Wall clock time and date at job start Mon Mar 30 2020 01:27:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.46492 * 119.99980 * 2 1
4 4 C 1.53004 * 109.47237 * 270.00273 * 3 2 1
5 5 N 1.46500 * 109.47490 * 180.02562 * 4 3 2
6 6 C 1.36935 * 120.00227 * 180.02562 * 5 4 3
7 7 H 1.08000 * 119.99815 * 359.97438 * 6 5 4
8 8 C 1.38818 * 119.99924 * 180.02562 * 6 5 4
9 9 N 1.31613 * 119.99921 * 359.97438 * 8 6 5
10 10 Si 1.86792 * 119.99721 * 179.97438 * 8 6 5
11 11 H 1.48504 * 109.47016 * 89.99805 * 10 8 6
12 12 H 1.48498 * 109.47201 * 209.99702 * 10 8 6
13 13 H 1.48502 * 109.47625 * 330.00057 * 10 8 6
14 14 C 1.34779 * 119.99993 * 180.02562 * 2 1 3
15 15 O 1.21276 * 120.00130 * 186.06837 * 14 2 1
16 16 C 1.50701 * 119.99844 * 6.07420 * 14 2 1
17 17 H 1.09002 * 109.53574 * 333.90894 * 16 14 2
18 18 C 1.54206 * 109.53588 * 213.74670 * 16 14 2
19 19 C 1.46288 * 111.98679 * 162.52116 * 18 16 14
20 20 C 1.54121 * 112.19993 * 61.41451 * 19 18 16
21 21 O 1.40321 * 108.70177 * 280.43624 * 20 19 18
22 22 C 1.43997 * 116.57902 * 95.04852 * 21 20 19
23 23 C 1.50627 * 109.60739 * 94.11729 * 16 14 2
24 24 H 1.09004 * 109.46982 * 245.40824 * 1 2 3
25 25 H 1.09002 * 109.47221 * 5.40119 * 1 2 3
26 26 H 1.08994 * 109.47463 * 125.40949 * 1 2 3
27 27 H 1.09000 * 109.47216 * 30.00200 * 3 2 1
28 28 H 1.09002 * 109.47241 * 150.00259 * 3 2 1
29 29 H 1.09000 * 109.46958 * 300.00085 * 4 3 2
30 30 H 1.09002 * 109.47017 * 59.99849 * 4 3 2
31 31 H 0.97008 * 119.99499 * 359.97438 * 5 4 3
32 32 H 0.97007 * 120.00060 * 180.02562 * 9 8 6
33 33 H 1.08994 * 108.97932 * 283.16856 * 18 16 14
34 34 H 1.08997 * 108.97464 * 41.96239 * 18 16 14
35 35 H 1.08995 * 108.93640 * 182.11400 * 19 18 16
36 36 H 1.08999 * 108.93422 * 300.71696 * 19 18 16
37 37 H 1.08992 * 109.59662 * 40.20416 * 20 19 18
38 38 H 1.09001 * 109.59206 * 160.67632 * 20 19 18
39 39 H 1.08998 * 108.69560 * 78.90432 * 22 21 20
40 40 H 1.08994 * 108.69276 * 196.87788 * 22 21 20
41 41 H 1.08998 * 108.87883 * 331.01146 * 23 16 14
42 42 H 1.08996 * 108.87605 * 89.47235 * 23 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4524 1.7104 -1.4425
5 7 3.1855 2.9788 -1.4426
6 6 3.5274 3.5720 -2.6285
7 1 3.2570 3.1045 -3.5638
8 6 4.2225 4.7736 -2.6285
9 7 4.5523 5.3430 -1.4887
10 14 4.6895 5.5824 -4.2462
11 1 3.6012 6.4977 -4.6743
12 1 5.9451 6.3551 -4.0690
13 1 4.8932 4.5374 -5.2815
14 6 2.1389 -1.1672 -0.0005
15 8 3.3466 -1.1702 0.1105
16 6 1.3917 -2.4686 -0.1392
17 1 0.3729 -2.3448 0.2279
18 6 2.1056 -3.5629 0.6798
19 6 1.2394 -4.7159 0.9254
20 6 0.7952 -5.3996 -0.3824
21 8 -0.2583 -4.6602 -0.9413
22 6 0.0972 -3.6866 -1.9410
23 6 1.3588 -2.8807 -1.5876
24 1 -0.3633 -0.4277 0.9345
25 1 -0.3634 1.0231 -0.0967
26 1 -0.3634 -0.5954 -0.8375
27 1 1.6084 2.0283 0.5139
28 1 3.1499 1.1383 0.5138
29 1 3.0415 0.9508 -1.9564
30 1 1.5000 1.8407 -1.9563
31 1 3.4280 3.3989 -0.6025
32 1 5.0377 6.1829 -1.4886
33 1 2.9898 -3.8935 0.1348
34 1 2.4157 -3.1437 1.6369
35 1 1.7784 -5.4392 1.5373
36 1 0.3550 -4.3843 1.4693
37 1 1.6312 -5.4305 -1.0810
38 1 0.4569 -6.4134 -0.1682
39 1 0.2655 -4.2022 -2.8865
40 1 -0.7356 -2.9948 -2.0666
41 1 1.3916 -1.9862 -2.2096
42 1 2.2375 -3.4891 -1.8012
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001691304027.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:27:36
Heat of formation + Delta-G solvation = -74.701016 kcal
Electronic energy + Delta-G solvation = -21443.059038 eV
Core-core repulsion = 18230.378689 eV
Total energy + Delta-G solvation = -3212.680348 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 270.173 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.54298 -38.87250 -36.00368 -34.89791 -34.31115 -32.86898 -31.34239 -28.54423
-27.39208 -26.52079 -25.85134 -23.74721 -21.88880 -21.18318 -20.82449 -18.92039
-17.37107 -17.11758 -17.09835 -16.13512 -15.81837 -15.29375 -15.09262 -14.48049
-14.31080 -13.76107 -13.71882 -13.37700 -13.25404 -13.18615 -12.95203 -12.84081
-12.40730 -12.26242 -11.82764 -11.48075 -11.26639 -11.03136 -10.91139 -10.88703
-10.86852 -10.72573 -10.64497 -10.10752 -9.80248 -9.74563 -9.45199 -8.87089
-8.47951 -6.93082 -5.75669 -3.05031 2.71906 3.08470 3.44512 3.49446
3.51678 3.56152 4.32574 4.38862 4.56439 4.61972 4.70222 4.75274
4.96078 5.06761 5.12781 5.20669 5.24785 5.33931 5.37260 5.49492
5.52408 5.62664 5.66726 5.71003 5.74650 5.77904 5.85193 5.88484
5.99444 6.04139 6.11368 6.14453 6.56890 6.74597 6.90936 7.08892
7.52130 7.70332 8.31623 8.42876 9.53623 10.09865 10.45013 11.47266
Molecular weight = 270.17amu
Principal moments of inertia in cm(-1)
A = 0.033677 B = 0.003550 C = 0.003455
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 831.228124 B = 7884.467826 C = 8103.003856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.080 3.920
2 N -0.613 5.613
3 C 0.105 3.895
4 C 0.144 3.856
5 N -0.730 5.730
6 C -0.239 4.239
7 H 0.070 0.930
8 C -0.014 4.014
9 N -0.933 5.933
10 Si 0.909 3.091
11 H -0.289 1.289
12 H -0.291 1.291
13 H -0.282 1.282
14 C 0.516 3.484
15 O -0.533 6.533
16 C -0.101 4.101
17 H 0.097 0.903
18 C -0.102 4.102
19 C -0.149 4.149
20 C 0.065 3.935
21 O -0.385 6.385
22 C 0.066 3.934
23 C -0.144 4.144
24 H 0.057 0.943
25 H 0.080 0.920
26 H 0.060 0.940
27 H 0.077 0.923
28 H 0.085 0.915
29 H 0.020 0.980
30 H 0.018 0.982
31 H 0.384 0.616
32 H 0.256 0.744
33 H 0.069 0.931
34 H 0.067 0.933
35 H 0.072 0.928
36 H 0.071 0.929
37 H 0.053 0.947
38 H 0.083 0.917
39 H 0.055 0.945
40 H 0.090 0.910
41 H 0.081 0.919
42 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.040 -20.800 4.182 24.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 N -0.346 5.346
3 C -0.017 4.017
4 C 0.015 3.985
5 N -0.375 5.375
6 C -0.370 4.370
7 H 0.088 0.912
8 C -0.210 4.210
9 N -0.582 5.582
10 Si 0.740 3.260
11 H -0.217 1.217
12 H -0.217 1.217
13 H -0.207 1.207
14 C 0.303 3.697
15 O -0.409 6.409
16 C -0.122 4.122
17 H 0.115 0.885
18 C -0.140 4.140
19 C -0.187 4.187
20 C -0.012 4.012
21 O -0.304 6.304
22 C -0.010 4.010
23 C -0.182 4.182
24 H 0.076 0.924
25 H 0.099 0.901
26 H 0.079 0.921
27 H 0.095 0.905
28 H 0.103 0.897
29 H 0.038 0.962
30 H 0.036 0.964
31 H 0.218 0.782
32 H 0.065 0.935
33 H 0.088 0.912
34 H 0.086 0.914
35 H 0.091 0.909
36 H 0.089 0.911
37 H 0.072 0.928
38 H 0.101 0.899
39 H 0.073 0.927
40 H 0.108 0.892
41 H 0.100 0.900
42 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -11.545 -20.781 4.121 24.127
hybrid contribution 0.607 0.854 -0.721 1.271
sum -10.937 -19.927 3.400 22.984
Atomic orbital electron populations
1.21795 0.79713 1.03638 1.01178 1.47837 1.06897 1.06330 1.73574
1.21750 0.97685 0.83226 0.99071 1.20907 0.95015 0.89367 0.93199
1.42217 1.67071 1.21627 1.06612 1.19205 1.29450 1.02412 0.85946
0.91221 1.24753 1.01211 0.98060 0.96954 1.69662 1.44974 1.19572
1.23965 0.86157 0.77685 0.79239 0.82923 1.21683 1.21697 1.20748
1.20577 0.87904 0.85095 0.76107 1.90716 1.14318 1.87209 1.48609
1.21063 1.00961 0.92958 0.97241 0.88503 1.20444 0.98489 0.94387
1.00657 1.21146 1.00599 0.98117 0.98799 1.22376 0.90556 0.94528
0.93761 1.87451 1.33702 1.52056 1.57169 1.22943 0.97155 0.90563
0.90321 1.21848 0.99444 1.01527 0.95419 0.92434 0.90070 0.92093
0.90487 0.89670 0.96214 0.96434 0.78241 0.93462 0.91229 0.91392
0.90945 0.91056 0.92831 0.89850 0.92714 0.89193 0.90005 0.90739
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.80 9.36 59.85 0.56 1.36 16
2 N -0.61 -8.83 2.87 -181.57 -0.52 -9.35 16
3 C 0.11 1.85 5.52 -4.04 -0.02 1.83 16
4 C 0.14 3.08 6.58 -4.04 -0.03 3.06 16
5 N -0.73 -19.36 5.60 -59.90 -0.34 -19.69 16
6 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16
7 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16
8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16
9 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16
10 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16
11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
14 C 0.52 7.84 6.35 -10.98 -0.07 7.77 16
15 O -0.53 -10.44 15.99 5.56 0.09 -10.35 16
16 C -0.10 -1.11 1.61 -92.33 -0.15 -1.26 16
17 H 0.10 0.93 6.16 -51.93 -0.32 0.61 16
18 C -0.10 -1.06 4.24 -29.29 -0.12 -1.18 16
19 C -0.15 -1.20 5.47 -29.34 -0.16 -1.36 16
20 C 0.06 0.51 6.38 37.74 0.24 0.75 16
21 O -0.38 -3.61 10.17 -33.68 -0.34 -3.96 16
22 C 0.07 0.55 6.67 37.58 0.25 0.80 16
23 C -0.14 -1.44 4.85 -27.49 -0.13 -1.57 16
24 H 0.06 0.47 7.89 -51.93 -0.41 0.06 16
25 H 0.08 0.79 7.84 -51.93 -0.41 0.38 16
26 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16
27 H 0.08 1.24 7.97 -51.93 -0.41 0.83 16
28 H 0.08 1.69 7.35 -51.93 -0.38 1.30 16
29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16
32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16
33 H 0.07 0.77 7.60 -51.93 -0.39 0.38 16
34 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16
35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
36 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16
37 H 0.05 0.41 6.98 -51.93 -0.36 0.04 16
38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16
41 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16
42 H 0.07 0.76 6.84 -51.93 -0.35 0.41 16
LS Contribution 333.92 15.07 5.03 5.03
Total: -1.00 -34.26 333.92 -7.34 -41.60
By element:
Atomic # 1 Polarization: 11.44 SS G_CDS: -7.08 Total: 4.37 kcal
Atomic # 6 Polarization: 2.49 SS G_CDS: 0.12 Total: 2.61 kcal
Atomic # 7 Polarization: -56.98 SS G_CDS: -0.13 Total: -57.11 kcal
Atomic # 8 Polarization: -14.05 SS G_CDS: -0.25 Total: -14.30 kcal
Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -34.26 -7.34 -41.60 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691304027.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.104 kcal
(2) G-P(sol) polarization free energy of solvation -34.261 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.365 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.701 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds