Wall clock time and date at job start Mon Mar 30 2020 01:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00352 * 2 1 4 4 C 1.52991 * 109.47615 * 184.98090 * 3 2 1 5 5 C 1.50705 * 112.84685 * 304.64632 * 4 3 2 6 6 O 1.21286 * 119.99620 * 116.24223 * 5 4 3 7 7 N 1.34771 * 120.00262 * 295.96801 * 5 4 3 8 8 C 1.46506 * 119.99624 * 355.43173 * 7 5 4 9 9 C 1.46493 * 120.00375 * 175.42866 * 7 5 4 10 10 C 1.53009 * 109.47082 * 90.00165 * 9 7 5 11 11 N 1.46498 * 109.47091 * 180.02562 * 10 9 7 12 12 C 1.36942 * 119.99520 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00044 * 359.97438 * 12 11 10 14 14 C 1.38818 * 119.99760 * 179.97438 * 12 11 10 15 15 N 1.31618 * 119.99922 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99888 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47425 * 89.99858 * 16 14 12 18 18 H 1.48500 * 109.47169 * 209.99887 * 16 14 12 19 19 H 1.48503 * 109.47424 * 329.99747 * 16 14 12 20 20 C 1.53783 * 113.69333 * 75.91514 * 4 3 2 21 21 C 1.53774 * 87.08047 * 89.12885 * 20 4 3 22 22 C 1.53782 * 113.61755 * 173.45400 * 4 3 2 23 23 H 1.08999 * 109.46762 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46684 * 300.00050 * 1 2 3 25 25 H 1.09001 * 109.46824 * 60.00009 * 1 2 3 26 26 H 1.08997 * 109.46733 * 64.97490 * 3 2 1 27 27 H 1.09010 * 109.46490 * 304.98074 * 3 2 1 28 28 H 1.09004 * 109.46570 * 94.42205 * 8 7 5 29 29 H 1.08995 * 109.46879 * 214.41995 * 8 7 5 30 30 H 1.08994 * 109.46987 * 334.42564 * 8 7 5 31 31 H 1.08996 * 109.47692 * 209.99864 * 9 7 5 32 32 H 1.09002 * 109.47087 * 330.00430 * 9 7 5 33 33 H 1.09001 * 109.47036 * 300.00545 * 10 9 7 34 34 H 1.09002 * 109.46943 * 60.00177 * 10 9 7 35 35 H 0.96998 * 120.00200 * 359.97438 * 11 10 9 36 36 H 0.97002 * 119.99640 * 179.97438 * 15 14 12 37 37 H 1.09000 * 113.61545 * 203.67778 * 20 4 3 38 38 H 1.08998 * 113.61300 * 334.57558 * 20 4 3 39 39 H 1.08998 * 113.61709 * 270.88195 * 21 20 4 40 40 H 1.08998 * 113.61408 * 139.98024 * 21 20 4 41 41 H 1.08997 * 113.61523 * 25.34131 * 22 4 3 42 42 H 1.08997 * 113.61674 * 156.24882 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5305 1.1869 -0.1252 5 6 4.1393 0.3145 0.9422 6 8 4.7014 -0.7156 0.6359 7 7 4.0639 0.6818 2.2368 8 6 3.4796 1.9757 2.5982 9 6 4.5662 -0.2128 3.2824 10 6 6.0422 0.0909 3.5478 11 7 6.5447 -0.8041 4.5930 12 6 7.8491 -0.7162 5.0008 13 1 8.5073 0.0127 4.5516 14 6 8.3251 -1.5639 5.9917 15 7 9.5789 -1.4797 6.3833 16 14 7.1863 -2.8240 6.7692 17 1 7.2520 -4.0922 5.9994 18 1 7.6077 -3.0736 8.1711 19 1 5.7939 -2.3081 6.7553 20 6 4.0087 0.8458 -1.5464 21 6 4.0519 2.3601 -1.8106 22 6 4.2420 2.5396 -0.2952 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7610 1.8141 0.9312 27 1 1.6198 1.8770 -0.8421 28 1 2.4236 1.8441 2.8346 29 1 3.9990 2.3788 3.4675 30 1 3.5812 2.6667 1.7614 31 1 3.9938 -0.0600 4.1973 32 1 4.4611 -1.2477 2.9566 33 1 6.6148 -0.0619 2.6329 34 1 6.1473 1.1258 3.8736 35 1 5.9534 -1.4585 4.9968 36 1 9.9114 -2.0718 7.0759 37 1 4.9888 0.3695 -1.5748 38 1 3.2638 0.3194 -2.1432 39 1 3.1113 2.7652 -2.1837 40 1 4.9131 2.6762 -2.3991 41 1 3.6854 3.3807 0.1181 42 1 5.2858 2.5264 0.0185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691397673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:04 Heat of formation + Delta-G solvation = -61.867169 kcal Electronic energy + Delta-G solvation = -21679.353317 eV Core-core repulsion = 18467.229486 eV Total energy + Delta-G solvation = -3212.123831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.93683 -39.29496 -38.06573 -37.39651 -36.16946 -33.68365 -30.95352 -29.55253 -27.75938 -27.25287 -26.49954 -25.84064 -24.61575 -23.21179 -21.15829 -19.84860 -19.44978 -18.29641 -17.54938 -17.13720 -16.75448 -16.62109 -16.41675 -16.18190 -15.54915 -15.32746 -15.23695 -14.92259 -14.66392 -14.06394 -13.71392 -13.50030 -13.41023 -13.20697 -13.12239 -12.96529 -12.94275 -12.65080 -12.38728 -12.23204 -12.13462 -12.10176 -11.85741 -11.42876 -11.25588 -11.05485 -10.73568 -10.44130 -9.69220 -9.40266 -8.08180 -5.44180 1.34625 1.40366 1.46713 1.63583 1.95915 2.44725 2.68965 3.22727 3.30448 3.58945 3.68645 3.74370 3.84270 3.87818 4.11650 4.14280 4.27155 4.38245 4.42871 4.48246 4.53869 4.55315 4.60295 4.67911 4.76255 4.80461 4.87036 4.92598 4.96210 5.01284 5.02929 5.11871 5.15961 5.43074 5.51457 5.68049 6.14738 6.23445 6.43097 6.99741 7.20025 7.73098 7.94835 9.13210 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.004228 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.967880 B = 6620.556472 C = 7077.678301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.421 6.421 3 C 0.086 3.914 4 C -0.108 4.108 5 C 0.524 3.476 6 O -0.589 6.589 7 N -0.609 5.609 8 C 0.061 3.939 9 C 0.118 3.882 10 C 0.152 3.848 11 N -0.755 5.755 12 C -0.244 4.244 13 H 0.052 0.948 14 C -0.060 4.060 15 N -0.981 5.981 16 Si 0.959 3.041 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.246 1.246 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.116 4.116 23 H 0.083 0.917 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.000 1.000 34 H 0.035 0.965 35 H 0.368 0.632 36 H 0.261 0.739 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.340 12.976 -15.280 31.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.341 6.341 3 C 0.010 3.990 4 C -0.111 4.111 5 C 0.313 3.687 6 O -0.468 6.468 7 N -0.341 5.341 8 C -0.080 4.080 9 C -0.006 4.006 10 C 0.025 3.975 11 N -0.402 5.402 12 C -0.375 4.375 13 H 0.070 0.930 14 C -0.252 4.252 15 N -0.631 5.631 16 Si 0.785 3.215 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.170 1.170 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.153 4.153 23 H 0.102 0.898 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.018 0.982 34 H 0.053 0.947 35 H 0.201 0.799 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.130 0.870 40 H 0.099 0.901 41 H 0.135 0.865 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.750 12.390 -15.431 30.914 hybrid contribution 0.195 -1.156 0.787 1.412 sum -23.555 11.233 -14.645 29.925 Atomic orbital electron populations 1.22901 0.79142 1.03412 1.01361 1.87954 1.21713 1.28771 1.95667 1.22459 0.88284 0.85063 1.03203 1.22297 0.96347 0.98187 0.94262 1.21096 0.78203 0.85693 0.83668 1.90674 1.45598 1.28225 1.82321 1.47812 1.60569 1.20450 1.05280 1.22389 0.99121 0.82951 1.03525 1.21383 0.93389 0.94310 0.91503 1.20931 0.93496 0.93463 0.89650 1.42523 1.09270 1.43043 1.45334 1.18989 0.87136 1.15514 1.15859 0.92986 1.25559 0.97806 1.01874 0.99935 1.69888 1.16158 1.42794 1.34283 0.85360 0.79662 0.79002 0.77488 1.20803 1.21345 1.17050 1.22798 1.01075 0.98646 0.93450 1.22877 1.04132 0.93558 0.95445 1.23017 1.00527 0.93791 0.97950 0.89841 0.92746 0.92155 0.90342 0.89134 0.90504 0.90296 0.88088 0.87952 0.92312 0.98233 0.94656 0.79866 0.93042 0.92108 0.90869 0.86984 0.90123 0.86549 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.20 10.34 -148.98 -1.54 -10.74 16 3 C 0.09 1.31 4.94 71.98 0.36 1.66 16 4 C -0.11 -2.25 0.46 -52.40 -0.02 -2.28 16 5 C 0.52 16.73 6.33 87.66 0.56 17.29 16 6 O -0.59 -25.63 15.74 -3.05 -0.05 -25.68 16 7 N -0.61 -17.14 2.87 -846.75 -2.43 -19.57 16 8 C 0.06 1.02 8.99 127.77 1.15 2.17 16 9 C 0.12 4.05 5.51 86.38 0.48 4.52 16 10 C 0.15 6.57 6.58 86.38 0.57 7.14 16 11 N -0.76 -38.57 5.41 -343.43 -1.86 -40.43 16 12 C -0.24 -14.94 10.47 84.03 0.88 -14.06 16 13 H 0.05 3.49 8.06 -2.91 -0.02 3.46 16 14 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 15 N -0.98 -64.99 13.97 21.65 0.30 -64.69 16 16 Si 0.96 47.10 27.73 68.60 1.90 49.00 16 17 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 18 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 19 H -0.25 -10.74 6.52 99.48 0.65 -10.10 16 20 C -0.12 -2.64 6.91 31.12 0.21 -2.43 16 21 C -0.12 -1.54 7.73 31.12 0.24 -1.30 16 22 C -0.12 -1.64 5.56 31.12 0.17 -1.47 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.08 0.87 5.78 -2.39 -0.01 0.86 16 27 H 0.09 0.83 7.31 -2.38 -0.02 0.81 16 28 H 0.08 0.95 7.40 -2.38 -0.02 0.93 16 29 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 30 H 0.10 1.18 4.02 -2.39 -0.01 1.17 16 31 H 0.10 2.94 8.07 -2.39 -0.02 2.92 16 32 H 0.06 2.30 7.49 -2.39 -0.02 2.28 16 33 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.37 17.60 5.53 -92.71 -0.51 17.09 16 36 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 37 H 0.06 1.71 7.68 -2.39 -0.02 1.69 16 38 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 39 H 0.11 0.78 7.61 -2.39 -0.02 0.77 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.12 0.80 7.03 -2.39 -0.02 0.79 16 42 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 Total: -1.00 -84.94 334.24 3.06 -81.88 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.43 Total: 20.59 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 6.30 Total: 9.64 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -3.99 Total: -124.69 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.59 Total: -36.42 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.90 Total: 49.00 kcal Total: -84.94 3.06 -81.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691397673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.009 kcal (2) G-P(sol) polarization free energy of solvation -84.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds