Wall clock time and date at job start Mon Mar 30 2020 01:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00024 * 2 1 4 4 C 1.53000 * 109.47509 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47710 * 185.29565 * 4 3 2 6 6 C 1.50698 * 115.54663 * 295.15599 * 5 4 3 7 7 O 1.21283 * 120.00100 * 116.06100 * 6 5 4 8 8 N 1.34770 * 120.00136 * 295.78579 * 6 5 4 9 9 C 1.46501 * 120.00371 * 175.50888 * 8 6 5 10 10 C 1.52998 * 109.47527 * 180.02562 * 9 8 6 11 11 N 1.46507 * 109.47220 * 180.02562 * 10 9 8 12 12 C 1.46495 * 119.99774 * 269.99867 * 11 10 9 13 13 C 1.36934 * 119.99972 * 89.99608 * 11 10 9 14 14 H 1.07998 * 120.00230 * 22.74376 * 13 11 10 15 15 C 1.38812 * 119.99670 * 202.73387 * 13 11 10 16 16 N 1.31619 * 120.00228 * 12.98164 * 15 13 11 17 17 Si 1.86803 * 119.99763 * 192.97170 * 15 13 11 18 18 H 1.48498 * 109.47041 * 60.00776 * 17 15 13 19 19 H 1.48497 * 109.46908 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47225 * 300.00666 * 17 15 13 21 21 C 1.53001 * 117.49901 * 80.82170 * 5 4 3 22 22 C 1.52997 * 117.50044 * 149.48622 * 5 4 3 23 23 H 1.09000 * 109.46972 * 60.00057 * 1 2 3 24 24 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47262 * 300.00212 * 1 2 3 26 26 H 1.09003 * 109.47174 * 59.99832 * 3 2 1 27 27 H 1.08996 * 109.47361 * 300.00229 * 3 2 1 28 28 H 1.09003 * 109.47098 * 65.29074 * 4 3 2 29 29 H 1.09006 * 109.46900 * 305.29958 * 4 3 2 30 30 H 0.97001 * 120.00155 * 355.50710 * 8 6 5 31 31 H 1.09006 * 109.46816 * 300.00355 * 9 8 6 32 32 H 1.09000 * 109.46992 * 59.99438 * 9 8 6 33 33 H 1.09003 * 109.47017 * 299.99503 * 10 9 8 34 34 H 1.08993 * 109.47382 * 59.99967 * 10 9 8 35 35 H 1.08998 * 109.47620 * 95.10732 * 12 11 10 36 36 H 1.08995 * 109.47341 * 215.11004 * 12 11 10 37 37 H 1.09010 * 109.47233 * 335.10496 * 12 11 10 38 38 H 0.96997 * 119.99945 * 179.97438 * 16 15 13 39 39 H 1.08994 * 117.49679 * 215.00630 * 21 5 4 40 40 H 1.09002 * 117.49654 * 0.02980 * 21 5 4 41 41 H 1.09003 * 117.49742 * 359.97315 * 22 5 4 42 42 H 1.09001 * 117.49804 * 144.97518 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1573 2.5763 0.1338 6 6 3.9028 3.5146 -1.0176 7 8 3.2621 4.5295 -0.8426 8 7 4.3919 3.2290 -2.2405 9 6 4.0627 4.0885 -3.3803 10 6 4.7391 3.5457 -4.6407 11 7 4.4104 4.4057 -5.7803 12 6 3.2240 4.1240 -6.5922 13 6 5.2121 5.4727 -6.0866 14 1 6.2416 5.4859 -5.7604 15 6 4.7016 6.5374 -6.8164 16 7 3.4025 6.6500 -6.9952 17 14 5.8584 7.8107 -7.5445 18 1 6.7955 7.1470 -8.4861 19 1 5.0698 8.8374 -8.2718 20 1 6.6295 8.4599 -6.4541 21 6 4.2363 3.1835 1.5359 22 6 5.5073 2.6816 0.8459 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8641 0.7276 -0.9327 29 1 3.8504 0.5642 0.8397 30 1 4.9619 2.4542 -2.3661 31 1 2.9824 4.1019 -3.5252 32 1 4.4156 5.1013 -3.1855 33 1 5.8194 3.5321 -4.4960 34 1 4.3858 2.5332 -4.8353 35 1 2.3875 4.7239 -6.2337 36 1 3.4290 4.3722 -7.6335 37 1 2.9726 3.0662 -6.5135 38 1 3.0458 7.3942 -7.5049 39 1 4.1043 4.2617 1.6255 40 1 3.8457 2.5914 2.3635 41 1 5.9523 1.7596 1.2200 42 1 6.2116 3.4295 0.4814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690946500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:45 Heat of formation + Delta-G solvation = -64.353297 kcal Electronic energy + Delta-G solvation = -20979.624414 eV Core-core repulsion = 17767.392777 eV Total energy + Delta-G solvation = -3212.231638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.26637 -38.97896 -38.07832 -37.48766 -35.73436 -33.29056 -32.01702 -29.98207 -27.95208 -27.48197 -25.86011 -24.44962 -23.58805 -23.06343 -22.40051 -20.43136 -18.79799 -18.02819 -17.42617 -17.21654 -16.84489 -16.70074 -16.44574 -15.98098 -15.67913 -15.55195 -15.04993 -14.89012 -14.30993 -14.21729 -14.07334 -13.45430 -13.15769 -13.07232 -12.77972 -12.66788 -12.52576 -12.48428 -12.42394 -12.19677 -12.13057 -12.03399 -11.80235 -11.52453 -11.07448 -10.80526 -10.68931 -10.67266 -10.10954 -8.88215 -7.86744 -5.37032 1.45771 1.47851 1.53229 1.54709 2.10380 2.49538 2.52809 2.91723 3.28311 3.59522 3.70087 3.85744 3.92018 3.93789 4.14262 4.19881 4.27505 4.32000 4.47542 4.48919 4.55785 4.62730 4.75002 4.78767 4.81494 4.84529 4.97797 5.00243 5.03290 5.06389 5.15063 5.22775 5.28057 5.44687 5.61228 5.68496 6.12787 6.28867 6.57631 7.10395 7.25538 7.81179 8.23966 9.16644 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022840 B = 0.003882 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.631978 B = 7211.626687 C = 7921.857888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.062 3.938 4 C -0.063 4.063 5 C -0.168 4.168 6 C 0.537 3.463 7 O -0.593 6.593 8 N -0.705 5.705 9 C 0.116 3.884 10 C 0.147 3.853 11 N -0.614 5.614 12 C 0.174 3.826 13 C -0.271 4.271 14 H 0.076 0.924 15 C -0.053 4.053 16 N -0.939 5.939 17 Si 0.971 3.029 18 H -0.273 1.273 19 H -0.295 1.295 20 H -0.277 1.277 21 C -0.150 4.150 22 C -0.128 4.128 23 H 0.036 0.964 24 H 0.105 0.895 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.023 0.977 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.416 0.584 31 H 0.031 0.969 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.000 1.000 36 H 0.020 0.980 37 H 0.037 0.963 38 H 0.248 0.752 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.141 0.859 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 -15.667 16.532 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.015 4.015 4 C -0.100 4.100 5 C -0.171 4.171 6 C 0.325 3.675 7 O -0.474 6.474 8 N -0.356 5.356 9 C -0.011 4.011 10 C 0.020 3.980 11 N -0.337 5.337 12 C 0.029 3.971 13 C -0.401 4.401 14 H 0.094 0.906 15 C -0.248 4.248 16 N -0.585 5.585 17 Si 0.799 3.201 18 H -0.198 1.198 19 H -0.222 1.222 20 H -0.203 1.203 21 C -0.187 4.187 22 C -0.165 4.165 23 H 0.055 0.945 24 H 0.124 0.876 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.104 0.896 29 H 0.127 0.873 30 H 0.253 0.747 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.018 0.982 36 H 0.038 0.962 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.099 0.901 40 H 0.147 0.853 41 H 0.159 0.841 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.151 -15.013 16.490 22.330 hybrid contribution -0.147 1.433 -0.834 1.664 sum 1.004 -13.581 15.656 20.750 Atomic orbital electron populations 1.22927 0.79782 1.04031 1.00417 1.87784 1.21185 1.27960 1.95521 1.22481 0.95006 0.84306 0.99717 1.20911 0.91673 0.91980 1.05428 1.21284 1.06568 0.96616 0.92682 1.20313 0.77855 0.85346 0.84019 1.90688 1.42679 1.29336 1.84669 1.45871 1.51564 1.30837 1.07358 1.21929 0.98735 0.93679 0.86742 1.21137 0.98645 0.93814 0.84396 1.44166 1.28927 1.31270 1.29309 1.20601 0.88151 0.94496 0.93868 1.19571 0.92805 0.96351 1.31382 0.90610 1.25866 0.96982 0.99468 1.02476 1.70241 1.11844 1.32136 1.44272 0.85288 0.78043 0.78433 0.78361 1.19840 1.22164 1.20292 1.23111 1.01477 1.01259 0.92853 1.23256 0.88722 1.04768 0.99770 0.94492 0.87639 0.93174 0.92777 0.95829 0.89649 0.87319 0.74656 0.95075 0.95338 0.91629 0.90712 0.98214 0.96151 0.94461 0.94244 0.90074 0.85349 0.84145 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -8.88 10.70 -148.98 -1.59 -10.47 16 3 C 0.06 1.36 5.73 71.98 0.41 1.78 16 4 C -0.06 -1.09 5.46 30.59 0.17 -0.92 16 5 C -0.17 -3.52 1.91 -52.93 -0.10 -3.62 16 6 C 0.54 17.14 6.57 87.66 0.58 17.72 16 7 O -0.59 -25.43 16.67 -3.04 -0.05 -25.48 16 8 N -0.70 -21.14 5.55 -463.06 -2.57 -23.71 16 9 C 0.12 4.66 6.00 86.38 0.52 5.18 16 10 C 0.15 5.65 5.82 86.38 0.50 6.15 16 11 N -0.61 -30.81 2.92 -726.94 -2.12 -32.94 16 12 C 0.17 8.68 9.02 127.77 1.15 9.84 16 13 C -0.27 -14.96 9.66 84.03 0.81 -14.15 16 14 H 0.08 3.99 7.85 -2.91 -0.02 3.97 16 15 C -0.05 -3.00 5.10 84.86 0.43 -2.56 16 16 N -0.94 -56.91 10.69 21.65 0.23 -56.68 16 17 Si 0.97 45.60 29.57 68.60 2.03 47.63 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 C -0.15 -2.76 9.77 30.62 0.30 -2.46 16 22 C -0.13 -1.91 9.93 30.62 0.30 -1.61 16 23 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.02 0.64 7.87 -2.39 -0.02 0.62 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.11 1.38 8.09 -2.38 -0.02 1.36 16 30 H 0.42 9.09 8.48 -92.71 -0.79 8.31 16 31 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 2.32 8.03 -2.39 -0.02 2.30 16 34 H 0.07 2.42 7.86 -2.39 -0.02 2.40 16 35 H 0.00 -0.03 7.35 -2.39 -0.02 -0.04 16 36 H 0.02 1.07 7.32 -2.39 -0.02 1.06 16 37 H 0.04 1.54 7.84 -2.38 -0.02 1.52 16 38 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.08 1.91 7.97 -2.39 -0.02 1.89 16 40 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -74.27 351.80 2.44 -71.82 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.20 Total: 12.84 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.32 Total: 16.99 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -4.46 Total: -113.33 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -1.65 Total: -35.95 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.27 2.44 -71.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690946500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.470 kcal (2) G-P(sol) polarization free energy of solvation -74.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds