Wall clock time and date at job start Mon Mar 30 2020 01:27:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.46498 * 120.00057 * 2 1
4 4 C 1.53004 * 109.46969 * 269.99418 * 3 2 1
5 5 N 1.46498 * 109.46969 * 180.02562 * 4 3 2
6 6 C 1.36937 * 120.00064 * 180.02562 * 5 4 3
7 7 H 1.08000 * 119.99963 * 359.97438 * 6 5 4
8 8 C 1.38815 * 120.00360 * 180.02562 * 6 5 4
9 9 N 1.31616 * 119.99969 * 179.97438 * 8 6 5
10 10 Si 1.86793 * 119.99777 * 359.97438 * 8 6 5
11 11 H 1.48500 * 109.47068 * 90.00345 * 10 8 6
12 12 H 1.48500 * 109.47493 * 210.00224 * 10 8 6
13 13 H 1.48502 * 109.47405 * 330.00622 * 10 8 6
14 14 C 1.34776 * 119.99834 * 179.97438 * 2 1 3
15 15 O 1.21283 * 120.00249 * 180.02562 * 14 2 1
16 16 C 1.50707 * 119.99983 * 359.97438 * 14 2 1
17 17 C 1.52998 * 109.46813 * 180.02562 * 16 14 2
18 18 C 1.52999 * 109.46946 * 180.02562 * 17 16 14
19 19 H 1.09001 * 109.87003 * 306.00661 * 18 17 16
20 20 C 1.54100 * 109.87953 * 185.00237 * 18 17 16
21 21 C 1.54817 * 104.18606 * 238.54620 * 20 18 17
22 22 C 1.54998 * 102.12466 * 339.09929 * 21 20 18
23 23 O 1.43746 * 109.87960 * 67.16649 * 18 17 16
24 24 H 1.08996 * 109.47047 * 270.00352 * 1 2 3
25 25 H 1.09007 * 109.47113 * 30.00355 * 1 2 3
26 26 H 1.09004 * 109.47104 * 149.99984 * 1 2 3
27 27 H 1.08996 * 109.47114 * 29.99907 * 3 2 1
28 28 H 1.09000 * 109.47260 * 149.99944 * 3 2 1
29 29 H 1.08996 * 109.47601 * 300.00190 * 4 3 2
30 30 H 1.09004 * 109.46739 * 60.00708 * 4 3 2
31 31 H 0.97005 * 120.00360 * 0.02562 * 5 4 3
32 32 H 0.96998 * 119.99879 * 179.97438 * 9 8 6
33 33 H 1.09002 * 109.46655 * 60.00616 * 16 14 2
34 34 H 1.08992 * 109.47045 * 300.00448 * 16 14 2
35 35 H 1.09000 * 109.47366 * 60.00208 * 17 16 14
36 36 H 1.09002 * 109.47460 * 300.00060 * 17 16 14
37 37 H 1.08991 * 110.48958 * 119.87334 * 20 18 17
38 38 H 1.08995 * 110.60333 * 357.27080 * 20 18 17
39 39 H 1.09002 * 110.90844 * 97.31763 * 21 20 18
40 40 H 1.08997 * 110.90682 * 220.88854 * 21 20 18
41 41 H 1.08997 * 110.61738 * 155.54187 * 22 21 20
42 42 H 1.08997 * 110.62197 * 278.54323 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4526 1.7103 -1.4425
5 7 3.1856 2.9787 -1.4425
6 6 3.5277 3.5718 -2.6284
7 1 3.2575 3.1043 -3.5638
8 6 4.2228 4.7734 -2.6285
9 7 4.5520 5.3431 -3.7684
10 14 4.6908 5.5816 -1.0109
11 1 6.0268 5.0949 -0.5826
12 1 4.7345 7.0554 -1.1881
13 1 3.6834 5.2372 0.0244
14 6 2.1388 -1.1672 0.0005
15 8 3.3517 -1.1673 0.0010
16 6 1.3852 -2.4724 0.0017
17 6 2.3795 -3.6352 0.0027
18 6 1.6145 -4.9602 0.0033
19 1 0.9071 -4.9793 0.8323
20 6 2.6027 -6.1358 0.1307
21 6 2.3451 -6.9871 -1.1365
22 6 0.9214 -6.5339 -1.5493
23 8 0.9162 -5.1220 -1.2427
24 1 -0.3633 0.0001 1.0276
25 1 -0.3634 0.8900 -0.5139
26 1 -0.3633 -0.8900 -0.5139
27 1 1.6084 2.0283 0.5138
28 1 3.1499 1.1384 0.5138
29 1 3.0417 0.9506 -1.9563
30 1 1.5002 1.8407 -1.9564
31 1 3.4287 3.3984 -0.6025
32 1 5.0373 6.1829 -3.7684
33 1 0.7583 -2.5306 -0.8881
34 1 0.7589 -2.5294 0.8919
35 1 3.0062 -3.5767 0.8927
36 1 3.0062 -3.5783 -0.8873
37 1 2.3919 -6.7157 1.0291
38 1 3.6304 -5.7732 0.1441
39 1 3.0694 -6.7525 -1.9166
40 1 2.3613 -8.0510 -0.9003
41 1 0.7607 -6.6966 -2.6150
42 1 0.1667 -7.0569 -0.9620
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001691262353.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:27:15
Heat of formation + Delta-G solvation = -74.412520 kcal
Electronic energy + Delta-G solvation = -20656.585105 eV
Core-core repulsion = 17443.917267 eV
Total energy + Delta-G solvation = -3212.667838 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 270.173 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.07363 -39.42942 -36.03453 -34.45996 -33.70608 -32.36387 -31.50979 -29.42172
-28.15558 -26.45974 -24.68651 -23.12006 -22.07682 -21.32010 -21.06474 -19.01313
-17.57135 -17.06029 -16.69982 -16.25372 -15.84581 -15.72283 -15.26846 -14.39639
-14.01449 -13.93561 -13.79460 -13.37650 -13.28412 -13.06993 -12.69081 -12.61542
-12.44682 -12.11371 -11.90877 -11.66279 -11.51072 -11.24372 -11.15139 -11.04720
-11.00691 -10.89269 -10.69323 -10.13797 -9.95337 -9.63102 -9.55334 -8.85612
-8.51257 -7.20281 -5.72683 -3.08615 2.77454 3.09363 3.40801 3.44671
3.48722 3.57179 4.23678 4.34188 4.57891 4.60405 4.63229 4.74504
4.89577 4.98210 5.07372 5.14745 5.27608 5.31647 5.35623 5.38426
5.43914 5.48405 5.52677 5.60982 5.61760 5.64987 5.71087 5.75899
5.80738 5.92385 6.00390 6.12062 6.50906 6.64024 6.68965 6.87346
7.50513 8.02981 8.32212 8.45813 9.24469 9.96633 10.16246 11.45788
Molecular weight = 270.17amu
Principal moments of inertia in cm(-1)
A = 0.032216 B = 0.003097 C = 0.003031
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 868.922579 B = 9037.409347 C = 9237.023717
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.077 3.923
2 N -0.614 5.614
3 C 0.104 3.896
4 C 0.147 3.853
5 N -0.754 5.754
6 C -0.242 4.242
7 H 0.090 0.910
8 C 0.003 3.997
9 N -0.935 5.935
10 Si 0.887 3.113
11 H -0.283 1.283
12 H -0.291 1.291
13 H -0.277 1.277
14 C 0.509 3.491
15 O -0.536 6.536
16 C -0.135 4.135
17 C -0.103 4.103
18 C 0.076 3.924
19 H 0.068 0.932
20 C -0.153 4.153
21 C -0.156 4.156
22 C 0.046 3.954
23 O -0.372 6.372
24 H 0.054 0.946
25 H 0.075 0.925
26 H 0.072 0.928
27 H 0.075 0.925
28 H 0.083 0.917
29 H 0.031 0.969
30 H 0.026 0.974
31 H 0.361 0.639
32 H 0.259 0.741
33 H 0.099 0.901
34 H 0.089 0.911
35 H 0.081 0.919
36 H 0.079 0.921
37 H 0.074 0.926
38 H 0.082 0.918
39 H 0.078 0.922
40 H 0.078 0.922
41 H 0.092 0.908
42 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.194 -24.799 11.139 29.400
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 N -0.348 5.348
3 C -0.019 4.019
4 C 0.018 3.982
5 N -0.400 5.400
6 C -0.372 4.372
7 H 0.108 0.892
8 C -0.192 4.192
9 N -0.583 5.583
10 Si 0.717 3.283
11 H -0.210 1.210
12 H -0.217 1.217
13 H -0.203 1.203
14 C 0.297 3.703
15 O -0.413 6.413
16 C -0.175 4.175
17 C -0.141 4.141
18 C 0.018 3.982
19 H 0.086 0.914
20 C -0.191 4.191
21 C -0.194 4.194
22 C -0.031 4.031
23 O -0.292 6.292
24 H 0.073 0.927
25 H 0.094 0.906
26 H 0.090 0.910
27 H 0.093 0.907
28 H 0.101 0.899
29 H 0.049 0.951
30 H 0.044 0.956
31 H 0.193 0.807
32 H 0.069 0.931
33 H 0.117 0.883
34 H 0.107 0.893
35 H 0.100 0.900
36 H 0.098 0.902
37 H 0.093 0.907
38 H 0.100 0.900
39 H 0.097 0.903
40 H 0.096 0.904
41 H 0.110 0.890
42 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -10.624 -24.579 10.773 28.862
hybrid contribution 0.322 0.578 1.144 1.322
sum -10.302 -24.001 11.918 28.709
Atomic orbital electron populations
1.21822 0.79577 1.03631 1.01559 1.47813 1.06980 1.06276 1.73742
1.21706 0.97475 0.83709 0.99019 1.20892 0.95351 0.88557 0.93367
1.42568 1.68753 1.23239 1.05442 1.19045 1.29590 1.02879 0.85687
0.89249 1.24673 1.00488 0.97634 0.96439 1.69704 1.44954 1.19723
1.23919 0.86510 0.78603 0.78879 0.84322 1.20983 1.21707 1.20350
1.20746 0.88145 0.85408 0.75979 1.90721 1.13997 1.87342 1.49223
1.21651 0.99420 0.91991 1.04392 1.21561 0.97175 0.90965 1.04353
1.22811 0.93002 0.95203 0.87158 0.91406 1.23004 1.01061 0.96533
0.98499 1.23137 0.97937 1.00243 0.98103 1.23551 0.95964 0.82241
1.01339 1.88926 1.76806 1.23902 1.39536 0.92743 0.90588 0.90952
0.90675 0.89865 0.95095 0.95617 0.80686 0.93057 0.88254 0.89314
0.90007 0.90190 0.90710 0.89971 0.90338 0.90368 0.89013 0.92317
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.75 10.24 59.85 0.61 1.36 16
2 N -0.61 -8.67 2.87 -181.57 -0.52 -9.19 16
3 C 0.10 1.76 5.52 -4.04 -0.02 1.73 16
4 C 0.15 3.10 6.58 -4.04 -0.03 3.08 16
5 N -0.75 -19.10 5.41 -59.91 -0.32 -19.42 16
6 C -0.24 -7.22 10.47 -15.06 -0.16 -7.38 16
7 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16
8 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16
9 N -0.93 -30.26 13.97 55.49 0.78 -29.48 16
10 Si 0.89 22.79 27.73 -169.99 -4.71 18.08 16
11 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16
12 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16
13 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16
14 C 0.51 7.60 7.67 -10.98 -0.08 7.51 16
15 O -0.54 -10.29 15.56 5.55 0.09 -10.20 16
16 C -0.13 -1.43 4.17 -27.88 -0.12 -1.54 16
17 C -0.10 -1.08 3.99 -26.73 -0.11 -1.19 16
18 C 0.08 0.65 3.41 -26.16 -0.09 0.57 16
19 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
20 C -0.15 -1.09 6.64 -25.20 -0.17 -1.25 16
21 C -0.16 -1.02 7.15 -24.72 -0.18 -1.20 16
22 C 0.05 0.33 7.73 38.21 0.30 0.63 16
23 O -0.37 -3.80 10.84 -35.23 -0.38 -4.18 16
24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
25 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16
26 H 0.07 0.57 6.44 -51.93 -0.33 0.24 16
27 H 0.07 1.13 8.07 -51.93 -0.42 0.72 16
28 H 0.08 1.54 7.42 -51.93 -0.39 1.15 16
29 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16
30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
31 H 0.36 8.78 5.53 -40.82 -0.23 8.55 16
32 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16
33 H 0.10 1.02 7.17 -51.93 -0.37 0.65 16
34 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16
35 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16
36 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16
37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
38 H 0.08 0.61 7.70 -51.93 -0.40 0.21 16
39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16
41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16
42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
LS Contribution 340.56 15.07 5.13 5.13
Total: -1.00 -36.00 340.56 -7.30 -43.29
By element:
Atomic # 1 Polarization: 10.87 SS G_CDS: -7.21 Total: 3.65 kcal
Atomic # 6 Polarization: 2.46 SS G_CDS: -0.13 Total: 2.32 kcal
Atomic # 7 Polarization: -58.02 SS G_CDS: -0.07 Total: -58.09 kcal
Atomic # 8 Polarization: -14.09 SS G_CDS: -0.30 Total: -14.39 kcal
Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.08 kcal
Total LS contribution 5.13 Total: 5.13 kcal
Total: -36.00 -7.30 -43.29 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691262353.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.119 kcal
(2) G-P(sol) polarization free energy of solvation -35.996 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.115 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.413 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds