Wall clock time and date at job start Mon Mar 30 2020 01:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00057 * 2 1 4 4 C 1.53004 * 109.46969 * 269.99418 * 3 2 1 5 5 N 1.46498 * 109.46969 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00064 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00360 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99969 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 119.99777 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47068 * 90.00345 * 10 8 6 12 12 H 1.48500 * 109.47493 * 210.00224 * 10 8 6 13 13 H 1.48502 * 109.47405 * 330.00622 * 10 8 6 14 14 C 1.34776 * 119.99834 * 179.97438 * 2 1 3 15 15 O 1.21283 * 120.00249 * 180.02562 * 14 2 1 16 16 C 1.50707 * 119.99983 * 359.97438 * 14 2 1 17 17 C 1.52998 * 109.46813 * 180.02562 * 16 14 2 18 18 C 1.52999 * 109.46946 * 180.02562 * 17 16 14 19 19 H 1.09001 * 109.87003 * 306.00661 * 18 17 16 20 20 C 1.54100 * 109.87953 * 185.00237 * 18 17 16 21 21 C 1.54817 * 104.18606 * 238.54620 * 20 18 17 22 22 C 1.54998 * 102.12466 * 339.09929 * 21 20 18 23 23 O 1.43746 * 109.87960 * 67.16649 * 18 17 16 24 24 H 1.08996 * 109.47047 * 270.00352 * 1 2 3 25 25 H 1.09007 * 109.47113 * 30.00355 * 1 2 3 26 26 H 1.09004 * 109.47104 * 149.99984 * 1 2 3 27 27 H 1.08996 * 109.47114 * 29.99907 * 3 2 1 28 28 H 1.09000 * 109.47260 * 149.99944 * 3 2 1 29 29 H 1.08996 * 109.47601 * 300.00190 * 4 3 2 30 30 H 1.09004 * 109.46739 * 60.00708 * 4 3 2 31 31 H 0.97005 * 120.00360 * 0.02562 * 5 4 3 32 32 H 0.96998 * 119.99879 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.46655 * 60.00616 * 16 14 2 34 34 H 1.08992 * 109.47045 * 300.00448 * 16 14 2 35 35 H 1.09000 * 109.47366 * 60.00208 * 17 16 14 36 36 H 1.09002 * 109.47460 * 300.00060 * 17 16 14 37 37 H 1.08991 * 110.48958 * 119.87334 * 20 18 17 38 38 H 1.08995 * 110.60333 * 357.27080 * 20 18 17 39 39 H 1.09002 * 110.90844 * 97.31763 * 21 20 18 40 40 H 1.08997 * 110.90682 * 220.88854 * 21 20 18 41 41 H 1.08997 * 110.61738 * 155.54187 * 22 21 20 42 42 H 1.08997 * 110.62197 * 278.54323 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1856 2.9787 -1.4425 6 6 3.5277 3.5718 -2.6284 7 1 3.2575 3.1043 -3.5638 8 6 4.2228 4.7734 -2.6285 9 7 4.5520 5.3431 -3.7684 10 14 4.6908 5.5816 -1.0109 11 1 6.0268 5.0949 -0.5826 12 1 4.7345 7.0554 -1.1881 13 1 3.6834 5.2372 0.0244 14 6 2.1388 -1.1672 0.0005 15 8 3.3517 -1.1673 0.0010 16 6 1.3852 -2.4724 0.0017 17 6 2.3795 -3.6352 0.0027 18 6 1.6145 -4.9602 0.0033 19 1 0.9071 -4.9793 0.8323 20 6 2.6027 -6.1358 0.1307 21 6 2.3451 -6.9871 -1.1365 22 6 0.9214 -6.5339 -1.5493 23 8 0.9162 -5.1220 -1.2427 24 1 -0.3633 0.0001 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1384 0.5138 29 1 3.0417 0.9506 -1.9563 30 1 1.5002 1.8407 -1.9564 31 1 3.4287 3.3984 -0.6025 32 1 5.0373 6.1829 -3.7684 33 1 0.7583 -2.5306 -0.8881 34 1 0.7589 -2.5294 0.8919 35 1 3.0062 -3.5767 0.8927 36 1 3.0062 -3.5783 -0.8873 37 1 2.3919 -6.7157 1.0291 38 1 3.6304 -5.7732 0.1441 39 1 3.0694 -6.7525 -1.9166 40 1 2.3613 -8.0510 -0.9003 41 1 0.7607 -6.6966 -2.6150 42 1 0.1667 -7.0569 -0.9620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691262353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:15 Heat of formation + Delta-G solvation = -74.412520 kcal Electronic energy + Delta-G solvation = -20656.585105 eV Core-core repulsion = 17443.917267 eV Total energy + Delta-G solvation = -3212.667838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07363 -39.42942 -36.03453 -34.45996 -33.70608 -32.36387 -31.50979 -29.42172 -28.15558 -26.45974 -24.68651 -23.12006 -22.07682 -21.32010 -21.06474 -19.01313 -17.57135 -17.06029 -16.69982 -16.25372 -15.84581 -15.72283 -15.26846 -14.39639 -14.01449 -13.93561 -13.79460 -13.37650 -13.28412 -13.06993 -12.69081 -12.61542 -12.44682 -12.11371 -11.90877 -11.66279 -11.51072 -11.24372 -11.15139 -11.04720 -11.00691 -10.89269 -10.69323 -10.13797 -9.95337 -9.63102 -9.55334 -8.85612 -8.51257 -7.20281 -5.72683 -3.08615 2.77454 3.09363 3.40801 3.44671 3.48722 3.57179 4.23678 4.34188 4.57891 4.60405 4.63229 4.74504 4.89577 4.98210 5.07372 5.14745 5.27608 5.31647 5.35623 5.38426 5.43914 5.48405 5.52677 5.60982 5.61760 5.64987 5.71087 5.75899 5.80738 5.92385 6.00390 6.12062 6.50906 6.64024 6.68965 6.87346 7.50513 8.02981 8.32212 8.45813 9.24469 9.96633 10.16246 11.45788 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032216 B = 0.003097 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.922579 B = 9037.409347 C = 9237.023717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.614 5.614 3 C 0.104 3.896 4 C 0.147 3.853 5 N -0.754 5.754 6 C -0.242 4.242 7 H 0.090 0.910 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.887 3.113 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.509 3.491 15 O -0.536 6.536 16 C -0.135 4.135 17 C -0.103 4.103 18 C 0.076 3.924 19 H 0.068 0.932 20 C -0.153 4.153 21 C -0.156 4.156 22 C 0.046 3.954 23 O -0.372 6.372 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.031 0.969 30 H 0.026 0.974 31 H 0.361 0.639 32 H 0.259 0.741 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.194 -24.799 11.139 29.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.348 5.348 3 C -0.019 4.019 4 C 0.018 3.982 5 N -0.400 5.400 6 C -0.372 4.372 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.583 5.583 10 Si 0.717 3.283 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.297 3.703 15 O -0.413 6.413 16 C -0.175 4.175 17 C -0.141 4.141 18 C 0.018 3.982 19 H 0.086 0.914 20 C -0.191 4.191 21 C -0.194 4.194 22 C -0.031 4.031 23 O -0.292 6.292 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.193 0.807 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.624 -24.579 10.773 28.862 hybrid contribution 0.322 0.578 1.144 1.322 sum -10.302 -24.001 11.918 28.709 Atomic orbital electron populations 1.21822 0.79577 1.03631 1.01559 1.47813 1.06980 1.06276 1.73742 1.21706 0.97475 0.83709 0.99019 1.20892 0.95351 0.88557 0.93367 1.42568 1.68753 1.23239 1.05442 1.19045 1.29590 1.02879 0.85687 0.89249 1.24673 1.00488 0.97634 0.96439 1.69704 1.44954 1.19723 1.23919 0.86510 0.78603 0.78879 0.84322 1.20983 1.21707 1.20350 1.20746 0.88145 0.85408 0.75979 1.90721 1.13997 1.87342 1.49223 1.21651 0.99420 0.91991 1.04392 1.21561 0.97175 0.90965 1.04353 1.22811 0.93002 0.95203 0.87158 0.91406 1.23004 1.01061 0.96533 0.98499 1.23137 0.97937 1.00243 0.98103 1.23551 0.95964 0.82241 1.01339 1.88926 1.76806 1.23902 1.39536 0.92743 0.90588 0.90952 0.90675 0.89865 0.95095 0.95617 0.80686 0.93057 0.88254 0.89314 0.90007 0.90190 0.90710 0.89971 0.90338 0.90368 0.89013 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.24 59.85 0.61 1.36 16 2 N -0.61 -8.67 2.87 -181.57 -0.52 -9.19 16 3 C 0.10 1.76 5.52 -4.04 -0.02 1.73 16 4 C 0.15 3.10 6.58 -4.04 -0.03 3.08 16 5 N -0.75 -19.10 5.41 -59.91 -0.32 -19.42 16 6 C -0.24 -7.22 10.47 -15.06 -0.16 -7.38 16 7 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 9 N -0.93 -30.26 13.97 55.49 0.78 -29.48 16 10 Si 0.89 22.79 27.73 -169.99 -4.71 18.08 16 11 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 13 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 14 C 0.51 7.60 7.67 -10.98 -0.08 7.51 16 15 O -0.54 -10.29 15.56 5.55 0.09 -10.20 16 16 C -0.13 -1.43 4.17 -27.88 -0.12 -1.54 16 17 C -0.10 -1.08 3.99 -26.73 -0.11 -1.19 16 18 C 0.08 0.65 3.41 -26.16 -0.09 0.57 16 19 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 20 C -0.15 -1.09 6.64 -25.20 -0.17 -1.25 16 21 C -0.16 -1.02 7.15 -24.72 -0.18 -1.20 16 22 C 0.05 0.33 7.73 38.21 0.30 0.63 16 23 O -0.37 -3.80 10.84 -35.23 -0.38 -4.18 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 26 H 0.07 0.57 6.44 -51.93 -0.33 0.24 16 27 H 0.07 1.13 8.07 -51.93 -0.42 0.72 16 28 H 0.08 1.54 7.42 -51.93 -0.39 1.15 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.36 8.78 5.53 -40.82 -0.23 8.55 16 32 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 33 H 0.10 1.02 7.17 -51.93 -0.37 0.65 16 34 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.61 7.70 -51.93 -0.40 0.21 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -36.00 340.56 -7.30 -43.29 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.21 Total: 3.65 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.13 Total: 2.32 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.07 Total: -58.09 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.30 Total: -14.39 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.08 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.00 -7.30 -43.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691262353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.119 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds