Wall clock time and date at job start Mon Mar 30 2020 01:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46492 * 119.99980 * 2 1 4 4 C 1.53004 * 109.47237 * 270.00273 * 3 2 1 5 5 N 1.46500 * 109.47490 * 180.02562 * 4 3 2 6 6 C 1.36935 * 120.00227 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99815 * 359.97438 * 6 5 4 8 8 C 1.38818 * 119.99924 * 180.02562 * 6 5 4 9 9 N 1.31613 * 119.99921 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 119.99721 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47016 * 89.99805 * 10 8 6 12 12 H 1.48498 * 109.47201 * 209.99702 * 10 8 6 13 13 H 1.48502 * 109.47625 * 330.00057 * 10 8 6 14 14 C 1.34779 * 119.99993 * 180.02562 * 2 1 3 15 15 O 1.21276 * 120.00130 * 186.06837 * 14 2 1 16 16 C 1.50701 * 119.99844 * 6.07420 * 14 2 1 17 17 H 1.09002 * 109.53574 * 333.90894 * 16 14 2 18 18 C 1.54206 * 109.53588 * 213.74670 * 16 14 2 19 19 C 1.46288 * 111.98679 * 162.52116 * 18 16 14 20 20 C 1.54121 * 112.19993 * 61.41451 * 19 18 16 21 21 O 1.40321 * 108.70177 * 280.43624 * 20 19 18 22 22 C 1.43997 * 116.57902 * 95.04852 * 21 20 19 23 23 C 1.50627 * 109.60739 * 94.11729 * 16 14 2 24 24 H 1.09004 * 109.46982 * 245.40824 * 1 2 3 25 25 H 1.09002 * 109.47221 * 5.40119 * 1 2 3 26 26 H 1.08994 * 109.47463 * 125.40949 * 1 2 3 27 27 H 1.09000 * 109.47216 * 30.00200 * 3 2 1 28 28 H 1.09002 * 109.47241 * 150.00259 * 3 2 1 29 29 H 1.09000 * 109.46958 * 300.00085 * 4 3 2 30 30 H 1.09002 * 109.47017 * 59.99849 * 4 3 2 31 31 H 0.97008 * 119.99499 * 359.97438 * 5 4 3 32 32 H 0.97007 * 120.00060 * 180.02562 * 9 8 6 33 33 H 1.08994 * 108.97932 * 283.16856 * 18 16 14 34 34 H 1.08997 * 108.97464 * 41.96239 * 18 16 14 35 35 H 1.08995 * 108.93640 * 182.11400 * 19 18 16 36 36 H 1.08999 * 108.93422 * 300.71696 * 19 18 16 37 37 H 1.08992 * 109.59662 * 40.20416 * 20 19 18 38 38 H 1.09001 * 109.59206 * 160.67632 * 20 19 18 39 39 H 1.08998 * 108.69560 * 78.90432 * 22 21 20 40 40 H 1.08994 * 108.69276 * 196.87788 * 22 21 20 41 41 H 1.08998 * 108.87883 * 331.01146 * 23 16 14 42 42 H 1.08996 * 108.87605 * 89.47235 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 7 3.1855 2.9788 -1.4426 6 6 3.5274 3.5720 -2.6285 7 1 3.2570 3.1045 -3.5638 8 6 4.2225 4.7736 -2.6285 9 7 4.5523 5.3430 -1.4887 10 14 4.6895 5.5824 -4.2462 11 1 3.6012 6.4977 -4.6743 12 1 5.9451 6.3551 -4.0690 13 1 4.8932 4.5374 -5.2815 14 6 2.1389 -1.1672 -0.0005 15 8 3.3466 -1.1702 0.1105 16 6 1.3917 -2.4686 -0.1392 17 1 0.3729 -2.3448 0.2279 18 6 2.1056 -3.5629 0.6798 19 6 1.2394 -4.7159 0.9254 20 6 0.7952 -5.3996 -0.3824 21 8 -0.2583 -4.6602 -0.9413 22 6 0.0972 -3.6866 -1.9410 23 6 1.3588 -2.8807 -1.5876 24 1 -0.3633 -0.4277 0.9345 25 1 -0.3634 1.0231 -0.0967 26 1 -0.3634 -0.5954 -0.8375 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5138 29 1 3.0415 0.9508 -1.9564 30 1 1.5000 1.8407 -1.9563 31 1 3.4280 3.3989 -0.6025 32 1 5.0377 6.1829 -1.4886 33 1 2.9898 -3.8935 0.1348 34 1 2.4157 -3.1437 1.6369 35 1 1.7784 -5.4392 1.5373 36 1 0.3550 -4.3843 1.4693 37 1 1.6312 -5.4305 -1.0810 38 1 0.4569 -6.4134 -0.1682 39 1 0.2655 -4.2022 -2.8865 40 1 -0.7356 -2.9948 -2.0666 41 1 1.3916 -1.9862 -2.2096 42 1 2.2375 -3.4891 -1.8012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691304027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:36 Heat of formation + Delta-G solvation = -74.701016 kcal Electronic energy + Delta-G solvation = -21443.059038 eV Core-core repulsion = 18230.378689 eV Total energy + Delta-G solvation = -3212.680348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.54298 -38.87250 -36.00368 -34.89791 -34.31115 -32.86898 -31.34239 -28.54423 -27.39208 -26.52079 -25.85134 -23.74721 -21.88880 -21.18318 -20.82449 -18.92039 -17.37107 -17.11758 -17.09835 -16.13512 -15.81837 -15.29375 -15.09262 -14.48049 -14.31080 -13.76107 -13.71882 -13.37700 -13.25404 -13.18615 -12.95203 -12.84081 -12.40730 -12.26242 -11.82764 -11.48075 -11.26639 -11.03136 -10.91139 -10.88703 -10.86852 -10.72573 -10.64497 -10.10752 -9.80248 -9.74563 -9.45199 -8.87089 -8.47951 -6.93082 -5.75669 -3.05031 2.71906 3.08470 3.44512 3.49446 3.51678 3.56152 4.32574 4.38862 4.56439 4.61972 4.70222 4.75274 4.96078 5.06761 5.12781 5.20669 5.24785 5.33931 5.37260 5.49492 5.52408 5.62664 5.66726 5.71003 5.74650 5.77904 5.85193 5.88484 5.99444 6.04139 6.11368 6.14453 6.56890 6.74597 6.90936 7.08892 7.52130 7.70332 8.31623 8.42876 9.53623 10.09865 10.45013 11.47266 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033677 B = 0.003550 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.228124 B = 7884.467826 C = 8103.003856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.105 3.895 4 C 0.144 3.856 5 N -0.730 5.730 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.933 5.933 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.516 3.484 15 O -0.533 6.533 16 C -0.101 4.101 17 H 0.097 0.903 18 C -0.102 4.102 19 C -0.149 4.149 20 C 0.065 3.935 21 O -0.385 6.385 22 C 0.066 3.934 23 C -0.144 4.144 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.020 0.980 30 H 0.018 0.982 31 H 0.384 0.616 32 H 0.256 0.744 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.040 -20.800 4.182 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.346 5.346 3 C -0.017 4.017 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.303 3.697 15 O -0.409 6.409 16 C -0.122 4.122 17 H 0.115 0.885 18 C -0.140 4.140 19 C -0.187 4.187 20 C -0.012 4.012 21 O -0.304 6.304 22 C -0.010 4.010 23 C -0.182 4.182 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.545 -20.781 4.121 24.127 hybrid contribution 0.607 0.854 -0.721 1.271 sum -10.937 -19.927 3.400 22.984 Atomic orbital electron populations 1.21795 0.79713 1.03638 1.01178 1.47837 1.06897 1.06330 1.73574 1.21750 0.97685 0.83226 0.99071 1.20907 0.95015 0.89367 0.93199 1.42217 1.67071 1.21627 1.06612 1.19205 1.29450 1.02412 0.85946 0.91221 1.24753 1.01211 0.98060 0.96954 1.69662 1.44974 1.19572 1.23965 0.86157 0.77685 0.79239 0.82923 1.21683 1.21697 1.20748 1.20577 0.87904 0.85095 0.76107 1.90716 1.14318 1.87209 1.48609 1.21063 1.00961 0.92958 0.97241 0.88503 1.20444 0.98489 0.94387 1.00657 1.21146 1.00599 0.98117 0.98799 1.22376 0.90556 0.94528 0.93761 1.87451 1.33702 1.52056 1.57169 1.22943 0.97155 0.90563 0.90321 1.21848 0.99444 1.01527 0.95419 0.92434 0.90070 0.92093 0.90487 0.89670 0.96214 0.96434 0.78241 0.93462 0.91229 0.91392 0.90945 0.91056 0.92831 0.89850 0.92714 0.89193 0.90005 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 9.36 59.85 0.56 1.36 16 2 N -0.61 -8.83 2.87 -181.57 -0.52 -9.35 16 3 C 0.11 1.85 5.52 -4.04 -0.02 1.83 16 4 C 0.14 3.08 6.58 -4.04 -0.03 3.06 16 5 N -0.73 -19.36 5.60 -59.90 -0.34 -19.69 16 6 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 7 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 10 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.52 7.84 6.35 -10.98 -0.07 7.77 16 15 O -0.53 -10.44 15.99 5.56 0.09 -10.35 16 16 C -0.10 -1.11 1.61 -92.33 -0.15 -1.26 16 17 H 0.10 0.93 6.16 -51.93 -0.32 0.61 16 18 C -0.10 -1.06 4.24 -29.29 -0.12 -1.18 16 19 C -0.15 -1.20 5.47 -29.34 -0.16 -1.36 16 20 C 0.06 0.51 6.38 37.74 0.24 0.75 16 21 O -0.38 -3.61 10.17 -33.68 -0.34 -3.96 16 22 C 0.07 0.55 6.67 37.58 0.25 0.80 16 23 C -0.14 -1.44 4.85 -27.49 -0.13 -1.57 16 24 H 0.06 0.47 7.89 -51.93 -0.41 0.06 16 25 H 0.08 0.79 7.84 -51.93 -0.41 0.38 16 26 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 27 H 0.08 1.24 7.97 -51.93 -0.41 0.83 16 28 H 0.08 1.69 7.35 -51.93 -0.38 1.30 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.07 0.77 7.60 -51.93 -0.39 0.38 16 34 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 37 H 0.05 0.41 6.98 -51.93 -0.36 0.04 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 42 H 0.07 0.76 6.84 -51.93 -0.35 0.41 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -34.26 333.92 -7.34 -41.60 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.08 Total: 4.37 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 0.12 Total: 2.61 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.13 Total: -57.11 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.25 Total: -14.30 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.26 -7.34 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691304027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.104 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds