Wall clock time and date at job start Mon Mar 30 2020 01:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00024 * 2 1 4 4 C 1.53000 * 109.47509 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47710 * 185.29565 * 4 3 2 6 6 C 1.50698 * 115.54663 * 295.15599 * 5 4 3 7 7 O 1.21283 * 120.00100 * 116.06100 * 6 5 4 8 8 N 1.34770 * 120.00136 * 295.78579 * 6 5 4 9 9 C 1.46501 * 120.00371 * 175.50888 * 8 6 5 10 10 C 1.52998 * 109.47527 * 180.02562 * 9 8 6 11 11 N 1.46507 * 109.47220 * 180.02562 * 10 9 8 12 12 C 1.46495 * 119.99774 * 269.99867 * 11 10 9 13 13 C 1.36934 * 119.99972 * 89.99608 * 11 10 9 14 14 H 1.07998 * 120.00230 * 22.74376 * 13 11 10 15 15 C 1.38812 * 119.99670 * 202.73387 * 13 11 10 16 16 N 1.31619 * 120.00228 * 12.98164 * 15 13 11 17 17 Si 1.86803 * 119.99763 * 192.97170 * 15 13 11 18 18 H 1.48498 * 109.47041 * 60.00776 * 17 15 13 19 19 H 1.48497 * 109.46908 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47225 * 300.00666 * 17 15 13 21 21 C 1.53001 * 117.49901 * 80.82170 * 5 4 3 22 22 C 1.52997 * 117.50044 * 149.48622 * 5 4 3 23 23 H 1.09000 * 109.46972 * 60.00057 * 1 2 3 24 24 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47262 * 300.00212 * 1 2 3 26 26 H 1.09003 * 109.47174 * 59.99832 * 3 2 1 27 27 H 1.08996 * 109.47361 * 300.00229 * 3 2 1 28 28 H 1.09003 * 109.47098 * 65.29074 * 4 3 2 29 29 H 1.09006 * 109.46900 * 305.29958 * 4 3 2 30 30 H 0.97001 * 120.00155 * 355.50710 * 8 6 5 31 31 H 1.09006 * 109.46816 * 300.00355 * 9 8 6 32 32 H 1.09000 * 109.46992 * 59.99438 * 9 8 6 33 33 H 1.09003 * 109.47017 * 299.99503 * 10 9 8 34 34 H 1.08993 * 109.47382 * 59.99967 * 10 9 8 35 35 H 1.08998 * 109.47620 * 95.10732 * 12 11 10 36 36 H 1.08995 * 109.47341 * 215.11004 * 12 11 10 37 37 H 1.09010 * 109.47233 * 335.10496 * 12 11 10 38 38 H 0.96997 * 119.99945 * 179.97438 * 16 15 13 39 39 H 1.08994 * 117.49679 * 215.00630 * 21 5 4 40 40 H 1.09002 * 117.49654 * 0.02980 * 21 5 4 41 41 H 1.09003 * 117.49742 * 359.97315 * 22 5 4 42 42 H 1.09001 * 117.49804 * 144.97518 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1573 2.5763 0.1338 6 6 3.9028 3.5146 -1.0176 7 8 3.2621 4.5295 -0.8426 8 7 4.3919 3.2290 -2.2405 9 6 4.0627 4.0885 -3.3803 10 6 4.7391 3.5457 -4.6407 11 7 4.4104 4.4057 -5.7803 12 6 3.2240 4.1240 -6.5922 13 6 5.2121 5.4727 -6.0866 14 1 6.2416 5.4859 -5.7604 15 6 4.7016 6.5374 -6.8164 16 7 3.4025 6.6500 -6.9952 17 14 5.8584 7.8107 -7.5445 18 1 6.7955 7.1470 -8.4861 19 1 5.0698 8.8374 -8.2718 20 1 6.6295 8.4599 -6.4541 21 6 4.2363 3.1835 1.5359 22 6 5.5073 2.6816 0.8459 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8641 0.7276 -0.9327 29 1 3.8504 0.5642 0.8397 30 1 4.9619 2.4542 -2.3661 31 1 2.9824 4.1019 -3.5252 32 1 4.4156 5.1013 -3.1855 33 1 5.8194 3.5321 -4.4960 34 1 4.3858 2.5332 -4.8353 35 1 2.3875 4.7239 -6.2337 36 1 3.4290 4.3722 -7.6335 37 1 2.9726 3.0662 -6.5135 38 1 3.0458 7.3942 -7.5049 39 1 4.1043 4.2617 1.6255 40 1 3.8457 2.5914 2.3635 41 1 5.9523 1.7596 1.2200 42 1 6.2116 3.4295 0.4814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690946500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:45 Heat of formation + Delta-G solvation = -41.409060 kcal Electronic energy + Delta-G solvation = -20978.629478 eV Core-core repulsion = 17767.392777 eV Total energy + Delta-G solvation = -3211.236701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.08054 -38.03060 -36.84039 -35.90730 -34.09888 -31.37913 -31.12905 -28.29000 -26.70768 -25.87818 -24.45676 -23.27961 -22.60475 -21.92467 -20.63608 -19.16209 -17.06032 -16.72261 -16.55150 -16.07404 -15.59192 -15.21513 -15.04865 -14.70986 -14.54748 -14.01409 -13.51030 -13.40100 -13.26888 -12.53909 -12.33920 -12.26508 -12.22536 -11.70587 -11.68489 -11.38610 -11.22879 -10.88675 -10.83516 -10.66362 -10.61106 -10.32083 -10.18750 -10.01554 -9.89747 -9.83017 -9.50396 -8.63333 -8.55597 -6.82205 -5.74840 -3.22476 2.78004 3.26275 3.38598 3.42976 3.44533 3.47910 3.75785 4.48844 4.52200 4.67897 4.73372 4.83762 4.99637 5.11597 5.18927 5.30209 5.34799 5.40063 5.45045 5.46971 5.60493 5.63468 5.74040 5.81249 5.83799 5.87846 5.98099 6.01273 6.27618 6.68481 6.71668 6.74233 6.95814 6.98406 7.33514 7.70761 7.78842 7.83509 8.36433 8.51923 9.20184 9.82501 10.30886 11.29993 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022840 B = 0.003882 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.631978 B = 7211.626687 C = 7921.857888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.062 3.938 4 C -0.071 4.071 5 C -0.160 4.160 6 C 0.541 3.459 7 O -0.539 6.539 8 N -0.719 5.719 9 C 0.094 3.906 10 C 0.144 3.856 11 N -0.596 5.596 12 C 0.161 3.839 13 C -0.263 4.263 14 H 0.069 0.931 15 C 0.005 3.995 16 N -0.905 5.905 17 Si 0.907 3.093 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 C -0.146 4.146 22 C -0.154 4.154 23 H 0.043 0.957 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.396 0.604 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.044 0.956 37 H -0.001 1.001 38 H 0.254 0.746 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 -13.329 15.111 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.015 4.015 4 C -0.109 4.109 5 C -0.163 4.163 6 C 0.326 3.674 7 O -0.416 6.416 8 N -0.369 5.369 9 C -0.031 4.031 10 C 0.016 3.984 11 N -0.318 5.318 12 C 0.017 3.983 13 C -0.392 4.392 14 H 0.087 0.913 15 C -0.194 4.194 16 N -0.549 5.549 17 Si 0.736 3.264 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.209 1.209 21 C -0.184 4.184 22 C -0.191 4.191 23 H 0.061 0.939 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.229 0.771 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.018 0.982 38 H 0.064 0.936 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.690 -12.611 15.045 19.643 hybrid contribution 0.446 0.760 -0.466 0.997 sum -0.244 -11.851 14.579 18.790 Atomic orbital electron populations 1.22733 0.80888 1.02594 1.00230 1.87810 1.19867 1.28132 1.95523 1.22493 0.93632 0.84387 1.00978 1.20914 0.93190 0.92828 1.03929 1.21423 1.03731 0.96936 0.94234 1.19453 0.79382 0.85465 0.83111 1.90712 1.40440 1.26648 1.83789 1.46141 1.51395 1.30931 1.08432 1.22540 1.00730 0.94898 0.84943 1.20997 0.97691 0.93451 0.86292 1.43914 1.29273 1.31204 1.27412 1.20843 0.89122 0.92951 0.95411 1.19174 0.92103 0.95874 1.32062 0.91276 1.25059 0.95602 0.97221 1.01508 1.70057 1.10138 1.31537 1.43176 0.86306 0.79951 0.80998 0.79100 1.20986 1.21570 1.20861 1.23014 1.00304 1.02139 0.92907 1.23097 0.90027 1.03695 1.02279 0.93861 0.89656 0.94120 0.92920 0.93015 0.90211 0.90063 0.77067 0.92335 0.91283 0.93304 0.93962 0.95037 0.93764 0.98242 0.93568 0.87698 0.88004 0.87753 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.66 10.70 -35.23 -0.38 -5.04 16 3 C 0.06 0.72 5.73 37.16 0.21 0.93 16 4 C -0.07 -0.72 5.46 -26.73 -0.15 -0.87 16 5 C -0.16 -1.84 1.91 -155.66 -0.30 -2.13 16 6 C 0.54 8.66 6.57 -10.99 -0.07 8.59 16 7 O -0.54 -11.10 16.67 5.55 0.09 -11.01 16 8 N -0.72 -11.04 5.55 -60.29 -0.33 -11.38 16 9 C 0.09 1.86 6.00 -4.04 -0.02 1.84 16 10 C 0.14 2.86 5.82 -4.04 -0.02 2.84 16 11 N -0.60 -14.96 2.92 -181.12 -0.53 -15.49 16 12 C 0.16 3.99 9.02 59.84 0.54 4.52 16 13 C -0.26 -7.23 9.66 -15.06 -0.15 -7.37 16 14 H 0.07 1.85 7.85 -52.49 -0.41 1.43 16 15 C 0.01 0.14 5.10 -17.43 -0.09 0.05 16 16 N -0.90 -26.61 10.69 55.49 0.59 -26.01 16 17 Si 0.91 21.96 29.57 -169.99 -5.03 16.93 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.15 -1.51 9.77 -26.69 -0.26 -1.77 16 22 C -0.15 -1.42 9.93 -26.69 -0.26 -1.68 16 23 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.69 7.87 -51.93 -0.41 0.29 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.40 4.80 8.48 -40.82 -0.35 4.46 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 34 H 0.04 0.74 7.86 -51.93 -0.41 0.34 16 35 H 0.03 0.85 7.35 -51.93 -0.38 0.46 16 36 H 0.04 1.16 7.32 -51.93 -0.38 0.78 16 37 H 0.00 -0.02 7.84 -51.92 -0.41 -0.43 16 38 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.10 1.25 7.97 -51.93 -0.41 0.83 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -32.82 351.80 -7.10 -39.92 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.36 Total: 0.42 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 0.54 Total: 6.36 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.27 Total: -52.88 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.28 Total: -16.05 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.82 -7.10 -39.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690946500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.492 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds