064 * 7 5 3 10 10 H 1.48497 * 109.47002 * 330.00014 * 7 5 3 11 11 C 1.46496 * 119.99604 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46993 * 90.00466 * 11 2 1 13 13 H 1.08995 * 109.46947 * 304.99431 * 12 11 2 14 14 O 1.42900 * 109.47330 * 64.99882 * 12 11 2 15 15 C 1.53002 * 109.46924 * 184.99545 * 12 11 2 16 16 N 1.46505 * 109.46975 * 179.97438 * 15 12 11 17 17 C 1.46508 * 119.99908 * 269.99843 * 16 15 12 18 18 C 1.34775 * 120.00252 * 90.00034 * 16 15 12 19 19 O 1.21281 * 119.99549 * 0.02562 * 18 16 15 20 20 C 1.50701 * 119.99896 * 179.97438 * 18 16 15 21 21 C 1.53002 * 109.46590 * 179.97438 * 20 18 16 22 22 C 1.52998 * 117.49994 * 243.62139 * 21 20 18 23 23 C 1.53003 * 117.49412 * 174.99897 * 21 20 18 24 24 H 1.09002 * 109.47393 * 275.12793 * 1 2 3 25 25 H 1.09000 * 109.47364 * 35.13156 * 1 2 3 26 26 H 1.09001 * 109.47376 * 155.12399 * 1 2 3 27 27 H 0.97001 * 119.99914 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.47573 * 330.00084 * 11 2 1 29 29 H 1.09001 * 109.46936 * 209.99955 * 11 2 1 30 30 H 0.96698 * 114.00157 * 59.99763 * 14 12 11 31 31 H 1.09006 * 109.47217 * 60.00003 * 15 12 11 32 32 H 1.08995 * 109.47215 * 299.99722 * 15 12 11 33 33 H 1.08994 * 109.46966 * 270.00255 * 17 16 15 34 34 H 1.09006 * 109.46688 * 30.00311 * 17 16 15 35 35 H 1.08991 * 109.46940 * 149.99757 * 17 16 15 36 36 H 1.08994 * 109.47043 * 60.00509 * 20 18 16 37 37 H 1.08999 * 109.46912 * 299.99580 * 20 18 16 38 38 H 1.09006 * 115.55172 * 29.33436 * 21 20 18 39 39 H 1.09000 * 117.49724 * 359.97438 * 22 21 20 40 40 H 1.08991 * 117.49968 * 145.02563 * 22 21 20 41 41 H 1.09004 * 117.49753 * 214.97803 * 23 21 20 42 42 H 1.08999 * 117.49893 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1656 1.2229 -0.3644 5 6 1.5378 2.3406 0.4683 6 7 0.4116 2.2606 1.1448 7 14 2.3128 4.0079 0.1384 8 1 1.7940 4.5501 -1.1430 9 1 1.9728 4.9393 1.2440 10 1 3.7879 3.8597 0.0520 11 6 2.1974 -1.2687 0.0006 12 6 2.4524 -1.7110 -1.4418 13 1 1.5062 -1.7557 -1.9807 14 8 3.3210 -0.7734 -2.0810 15 6 3.1060 -3.0944 -1.4430 16 7 3.3497 -3.5182 -2.8240 17 6 2.3247 -4.2718 -3.5507 18 6 4.5167 -3.2148 -3.4261 19 8 5.3653 -2.5913 -2.8244 20 6 4.7675 -3.6512 -4.8466 21 6 6.1558 -3.1821 -5.2865 22 6 6.2299 -2.1749 -6.4358 23 6 6.6485 -3.6287 -6.6645 24 1 -0.3634 0.0919 1.0235 25 1 -0.3634 0.8404 -0.5914 26 1 -0.3634 -0.9323 -0.4323 27 1 -0.0161 3.0675 1.4717 28 1 1.6083 -2.0282 0.5147 29 1 3.1498 -1.1382 0.5143 30 1 4.1836 -0.6818 -1.6539 31 1 2.4435 -3.8097 -0.9553 32 1 4.0523 -3.0497 -0.9040 33 1 2.4757 -5.3391 -3.3892 34 1 1.3376 -3.9854 -3.1878 35 1 2.3983 -4.0514 -4.6155 36 1 4.0126 -3.2135 -5.4998 37 1 4.7146 -4.7382 -4.9074 38 1 6.8962 -3.0944 -4.4914 39 1 5.2896 -1.8468 -6.8788 40 1 7.0190 -1.4242 -6.3969 41 1 7.7131 -3.8342 -6.7761 42 1 5.9834 -4.2563 -7.2577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677142089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:27 Heat of formation + Delta-G solvation = -58.687108 kcal Electronic energy + Delta-G solvation = -21506.449906 eV Core-core repulsion = 18294.463973 eV Total energy + Delta-G solvation = -3211.985933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01141 -38.90950 -37.87130 -36.70142 -35.98978 -33.32438 -31.68420 -30.00391 -28.07228 -27.80737 -26.51193 -23.82223 -23.20539 -22.17061 -21.67896 -20.05268 -18.82221 -18.05209 -17.61582 -17.13118 -16.81397 -16.41207 -16.07553 -15.85644 -15.32445 -15.12096 -14.78663 -14.72459 -14.11082 -14.01194 -13.72301 -13.35023 -13.19300 -13.05222 -12.81708 -12.66291 -12.51471 -12.35077 -12.25219 -12.18903 -12.07398 -11.88086 -11.81140 -11.26479 -11.16621 -10.91653 -10.68432 -10.55083 -9.51609 -8.66847 -7.80059 -5.27077 1.43284 1.45269 1.53853 1.76425 2.12434 2.51867 2.93685 3.31999 3.54791 3.66408 3.79514 3.81213 4.03922 4.08440 4.19884 4.26150 4.31205 4.48250 4.55686 4.61025 4.65753 4.72693 4.74960 4.81075 4.81427 4.86539 4.94639 4.97157 5.06317 5.26401 5.27676 5.35527 5.37308 5.59955 5.66681 5.72091 6.35912 6.51123 6.93266 7.18804 7.32818 7.90086 8.31817 9.22513 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022405 B = 0.004468 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.446433 B = 6265.973656 C = 7147.986734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.613 5.613 3 C -0.240 4.240 4 H 0.064 0.936 5 C -0.059 4.059 6 N -0.942 5.942 7 Si 0.963 3.037 8 H -0.291 1.291 9 H -0.292 1.292 10 H -0.273 1.273 11 C 0.122 3.878 12 C 0.083 3.917 13 H 0.079 0.921 14 O -0.563 6.563 15 C 0.091 3.909 16 N -0.613 5.613 17 C 0.071 3.929 18 C 0.508 3.492 19 O -0.581 6.581 20 C -0.097 4.097 21 C -0.158 4.158 22 C -0.191 4.191 23 C -0.157 4.157 24 H 0.007 0.993 25 H 0.009 0.991 26 H 0.034 0.966 27 H 0.246 0.754 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.367 0.633 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 -18.769 -14.074 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.335 5.335 3 C -0.371 4.371 4 H 0.082 0.918 5 C -0.253 4.253 6 N -0.590 5.590 7 Si 0.792 3.208 8 H -0.218 1.218 9 H -0.219 1.219 10 H -0.198 1.198 11 C -0.005 4.005 12 C 0.021 3.979 13 H 0.097 0.903 14 O -0.368 6.368 15 C -0.033 4.033 16 N -0.345 5.345 17 C -0.071 4.071 18 C 0.298 3.702 19 O -0.460 6.460 20 C -0.137 4.137 21 C -0.177 4.177 22 C -0.228 4.228 23 C -0.193 4.193 24 H 0.025 0.975 25 H 0.027 0.973 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.214 0.786 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.124 0.876 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.665 -18.284 -14.082 23.764 hybrid contribution 0.526 1.414 0.641 1.639 sum 6.191 -16.871 -13.442 22.441 Atomic orbital electron populations 1.20544 0.82799 0.95853 0.97657 1.43993 1.01997 1.01602 1.85932 1.19439 0.98119 0.86805 1.32748 0.91787 1.25698 0.98911 1.01540 0.99159 1.70216 1.20973 1.27247 1.40576 0.85313 0.78308 0.80477 0.76669 1.21835 1.21888 1.19751 1.21550 0.96312 0.87852 0.94831 1.22958 0.92631 0.87443 0.94894 0.90328 1.86506 1.29075 1.64304 1.56867 1.22113 1.01704 0.96121 0.83334 1.47874 1.16889 1.55650 1.14127 1.22073 0.90959 0.96422 0.97651 1.21165 0.81037 0.78304 0.89705 1.90626 1.46310 1.41740 1.67368 1.21241 0.96882 1.03882 0.91656 1.22001 0.97726 1.05447 0.92506 1.23086 1.03511 0.93488 1.02722 1.23084 1.02482 0.96654 0.97126 0.97455 0.97252 0.94728 0.94483 0.91374 0.93850 0.78594 0.87061 0.91158 0.90126 0.90605 0.89624 0.87620 0.85968 0.89227 0.88403 0.89589 0.88116 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.89 8.98 127.77 1.15 10.03 16 2 N -0.61 -31.50 2.90 -726.95 -2.11 -33.61 16 3 C -0.24 -13.85 9.21 84.04 0.77 -13.08 16 4 H 0.06 3.69 7.58 -2.91 -0.02 3.67 16 5 C -0.06 -3.48 5.10 84.86 0.43 -3.04 16 6 N -0.94 -57.82 10.71 21.65 0.23 -57.59 16 7 Si 0.96 48.05 29.57 68.60 2.03 50.08 16 8 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 9 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 10 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 11 C 0.12 4.83 5.32 86.38 0.46 5.29 16 12 C 0.08 2.88 3.48 30.60 0.11 2.98 16 13 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 14 O -0.56 -23.44 11.38 -140.65 -1.60 -25.04 16 15 C 0.09 2.37 5.15 86.38 0.44 2.82 16 16 N -0.61 -14.09 2.83 -846.73 -2.39 -16.48 16 17 C 0.07 0.96 10.24 127.77 1.31 2.27 16 18 C 0.51 13.58 7.18 87.66 0.63 14.21 16 19 O -0.58 -20.71 13.93 5.30 0.07 -20.63 16 20 C -0.10 -1.75 4.54 29.85 0.14 -1.62 16 21 C -0.16 -3.27 5.41 -10.79 -0.06 -3.33 16 22 C -0.19 -3.67 10.18 30.59 0.31 -3.36 16 23 C -0.16 -2.27 10.25 30.60 0.31 -1.96 16 24 H 0.01 0.39 7.34 -2.39 -0.02 0.38 16 25 H 0.01 0.49 7.34 -2.39 -0.02 0.47 16 26 H 0.03 1.43 8.03 -2.39 -0.02 1.41 16 27 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 29 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16 30 H 0.37 15.16 8.45 -74.06 -0.63 14.53 16 31 H 0.11 2.17 8.07 -2.38 -0.02 2.15 16 32 H 0.07 2.04 7.42 -2.39 -0.02 2.03 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 1.01 8.07 -2.38 -0.02 1.00 16 35 H 0.09 0.90 6.44 -2.39 -0.02 0.88 16 36 H 0.11 1.63 7.13 -2.39 -0.02 1.61 16 37 H 0.12 1.43 8.11 -2.39 -0.02 1.41 16 38 H 0.09 2.36 7.30 -2.38 -0.02 2.34 16 39 H 0.10 1.76 8.03 -2.39 -0.02 1.74 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -75.32 342.15 2.60 -72.72 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.37 Total: 19.35 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 6.00 Total: 11.20 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -4.27 Total: -107.68 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -1.53 Total: -45.67 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -75.32 2.60 -72.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677142089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.030 kcal (2) G-P(sol) polarization free energy of solvation -75.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds