Wall clock time and date at job start Mon Mar 30 2020 01:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46492 * 119.99980 * 2 1 4 4 C 1.53004 * 109.47237 * 270.00273 * 3 2 1 5 5 N 1.46500 * 109.47490 * 180.02562 * 4 3 2 6 6 C 1.36935 * 120.00227 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99815 * 359.97438 * 6 5 4 8 8 C 1.38818 * 119.99924 * 180.02562 * 6 5 4 9 9 N 1.31613 * 119.99921 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 119.99721 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47016 * 89.99805 * 10 8 6 12 12 H 1.48498 * 109.47201 * 209.99702 * 10 8 6 13 13 H 1.48502 * 109.47625 * 330.00057 * 10 8 6 14 14 C 1.34779 * 119.99993 * 180.02562 * 2 1 3 15 15 O 1.21276 * 120.00130 * 186.06837 * 14 2 1 16 16 C 1.50701 * 119.99844 * 6.07420 * 14 2 1 17 17 H 1.09002 * 109.53574 * 333.90894 * 16 14 2 18 18 C 1.54206 * 109.53588 * 213.74670 * 16 14 2 19 19 C 1.46288 * 111.98679 * 162.52116 * 18 16 14 20 20 C 1.54121 * 112.19993 * 61.41451 * 19 18 16 21 21 O 1.40321 * 108.70177 * 280.43624 * 20 19 18 22 22 C 1.43997 * 116.57902 * 95.04852 * 21 20 19 23 23 C 1.50627 * 109.60739 * 94.11729 * 16 14 2 24 24 H 1.09004 * 109.46982 * 245.40824 * 1 2 3 25 25 H 1.09002 * 109.47221 * 5.40119 * 1 2 3 26 26 H 1.08994 * 109.47463 * 125.40949 * 1 2 3 27 27 H 1.09000 * 109.47216 * 30.00200 * 3 2 1 28 28 H 1.09002 * 109.47241 * 150.00259 * 3 2 1 29 29 H 1.09000 * 109.46958 * 300.00085 * 4 3 2 30 30 H 1.09002 * 109.47017 * 59.99849 * 4 3 2 31 31 H 0.97008 * 119.99499 * 359.97438 * 5 4 3 32 32 H 0.97007 * 120.00060 * 180.02562 * 9 8 6 33 33 H 1.08994 * 108.97932 * 283.16856 * 18 16 14 34 34 H 1.08997 * 108.97464 * 41.96239 * 18 16 14 35 35 H 1.08995 * 108.93640 * 182.11400 * 19 18 16 36 36 H 1.08999 * 108.93422 * 300.71696 * 19 18 16 37 37 H 1.08992 * 109.59662 * 40.20416 * 20 19 18 38 38 H 1.09001 * 109.59206 * 160.67632 * 20 19 18 39 39 H 1.08998 * 108.69560 * 78.90432 * 22 21 20 40 40 H 1.08994 * 108.69276 * 196.87788 * 22 21 20 41 41 H 1.08998 * 108.87883 * 331.01146 * 23 16 14 42 42 H 1.08996 * 108.87605 * 89.47235 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 7 3.1855 2.9788 -1.4426 6 6 3.5274 3.5720 -2.6285 7 1 3.2570 3.1045 -3.5638 8 6 4.2225 4.7736 -2.6285 9 7 4.5523 5.3430 -1.4887 10 14 4.6895 5.5824 -4.2462 11 1 3.6012 6.4977 -4.6743 12 1 5.9451 6.3551 -4.0690 13 1 4.8932 4.5374 -5.2815 14 6 2.1389 -1.1672 -0.0005 15 8 3.3466 -1.1702 0.1105 16 6 1.3917 -2.4686 -0.1392 17 1 0.3729 -2.3448 0.2279 18 6 2.1056 -3.5629 0.6798 19 6 1.2394 -4.7159 0.9254 20 6 0.7952 -5.3996 -0.3824 21 8 -0.2583 -4.6602 -0.9413 22 6 0.0972 -3.6866 -1.9410 23 6 1.3588 -2.8807 -1.5876 24 1 -0.3633 -0.4277 0.9345 25 1 -0.3634 1.0231 -0.0967 26 1 -0.3634 -0.5954 -0.8375 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5138 29 1 3.0415 0.9508 -1.9564 30 1 1.5000 1.8407 -1.9563 31 1 3.4280 3.3989 -0.6025 32 1 5.0377 6.1829 -1.4886 33 1 2.9898 -3.8935 0.1348 34 1 2.4157 -3.1437 1.6369 35 1 1.7784 -5.4392 1.5373 36 1 0.3550 -4.3843 1.4693 37 1 1.6312 -5.4305 -1.0810 38 1 0.4569 -6.4134 -0.1682 39 1 0.2655 -4.2022 -2.8865 40 1 -0.7356 -2.9948 -2.0666 41 1 1.3916 -1.9862 -2.2096 42 1 2.2375 -3.4891 -1.8012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691304027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:36 Heat of formation + Delta-G solvation = -98.628987 kcal Electronic energy + Delta-G solvation = -21444.096632 eV Core-core repulsion = 18230.378689 eV Total energy + Delta-G solvation = -3213.717943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57861 -39.76425 -37.47738 -36.11970 -35.72924 -33.74714 -33.21908 -30.13187 -28.26999 -27.47404 -26.86886 -25.52500 -23.51022 -22.04740 -21.77655 -20.05918 -19.23218 -18.35630 -17.82403 -17.24826 -16.99910 -16.48878 -16.17963 -15.95146 -15.34285 -15.27819 -15.11736 -14.92576 -14.38787 -14.33694 -13.97053 -13.88110 -13.38030 -13.14474 -13.09182 -12.86958 -12.75894 -12.62387 -12.36906 -12.20256 -12.15237 -11.89972 -11.72678 -11.65710 -11.38403 -11.00607 -10.75717 -10.36105 -9.72627 -9.10148 -8.00281 -5.31621 1.44722 1.47796 1.52749 1.56457 1.93287 2.53855 2.92778 3.32869 3.42160 3.53030 3.79522 3.95911 4.02321 4.05960 4.10403 4.20644 4.28524 4.32239 4.35988 4.50355 4.52148 4.60420 4.66344 4.69935 4.81626 4.89439 4.93807 4.97635 5.01192 5.05865 5.10662 5.16102 5.22172 5.37478 5.40431 5.51985 6.20944 6.36476 6.46769 7.12408 7.27045 7.98252 8.23742 9.23149 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033677 B = 0.003550 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.228124 B = 7884.467826 C = 8103.003856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.611 5.611 3 C 0.119 3.881 4 C 0.151 3.849 5 N -0.744 5.744 6 C -0.253 4.253 7 H 0.074 0.926 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.280 1.280 12 H -0.293 1.293 13 H -0.271 1.271 14 C 0.509 3.491 15 O -0.587 6.587 16 C -0.090 4.090 17 H 0.119 0.881 18 C -0.099 4.099 19 C -0.144 4.144 20 C 0.062 3.938 21 O -0.395 6.395 22 C 0.071 3.929 23 C -0.141 4.141 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.057 0.943 29 H -0.002 1.002 30 H 0.033 0.967 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.130 -21.952 3.453 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.343 5.343 3 C -0.005 4.005 4 C 0.023 3.977 5 N -0.387 5.387 6 C -0.385 4.385 7 H 0.092 0.908 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.207 1.207 12 H -0.219 1.219 13 H -0.196 1.196 14 C 0.298 3.702 15 O -0.467 6.467 16 C -0.111 4.111 17 H 0.137 0.863 18 C -0.137 4.137 19 C -0.181 4.181 20 C -0.015 4.015 21 O -0.314 6.314 22 C -0.005 4.005 23 C -0.179 4.179 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.016 0.984 30 H 0.051 0.949 31 H 0.207 0.793 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.701 -21.970 3.383 26.112 hybrid contribution 1.246 1.169 -0.472 1.772 sum -12.455 -20.801 2.912 24.419 Atomic orbital electron populations 1.22139 0.76535 1.04888 1.03478 1.47942 1.08754 1.04851 1.72782 1.21384 0.97458 0.85358 0.96312 1.20947 0.94324 0.86758 0.95664 1.42410 1.67639 1.23039 1.05646 1.19597 1.29236 1.02715 0.86909 0.90818 1.25650 1.01518 0.98821 1.00560 1.69821 1.45889 1.19906 1.26193 0.85064 0.77154 0.78226 0.78829 1.20684 1.21942 1.19614 1.21424 0.87531 0.86506 0.74733 1.90689 1.16870 1.88031 1.51085 1.21076 1.01239 0.90542 0.98272 0.86330 1.20438 0.98589 0.95062 0.99566 1.21100 1.00300 0.97359 0.99364 1.22494 0.90434 0.95187 0.93396 1.87443 1.34313 1.52231 1.57432 1.22973 0.96470 0.90593 0.90497 1.21828 1.00485 1.01277 0.94300 0.89934 0.89430 0.89967 0.88626 0.92483 0.98448 0.94938 0.79275 0.93733 0.92567 0.92796 0.89527 0.90669 0.92844 0.88039 0.91644 0.87636 0.91020 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 9.36 127.77 1.20 2.42 16 2 N -0.61 -17.11 2.87 -846.76 -2.43 -19.54 16 3 C 0.12 4.22 5.52 86.38 0.48 4.70 16 4 C 0.15 6.53 6.58 86.38 0.57 7.10 16 5 N -0.74 -40.10 5.60 -343.44 -1.92 -42.02 16 6 C -0.25 -14.76 9.99 84.04 0.84 -13.92 16 7 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 8 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 9 N -0.97 -60.53 13.06 21.65 0.28 -60.25 16 10 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 14 C 0.51 15.48 6.35 87.66 0.56 16.04 16 15 O -0.59 -24.01 15.99 -3.02 -0.05 -24.06 16 16 C -0.09 -1.88 1.61 -11.90 -0.02 -1.89 16 17 H 0.12 1.94 6.16 -2.39 -0.01 1.93 16 18 C -0.10 -1.98 4.24 28.94 0.12 -1.86 16 19 C -0.14 -2.03 5.47 28.91 0.16 -1.87 16 20 C 0.06 0.82 6.38 72.36 0.46 1.28 16 21 O -0.40 -6.25 10.17 -143.44 -1.46 -7.71 16 22 C 0.07 0.98 6.67 72.26 0.48 1.46 16 23 C -0.14 -2.62 4.85 30.10 0.15 -2.48 16 24 H 0.08 1.06 7.89 -2.39 -0.02 1.04 16 25 H 0.09 1.44 7.84 -2.39 -0.02 1.42 16 26 H 0.08 1.10 7.67 -2.39 -0.02 1.08 16 27 H 0.10 3.03 7.97 -2.39 -0.02 3.01 16 28 H 0.06 2.36 7.35 -2.39 -0.02 2.34 16 29 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.38 21.21 7.67 -92.70 -0.71 20.50 16 32 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 33 H 0.06 1.27 7.60 -2.39 -0.02 1.25 16 34 H 0.05 1.23 8.00 -2.39 -0.02 1.21 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 37 H 0.05 0.71 6.98 -2.39 -0.02 0.70 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.49 7.75 -2.39 -0.02 1.47 16 42 H 0.07 1.34 6.84 -2.39 -0.02 1.32 16 Total: -1.00 -75.03 333.92 2.19 -72.84 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.28 Total: 24.63 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.46 Total: 7.13 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -4.07 Total: -121.81 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.51 Total: -31.77 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -75.03 2.19 -72.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691304027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.784 kcal (2) G-P(sol) polarization free energy of solvation -75.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds