Wall clock time and date at job start Mon Mar 30 2020 00:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46860 * 2 1 4 4 C 1.36942 * 120.00077 * 275.30397 * 3 2 1 5 5 H 1.08003 * 119.99353 * 37.58591 * 4 3 2 6 6 C 1.38809 * 120.00519 * 217.58447 * 4 3 2 7 7 N 1.31619 * 119.99827 * 21.41959 * 6 4 3 8 8 Si 1.86794 * 119.99924 * 201.42564 * 6 4 3 9 9 H 1.48503 * 109.47518 * 59.99993 * 8 6 4 10 10 H 1.48504 * 109.46890 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47358 * 299.99710 * 8 6 4 12 12 C 1.46505 * 120.00333 * 95.31070 * 3 2 1 13 13 C 1.52999 * 109.46866 * 269.99602 * 12 3 2 14 14 N 1.46497 * 109.47100 * 179.97438 * 13 12 3 15 15 C 1.34768 * 120.00254 * 180.02562 * 14 13 12 16 16 O 1.21287 * 120.00040 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00186 * 179.72983 * 15 14 13 18 18 C 1.53001 * 109.47197 * 180.27568 * 17 15 14 19 19 O 1.42900 * 112.84986 * 53.80348 * 18 17 15 20 20 C 1.53781 * 113.61683 * 282.49440 * 18 17 15 21 21 C 1.53778 * 87.08398 * 220.01932 * 20 18 17 22 22 C 1.53780 * 87.07956 * 25.43166 * 21 20 18 23 23 H 1.09000 * 109.46968 * 300.00291 * 1 2 3 24 24 H 1.08993 * 109.47071 * 59.99962 * 1 2 3 25 25 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47558 * 240.00178 * 2 1 3 27 27 H 1.09003 * 109.47193 * 119.99511 * 2 1 3 28 28 H 0.97005 * 119.99619 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46864 * 149.99695 * 12 3 2 30 30 H 1.09001 * 109.46795 * 29.99708 * 12 3 2 31 31 H 1.08998 * 109.46910 * 60.00007 * 13 12 3 32 32 H 1.08993 * 109.47507 * 299.99983 * 13 12 3 33 33 H 0.97005 * 119.99938 * 0.02562 * 14 13 12 34 34 H 1.08997 * 109.46925 * 300.27380 * 17 15 14 35 35 H 1.08995 * 109.47254 * 60.27649 * 17 15 14 36 36 H 0.96702 * 114.00182 * 309.66508 * 19 18 17 37 37 H 1.08999 * 113.61027 * 334.57315 * 20 18 17 38 38 H 1.09007 * 113.60943 * 105.46888 * 20 18 17 39 39 H 1.09005 * 113.61411 * 270.88572 * 21 20 18 40 40 H 1.08998 * 113.69130 * 139.99077 * 21 20 18 41 41 H 1.09001 * 113.61205 * 220.01825 * 22 21 20 42 42 H 1.09005 * 113.61411 * 89.11656 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1431 2.0634 -1.1809 5 1 1.4105 1.9278 -1.9627 6 6 3.2112 2.9289 -1.3730 7 7 4.3026 2.7981 -0.6491 8 14 3.0993 4.2794 -2.6586 9 1 1.9627 5.1785 -2.3347 10 1 4.3618 5.0613 -2.6662 11 1 2.8844 3.6724 -3.9968 12 6 2.3732 2.0328 1.2633 13 6 1.1425 2.7384 1.8364 14 7 1.4972 3.3895 3.1000 15 6 0.5646 4.0760 3.7893 16 8 -0.5685 4.1545 3.3639 17 6 0.9279 4.7406 5.0922 18 6 -0.3043 5.4410 5.6685 19 8 -1.4303 4.5700 5.7927 20 6 -0.6301 6.7781 4.9824 21 6 -0.9652 7.3239 6.3804 22 6 -0.0119 6.2549 6.9400 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.0488 3.4033 -0.7831 29 1 3.1616 2.7642 1.0859 30 1 2.7255 1.2835 1.9721 31 1 0.3541 2.0070 2.0138 32 1 0.7902 3.4877 1.1276 33 1 2.4033 3.3264 3.4405 34 1 1.2814 3.9885 5.7974 35 1 1.7150 5.4744 4.9186 36 1 -1.6335 4.0727 4.9886 37 1 0.2355 7.2555 4.5231 38 1 -1.4908 6.7282 4.3153 39 1 -2.0057 7.1753 6.6693 40 1 -0.6216 8.3450 6.5459 41 1 -0.3734 5.7826 7.8535 42 1 1.0228 6.5893 7.0161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691017330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:34 Heat of formation + Delta-G solvation = -56.080725 kcal Electronic energy + Delta-G solvation = -21374.767380 eV Core-core repulsion = 18162.894468 eV Total energy + Delta-G solvation = -3211.872912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.31583 -38.50011 -36.33796 -34.54243 -34.00972 -31.92763 -30.83726 -29.32932 -27.36916 -25.79568 -24.39824 -23.40297 -21.71766 -20.51372 -20.02428 -19.64293 -17.11768 -16.53475 -16.42986 -15.70003 -15.47402 -15.08980 -14.78257 -14.71490 -14.04984 -13.78844 -13.54006 -13.12899 -12.93002 -12.49924 -12.41919 -12.27465 -12.04652 -11.58075 -11.54203 -11.25560 -11.15485 -10.92130 -10.78733 -10.69049 -10.56870 -10.46593 -10.12865 -9.93483 -9.86497 -9.64878 -9.47241 -8.64415 -8.50656 -6.66846 -5.88086 -3.46838 2.81729 3.32332 3.38316 3.42207 3.48170 4.09047 4.42257 4.49515 4.59346 4.64735 4.77884 5.17264 5.23803 5.26756 5.40154 5.50581 5.55049 5.60885 5.65985 5.81177 5.95119 6.05105 6.06450 6.11925 6.19331 6.28635 6.35161 6.37964 6.46527 6.64958 6.78608 6.88160 6.96496 7.13014 7.48163 7.75986 7.80422 7.85676 8.43232 8.49641 9.10289 9.72118 10.30142 11.12123 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.004418 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.671025 B = 6335.947213 C = 7053.805864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.263 4.263 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.138 3.862 13 C 0.095 3.905 14 N -0.716 5.716 15 C 0.510 3.490 16 O -0.553 6.553 17 C -0.165 4.165 18 C 0.130 3.870 19 O -0.551 6.551 20 C -0.162 4.162 21 C -0.135 4.135 22 C -0.128 4.128 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.256 0.744 29 H 0.098 0.902 30 H 0.028 0.972 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.399 0.601 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.391 0.609 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 4.383 13.225 14.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.392 4.392 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.205 1.205 12 C 0.010 3.990 13 C -0.030 4.030 14 N -0.366 5.366 15 C 0.296 3.704 16 O -0.433 6.433 17 C -0.206 4.206 18 C 0.088 3.912 19 O -0.364 6.364 20 C -0.200 4.200 21 C -0.173 4.173 22 C -0.166 4.166 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.232 0.768 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.247 0.753 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.771 4.699 13.435 15.011 hybrid contribution 0.471 0.499 -1.135 1.326 sum -4.301 5.199 12.300 14.029 Atomic orbital electron populations 1.22385 0.99886 0.99109 1.01376 1.20883 0.91779 0.86951 0.98905 1.43609 1.76067 1.08297 1.02068 1.18994 1.04821 1.21392 0.94019 0.92098 1.25176 0.94105 1.01179 0.98127 1.69988 1.03149 1.37326 1.42545 0.86464 0.76966 0.82283 0.81674 1.20805 1.21553 1.20542 1.21055 0.94545 0.96947 0.86457 1.22495 1.01154 0.96593 0.82748 1.46189 1.13202 1.52617 1.24574 1.20594 0.85540 0.78646 0.85597 1.90525 1.20709 1.61882 1.70233 1.22363 1.00629 1.01925 0.95651 1.21747 0.85087 0.88444 0.95901 1.86289 1.47722 1.59380 1.43025 1.23571 1.02518 0.96843 0.97023 1.22741 0.99981 0.97975 0.96559 1.23060 1.00159 0.96278 0.97072 0.93706 0.93103 0.94418 0.93556 0.94744 0.93449 0.88430 0.95330 0.92913 0.91709 0.76798 0.88292 0.87937 0.75337 0.89832 0.90581 0.89952 0.91546 0.90635 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 10.21 37.16 0.38 -2.70 16 2 C 0.14 2.92 6.44 -4.04 -0.03 2.89 16 3 N -0.58 -13.91 2.43 -173.23 -0.42 -14.33 16 4 C -0.26 -6.99 9.45 -15.06 -0.14 -7.13 16 5 H 0.06 1.63 7.92 -52.48 -0.42 1.22 16 6 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 7 N -0.89 -24.42 11.47 55.49 0.64 -23.79 16 8 Si 0.90 21.16 29.60 -169.99 -5.03 16.13 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.14 2.99 5.45 -4.04 -0.02 2.96 16 13 C 0.10 1.87 6.00 -4.04 -0.02 1.85 16 14 N -0.72 -11.29 5.56 -60.30 -0.33 -11.62 16 15 C 0.51 7.86 7.59 -10.99 -0.08 7.77 16 16 O -0.55 -10.26 13.59 -14.27 -0.19 -10.45 16 17 C -0.17 -1.88 5.34 -27.88 -0.15 -2.03 16 18 C 0.13 1.61 1.10 -89.81 -0.10 1.51 16 19 O -0.55 -8.12 13.39 -55.05 -0.74 -8.86 16 20 C -0.16 -1.95 7.17 -25.92 -0.19 -2.14 16 21 C -0.14 -1.38 8.02 -25.92 -0.21 -1.59 16 22 C -0.13 -1.26 7.47 -25.92 -0.19 -1.46 16 23 H 0.04 0.83 6.64 -51.93 -0.34 0.48 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 27 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.10 2.38 5.52 -51.93 -0.29 2.10 16 30 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 31 H 0.05 1.06 6.64 -51.93 -0.34 0.72 16 32 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.40 5.25 8.47 -40.82 -0.35 4.91 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 36 H 0.39 6.03 6.19 45.56 0.28 6.31 16 37 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -29.75 339.35 -8.27 -38.02 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.46 Total: 9.54 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.84 Total: 0.25 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.12 Total: -49.73 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.93 Total: -19.31 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.75 -8.27 -38.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691017330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.058 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds