Wall clock time and date at job start Mon Mar 30 2020 00:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46860 * 2 1 4 4 C 1.36942 * 120.00077 * 275.30397 * 3 2 1 5 5 H 1.08003 * 119.99353 * 37.58591 * 4 3 2 6 6 C 1.38809 * 120.00519 * 217.58447 * 4 3 2 7 7 N 1.31619 * 119.99827 * 21.41959 * 6 4 3 8 8 Si 1.86794 * 119.99924 * 201.42564 * 6 4 3 9 9 H 1.48503 * 109.47518 * 59.99993 * 8 6 4 10 10 H 1.48504 * 109.46890 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47358 * 299.99710 * 8 6 4 12 12 C 1.46505 * 120.00333 * 95.31070 * 3 2 1 13 13 C 1.52999 * 109.46866 * 269.99602 * 12 3 2 14 14 N 1.46497 * 109.47100 * 179.97438 * 13 12 3 15 15 C 1.34768 * 120.00254 * 180.02562 * 14 13 12 16 16 O 1.21287 * 120.00040 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00186 * 179.72983 * 15 14 13 18 18 C 1.53001 * 109.47197 * 180.27568 * 17 15 14 19 19 O 1.42900 * 112.84986 * 53.80348 * 18 17 15 20 20 C 1.53781 * 113.61683 * 282.49440 * 18 17 15 21 21 C 1.53778 * 87.08398 * 220.01932 * 20 18 17 22 22 C 1.53780 * 87.07956 * 25.43166 * 21 20 18 23 23 H 1.09000 * 109.46968 * 300.00291 * 1 2 3 24 24 H 1.08993 * 109.47071 * 59.99962 * 1 2 3 25 25 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47558 * 240.00178 * 2 1 3 27 27 H 1.09003 * 109.47193 * 119.99511 * 2 1 3 28 28 H 0.97005 * 119.99619 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46864 * 149.99695 * 12 3 2 30 30 H 1.09001 * 109.46795 * 29.99708 * 12 3 2 31 31 H 1.08998 * 109.46910 * 60.00007 * 13 12 3 32 32 H 1.08993 * 109.47507 * 299.99983 * 13 12 3 33 33 H 0.97005 * 119.99938 * 0.02562 * 14 13 12 34 34 H 1.08997 * 109.46925 * 300.27380 * 17 15 14 35 35 H 1.08995 * 109.47254 * 60.27649 * 17 15 14 36 36 H 0.96702 * 114.00182 * 309.66508 * 19 18 17 37 37 H 1.08999 * 113.61027 * 334.57315 * 20 18 17 38 38 H 1.09007 * 113.60943 * 105.46888 * 20 18 17 39 39 H 1.09005 * 113.61411 * 270.88572 * 21 20 18 40 40 H 1.08998 * 113.69130 * 139.99077 * 21 20 18 41 41 H 1.09001 * 113.61205 * 220.01825 * 22 21 20 42 42 H 1.09005 * 113.61411 * 89.11656 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1431 2.0634 -1.1809 5 1 1.4105 1.9278 -1.9627 6 6 3.2112 2.9289 -1.3730 7 7 4.3026 2.7981 -0.6491 8 14 3.0993 4.2794 -2.6586 9 1 1.9627 5.1785 -2.3347 10 1 4.3618 5.0613 -2.6662 11 1 2.8844 3.6724 -3.9968 12 6 2.3732 2.0328 1.2633 13 6 1.1425 2.7384 1.8364 14 7 1.4972 3.3895 3.1000 15 6 0.5646 4.0760 3.7893 16 8 -0.5685 4.1545 3.3639 17 6 0.9279 4.7406 5.0922 18 6 -0.3043 5.4410 5.6685 19 8 -1.4303 4.5700 5.7927 20 6 -0.6301 6.7781 4.9824 21 6 -0.9652 7.3239 6.3804 22 6 -0.0119 6.2549 6.9400 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.0488 3.4033 -0.7831 29 1 3.1616 2.7642 1.0859 30 1 2.7255 1.2835 1.9721 31 1 0.3541 2.0070 2.0138 32 1 0.7902 3.4877 1.1276 33 1 2.4033 3.3264 3.4405 34 1 1.2814 3.9885 5.7974 35 1 1.7150 5.4744 4.9186 36 1 -1.6335 4.0727 4.9886 37 1 0.2355 7.2555 4.5231 38 1 -1.4908 6.7282 4.3153 39 1 -2.0057 7.1753 6.6693 40 1 -0.6216 8.3450 6.5459 41 1 -0.3734 5.7826 7.8535 42 1 1.0228 6.5893 7.0161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691017330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:33 Heat of formation + Delta-G solvation = -75.574933 kcal Electronic energy + Delta-G solvation = -21375.612713 eV Core-core repulsion = 18162.894468 eV Total energy + Delta-G solvation = -3212.718244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.41125 -39.64922 -38.06749 -35.78116 -35.27732 -33.84955 -32.06871 -30.82462 -29.02228 -26.64504 -26.18440 -24.53120 -23.21074 -22.16567 -21.44362 -20.55093 -18.75142 -17.91759 -17.61566 -17.04552 -16.82164 -16.61425 -16.00564 -15.84581 -15.70713 -15.36921 -14.88891 -14.53187 -14.12959 -14.02717 -13.80876 -13.51475 -13.24939 -13.18510 -13.01478 -12.63200 -12.50717 -12.41157 -12.31883 -12.13553 -12.03934 -11.76686 -11.69652 -11.53127 -11.40434 -10.72214 -10.60784 -10.55495 -10.03431 -8.60948 -7.87574 -5.50427 1.43629 1.46847 1.52924 1.59742 2.20265 2.49746 3.15769 3.20429 3.53247 3.65488 3.72712 3.80263 3.93523 4.18844 4.30898 4.42055 4.45091 4.46001 4.55430 4.72866 4.74704 4.80381 4.81206 4.83336 4.85507 5.05410 5.07246 5.13753 5.21690 5.27499 5.32222 5.39918 5.47093 5.54847 5.64864 5.73501 6.43376 6.58353 6.71605 7.13510 7.28032 7.81485 8.33534 9.08301 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.004418 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.671025 B = 6335.947213 C = 7053.805864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.598 5.598 4 C -0.275 4.275 5 H 0.051 0.949 6 C -0.025 4.025 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.287 1.287 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.145 3.855 13 C 0.119 3.881 14 N -0.711 5.711 15 C 0.506 3.494 16 O -0.588 6.588 17 C -0.153 4.153 18 C 0.112 3.888 19 O -0.567 6.567 20 C -0.170 4.170 21 C -0.131 4.131 22 C -0.115 4.115 23 H 0.041 0.959 24 H 0.033 0.967 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.052 0.948 28 H 0.255 0.745 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.027 0.973 33 H 0.413 0.587 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.384 0.616 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 4.826 14.798 15.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.320 5.320 4 C -0.405 4.405 5 H 0.068 0.932 6 C -0.223 4.223 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.213 1.213 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.018 3.982 13 C -0.008 4.008 14 N -0.362 5.362 15 C 0.295 3.705 16 O -0.470 6.470 17 C -0.193 4.193 18 C 0.070 3.930 19 O -0.379 6.379 20 C -0.208 4.208 21 C -0.169 4.169 22 C -0.152 4.152 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.250 0.750 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.238 0.762 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.082 5.139 15.038 16.407 hybrid contribution 0.215 0.327 -1.612 1.659 sum -3.867 5.466 13.425 15.002 Atomic orbital electron populations 1.22213 0.97997 1.00847 1.00347 1.21010 0.93160 0.85466 0.99252 1.43857 1.76431 1.09632 1.02046 1.19140 1.04495 1.22010 0.94854 0.93160 1.25727 0.93921 1.02720 0.99971 1.70076 1.03497 1.37923 1.43805 0.85625 0.76586 0.79976 0.79968 1.21318 1.21235 1.20058 1.20932 0.94442 0.96747 0.86128 1.21900 0.99839 0.95325 0.83704 1.46027 1.14275 1.52620 1.23293 1.21385 0.84711 0.77872 0.86574 1.90522 1.22310 1.62892 1.71325 1.22399 1.00929 1.02784 0.93201 1.22135 0.84743 0.88258 0.97844 1.86277 1.49117 1.59801 1.42661 1.23640 1.01935 0.97598 0.97611 1.22721 0.99730 0.99413 0.95017 1.23103 1.01669 0.94861 0.95559 0.94033 0.94756 0.91246 0.94546 0.92977 0.93609 0.90848 0.93713 0.93376 0.95407 0.75042 0.85824 0.85061 0.76152 0.88708 0.93443 0.91120 0.89441 0.90570 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 10.21 71.98 0.73 -4.79 16 2 C 0.14 5.55 6.44 86.38 0.56 6.11 16 3 N -0.60 -28.80 2.43 -701.98 -1.71 -30.51 16 4 C -0.27 -14.80 9.45 84.03 0.79 -14.01 16 5 H 0.05 2.76 7.92 -2.91 -0.02 2.74 16 6 C -0.03 -1.35 4.95 84.86 0.42 -0.93 16 7 N -0.91 -50.24 11.47 21.65 0.25 -50.00 16 8 Si 0.95 43.79 29.60 68.60 2.03 45.82 16 9 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.14 6.26 5.45 86.38 0.47 6.73 16 13 C 0.12 4.70 6.00 86.38 0.52 5.21 16 14 N -0.71 -21.68 5.56 -463.08 -2.57 -24.26 16 15 C 0.51 15.06 7.59 87.66 0.67 15.73 16 16 O -0.59 -22.04 13.59 15.90 0.22 -21.82 16 17 C -0.15 -3.06 5.34 29.85 0.16 -2.90 16 18 C 0.11 2.55 1.10 -10.27 -0.01 2.54 16 19 O -0.57 -16.49 13.39 -130.03 -1.74 -18.23 16 20 C -0.17 -3.92 7.17 31.12 0.22 -3.70 16 21 C -0.13 -2.41 8.02 31.12 0.25 -2.17 16 22 C -0.11 -1.89 7.47 31.12 0.23 -1.66 16 23 H 0.04 1.49 6.64 -2.39 -0.02 1.48 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 27 H 0.05 1.92 7.83 -2.39 -0.02 1.90 16 28 H 0.25 13.57 8.31 -92.70 -0.77 12.80 16 29 H 0.07 3.60 5.52 -2.39 -0.01 3.59 16 30 H 0.04 1.76 7.86 -2.39 -0.02 1.75 16 31 H 0.05 1.94 6.64 -2.39 -0.02 1.92 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.41 10.13 8.47 -92.70 -0.79 9.34 16 34 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.13 1.91 8.05 -2.39 -0.02 1.89 16 36 H 0.38 12.10 6.19 -74.06 -0.46 11.64 16 37 H 0.09 1.93 8.03 -2.39 -0.02 1.91 16 38 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.12 1.31 8.10 -2.38 -0.02 1.29 16 Total: -1.00 -65.14 339.35 1.25 -63.89 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: -0.23 Total: 28.91 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.01 Total: 6.18 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -4.03 Total: -104.76 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.53 Total: -40.05 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.14 1.25 -63.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691017330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.685 kcal (2) G-P(sol) polarization free energy of solvation -65.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds