Wall clock time and date at job start Mon Mar 30 2020 01:27:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.46492 * 119.99980 * 2 1
4 4 C 1.53004 * 109.47237 * 270.00273 * 3 2 1
5 5 N 1.46500 * 109.47490 * 180.02562 * 4 3 2
6 6 C 1.36935 * 120.00227 * 180.02562 * 5 4 3
7 7 H 1.08000 * 119.99815 * 359.97438 * 6 5 4
8 8 C 1.38818 * 119.99924 * 180.02562 * 6 5 4
9 9 N 1.31613 * 119.99921 * 359.97438 * 8 6 5
10 10 Si 1.86792 * 119.99721 * 179.97438 * 8 6 5
11 11 H 1.48504 * 109.47016 * 89.99805 * 10 8 6
12 12 H 1.48498 * 109.47201 * 209.99702 * 10 8 6
13 13 H 1.48502 * 109.47625 * 330.00057 * 10 8 6
14 14 C 1.34779 * 119.99993 * 180.02562 * 2 1 3
15 15 O 1.21276 * 120.00130 * 186.06837 * 14 2 1
16 16 C 1.50701 * 119.99844 * 6.07420 * 14 2 1
17 17 H 1.09002 * 109.53574 * 333.90894 * 16 14 2
18 18 C 1.54206 * 109.53588 * 213.74670 * 16 14 2
19 19 C 1.46288 * 111.98679 * 162.52116 * 18 16 14
20 20 C 1.54121 * 112.19993 * 61.41451 * 19 18 16
21 21 O 1.40321 * 108.70177 * 280.43624 * 20 19 18
22 22 C 1.43997 * 116.57902 * 95.04852 * 21 20 19
23 23 C 1.50627 * 109.60739 * 94.11729 * 16 14 2
24 24 H 1.09004 * 109.46982 * 245.40824 * 1 2 3
25 25 H 1.09002 * 109.47221 * 5.40119 * 1 2 3
26 26 H 1.08994 * 109.47463 * 125.40949 * 1 2 3
27 27 H 1.09000 * 109.47216 * 30.00200 * 3 2 1
28 28 H 1.09002 * 109.47241 * 150.00259 * 3 2 1
29 29 H 1.09000 * 109.46958 * 300.00085 * 4 3 2
30 30 H 1.09002 * 109.47017 * 59.99849 * 4 3 2
31 31 H 0.97008 * 119.99499 * 359.97438 * 5 4 3
32 32 H 0.97007 * 120.00060 * 180.02562 * 9 8 6
33 33 H 1.08994 * 108.97932 * 283.16856 * 18 16 14
34 34 H 1.08997 * 108.97464 * 41.96239 * 18 16 14
35 35 H 1.08995 * 108.93640 * 182.11400 * 19 18 16
36 36 H 1.08999 * 108.93422 * 300.71696 * 19 18 16
37 37 H 1.08992 * 109.59662 * 40.20416 * 20 19 18
38 38 H 1.09001 * 109.59206 * 160.67632 * 20 19 18
39 39 H 1.08998 * 108.69560 * 78.90432 * 22 21 20
40 40 H 1.08994 * 108.69276 * 196.87788 * 22 21 20
41 41 H 1.08998 * 108.87883 * 331.01146 * 23 16 14
42 42 H 1.08996 * 108.87605 * 89.47235 * 23 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4524 1.7104 -1.4425
5 7 3.1855 2.9788 -1.4426
6 6 3.5274 3.5720 -2.6285
7 1 3.2570 3.1045 -3.5638
8 6 4.2225 4.7736 -2.6285
9 7 4.5523 5.3430 -1.4887
10 14 4.6895 5.5824 -4.2462
11 1 3.6012 6.4977 -4.6743
12 1 5.9451 6.3551 -4.0690
13 1 4.8932 4.5374 -5.2815
14 6 2.1389 -1.1672 -0.0005
15 8 3.3466 -1.1702 0.1105
16 6 1.3917 -2.4686 -0.1392
17 1 0.3729 -2.3448 0.2279
18 6 2.1056 -3.5629 0.6798
19 6 1.2394 -4.7159 0.9254
20 6 0.7952 -5.3996 -0.3824
21 8 -0.2583 -4.6602 -0.9413
22 6 0.0972 -3.6866 -1.9410
23 6 1.3588 -2.8807 -1.5876
24 1 -0.3633 -0.4277 0.9345
25 1 -0.3634 1.0231 -0.0967
26 1 -0.3634 -0.5954 -0.8375
27 1 1.6084 2.0283 0.5139
28 1 3.1499 1.1383 0.5138
29 1 3.0415 0.9508 -1.9564
30 1 1.5000 1.8407 -1.9563
31 1 3.4280 3.3989 -0.6025
32 1 5.0377 6.1829 -1.4886
33 1 2.9898 -3.8935 0.1348
34 1 2.4157 -3.1437 1.6369
35 1 1.7784 -5.4392 1.5373
36 1 0.3550 -4.3843 1.4693
37 1 1.6312 -5.4305 -1.0810
38 1 0.4569 -6.4134 -0.1682
39 1 0.2655 -4.2022 -2.8865
40 1 -0.7356 -2.9948 -2.0666
41 1 1.3916 -1.9862 -2.2096
42 1 2.2375 -3.4891 -1.8012
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001691304027.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:27:36
Heat of formation + Delta-G solvation = -98.628987 kcal
Electronic energy + Delta-G solvation = -21444.096632 eV
Core-core repulsion = 18230.378689 eV
Total energy + Delta-G solvation = -3213.717943 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 270.173 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.57861 -39.76425 -37.47738 -36.11970 -35.72924 -33.74714 -33.21908 -30.13187
-28.26999 -27.47404 -26.86886 -25.52500 -23.51022 -22.04740 -21.77655 -20.05918
-19.23218 -18.35630 -17.82403 -17.24826 -16.99910 -16.48878 -16.17963 -15.95146
-15.34285 -15.27819 -15.11736 -14.92576 -14.38787 -14.33694 -13.97053 -13.88110
-13.38030 -13.14474 -13.09182 -12.86958 -12.75894 -12.62387 -12.36906 -12.20256
-12.15237 -11.89972 -11.72678 -11.65710 -11.38403 -11.00607 -10.75717 -10.36105
-9.72627 -9.10148 -8.00281 -5.31621 1.44722 1.47796 1.52749 1.56457
1.93287 2.53855 2.92778 3.32869 3.42160 3.53030 3.79522 3.95911
4.02321 4.05960 4.10403 4.20644 4.28524 4.32239 4.35988 4.50355
4.52148 4.60420 4.66344 4.69935 4.81626 4.89439 4.93807 4.97635
5.01192 5.05865 5.10662 5.16102 5.22172 5.37478 5.40431 5.51985
6.20944 6.36476 6.46769 7.12408 7.27045 7.98252 8.23742 9.23149
Molecular weight = 270.17amu
Principal moments of inertia in cm(-1)
A = 0.033677 B = 0.003550 C = 0.003455
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 831.228124 B = 7884.467826 C = 8103.003856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.071 3.929
2 N -0.611 5.611
3 C 0.119 3.881
4 C 0.151 3.849
5 N -0.744 5.744
6 C -0.253 4.253
7 H 0.074 0.926
8 C -0.073 4.073
9 N -0.968 5.968
10 Si 0.979 3.021
11 H -0.280 1.280
12 H -0.293 1.293
13 H -0.271 1.271
14 C 0.509 3.491
15 O -0.587 6.587
16 C -0.090 4.090
17 H 0.119 0.881
18 C -0.099 4.099
19 C -0.144 4.144
20 C 0.062 3.938
21 O -0.395 6.395
22 C 0.071 3.929
23 C -0.141 4.141
24 H 0.082 0.918
25 H 0.087 0.913
26 H 0.082 0.918
27 H 0.096 0.904
28 H 0.057 0.943
29 H -0.002 1.002
30 H 0.033 0.967
31 H 0.375 0.625
32 H 0.254 0.746
33 H 0.056 0.944
34 H 0.053 0.947
35 H 0.086 0.914
36 H 0.075 0.925
37 H 0.053 0.947
38 H 0.102 0.898
39 H 0.065 0.935
40 H 0.106 0.894
41 H 0.071 0.929
42 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.130 -21.952 3.453 26.333
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.343 5.343
3 C -0.005 4.005
4 C 0.023 3.977
5 N -0.387 5.387
6 C -0.385 4.385
7 H 0.092 0.908
8 C -0.265 4.265
9 N -0.618 5.618
10 Si 0.807 3.193
11 H -0.207 1.207
12 H -0.219 1.219
13 H -0.196 1.196
14 C 0.298 3.702
15 O -0.467 6.467
16 C -0.111 4.111
17 H 0.137 0.863
18 C -0.137 4.137
19 C -0.181 4.181
20 C -0.015 4.015
21 O -0.314 6.314
22 C -0.005 4.005
23 C -0.179 4.179
24 H 0.101 0.899
25 H 0.106 0.894
26 H 0.100 0.900
27 H 0.114 0.886
28 H 0.075 0.925
29 H 0.016 0.984
30 H 0.051 0.949
31 H 0.207 0.793
32 H 0.063 0.937
33 H 0.074 0.926
34 H 0.072 0.928
35 H 0.105 0.895
36 H 0.093 0.907
37 H 0.072 0.928
38 H 0.120 0.880
39 H 0.084 0.916
40 H 0.124 0.876
41 H 0.090 0.910
42 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -13.701 -21.970 3.383 26.112
hybrid contribution 1.246 1.169 -0.472 1.772
sum -12.455 -20.801 2.912 24.419
Atomic orbital electron populations
1.22139 0.76535 1.04888 1.03478 1.47942 1.08754 1.04851 1.72782
1.21384 0.97458 0.85358 0.96312 1.20947 0.94324 0.86758 0.95664
1.42410 1.67639 1.23039 1.05646 1.19597 1.29236 1.02715 0.86909
0.90818 1.25650 1.01518 0.98821 1.00560 1.69821 1.45889 1.19906
1.26193 0.85064 0.77154 0.78226 0.78829 1.20684 1.21942 1.19614
1.21424 0.87531 0.86506 0.74733 1.90689 1.16870 1.88031 1.51085
1.21076 1.01239 0.90542 0.98272 0.86330 1.20438 0.98589 0.95062
0.99566 1.21100 1.00300 0.97359 0.99364 1.22494 0.90434 0.95187
0.93396 1.87443 1.34313 1.52231 1.57432 1.22973 0.96470 0.90593
0.90497 1.21828 1.00485 1.01277 0.94300 0.89934 0.89430 0.89967
0.88626 0.92483 0.98448 0.94938 0.79275 0.93733 0.92567 0.92796
0.89527 0.90669 0.92844 0.88039 0.91644 0.87636 0.91020 0.91512
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.22 9.36 127.77 1.20 2.42 16
2 N -0.61 -17.11 2.87 -846.76 -2.43 -19.54 16
3 C 0.12 4.22 5.52 86.38 0.48 4.70 16
4 C 0.15 6.53 6.58 86.38 0.57 7.10 16
5 N -0.74 -40.10 5.60 -343.44 -1.92 -42.02 16
6 C -0.25 -14.76 9.99 84.04 0.84 -13.92 16
7 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16
8 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16
9 N -0.97 -60.53 13.06 21.65 0.28 -60.25 16
10 Si 0.98 46.96 29.55 68.60 2.03 48.99 16
11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16
12 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16
13 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16
14 C 0.51 15.48 6.35 87.66 0.56 16.04 16
15 O -0.59 -24.01 15.99 -3.02 -0.05 -24.06 16
16 C -0.09 -1.88 1.61 -11.90 -0.02 -1.89 16
17 H 0.12 1.94 6.16 -2.39 -0.01 1.93 16
18 C -0.10 -1.98 4.24 28.94 0.12 -1.86 16
19 C -0.14 -2.03 5.47 28.91 0.16 -1.87 16
20 C 0.06 0.82 6.38 72.36 0.46 1.28 16
21 O -0.40 -6.25 10.17 -143.44 -1.46 -7.71 16
22 C 0.07 0.98 6.67 72.26 0.48 1.46 16
23 C -0.14 -2.62 4.85 30.10 0.15 -2.48 16
24 H 0.08 1.06 7.89 -2.39 -0.02 1.04 16
25 H 0.09 1.44 7.84 -2.39 -0.02 1.42 16
26 H 0.08 1.10 7.67 -2.39 -0.02 1.08 16
27 H 0.10 3.03 7.97 -2.39 -0.02 3.01 16
28 H 0.06 2.36 7.35 -2.39 -0.02 2.34 16
29 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16
30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16
31 H 0.38 21.21 7.67 -92.70 -0.71 20.50 16
32 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16
33 H 0.06 1.27 7.60 -2.39 -0.02 1.25 16
34 H 0.05 1.23 8.00 -2.39 -0.02 1.21 16
35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16
36 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16
37 H 0.05 0.71 6.98 -2.39 -0.02 0.70 16
38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16
39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
40 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16
41 H 0.07 1.49 7.75 -2.39 -0.02 1.47 16
42 H 0.07 1.34 6.84 -2.39 -0.02 1.32 16
Total: -1.00 -75.03 333.92 2.19 -72.84
By element:
Atomic # 1 Polarization: 24.34 SS G_CDS: 0.28 Total: 24.63 kcal
Atomic # 6 Polarization: 1.67 SS G_CDS: 5.46 Total: 7.13 kcal
Atomic # 7 Polarization: -117.74 SS G_CDS: -4.07 Total: -121.81 kcal
Atomic # 8 Polarization: -30.27 SS G_CDS: -1.51 Total: -31.77 kcal
Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal
Total: -75.03 2.19 -72.84 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691304027.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.784 kcal
(2) G-P(sol) polarization free energy of solvation -75.030 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.814 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.845 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.629 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds