Wall clock time and date at job start Mon Mar 30 2020 01:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42890 * 109.47592 * 2 1 4 4 C 1.42906 * 114.00216 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46620 * 329.99733 * 4 3 2 6 6 C 1.52993 * 109.47357 * 89.99866 * 4 3 2 7 7 C 1.50703 * 109.47124 * 209.99935 * 4 3 2 8 8 O 1.21288 * 120.00071 * 355.00274 * 7 4 3 9 9 N 1.34769 * 120.00131 * 174.99336 * 7 4 3 10 10 C 1.46496 * 120.00469 * 179.97438 * 9 7 4 11 11 C 1.53001 * 109.47472 * 180.02562 * 10 9 7 12 12 H 1.08997 * 112.84764 * 43.80993 * 11 10 9 13 13 C 1.53781 * 113.61436 * 174.99891 * 11 10 9 14 14 C 1.53780 * 87.07974 * 140.06933 * 13 11 10 15 15 H 1.08993 * 113.61622 * 89.20153 * 14 13 11 16 16 N 1.46506 * 113.61267 * 220.02272 * 14 13 11 17 17 C 1.36938 * 119.99589 * 204.99970 * 16 14 13 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99408 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00325 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99550 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47349 * 59.99998 * 21 19 17 23 23 H 1.48505 * 109.47077 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47093 * 299.99919 * 21 19 17 25 25 C 1.53775 * 113.69030 * 272.53612 * 11 10 9 26 26 H 1.08997 * 109.47511 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46701 * 300.00000 * 1 2 3 28 28 H 1.09002 * 109.46987 * 59.99760 * 1 2 3 29 29 H 1.08999 * 109.46736 * 239.99377 * 2 1 3 30 30 H 1.09002 * 109.46987 * 120.00240 * 2 1 3 31 31 H 1.08999 * 109.47682 * 179.97438 * 6 4 3 32 32 H 1.09000 * 109.47263 * 300.00836 * 6 4 3 33 33 H 1.09004 * 109.46923 * 59.99688 * 6 4 3 34 34 H 0.97005 * 120.00190 * 0.02562 * 9 7 4 35 35 H 1.08994 * 109.47073 * 60.00421 * 10 9 7 36 36 H 1.09007 * 109.47424 * 300.00573 * 10 9 7 37 37 H 1.09001 * 113.61258 * 25.51836 * 13 11 10 38 38 H 1.09001 * 113.69164 * 254.62625 * 13 11 10 39 39 H 0.96995 * 120.00050 * 24.72178 * 16 14 13 40 40 H 0.97000 * 119.99693 * 180.02562 * 20 19 17 41 41 H 1.09000 * 113.61334 * 105.46367 * 25 11 10 42 42 H 1.08992 * 113.61763 * 334.55719 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4310 1.4599 -0.0006 5 1 3.8636 0.6013 0.5130 6 6 3.9389 1.5003 -1.4432 7 6 3.8350 2.7261 0.7098 8 8 2.9867 3.5045 1.0913 9 7 5.1388 2.9934 0.9214 10 6 5.5316 4.2245 1.6115 11 6 7.0566 4.2839 1.7204 12 1 7.5584 3.9964 0.7965 13 6 7.5805 5.5984 2.3224 14 6 8.6104 4.7475 3.0840 15 1 9.5375 4.5879 2.5336 16 7 8.8360 5.1928 4.4614 17 6 10.0216 4.9117 5.0863 18 1 10.7902 4.3614 4.5639 19 6 10.2356 5.3341 6.3912 20 7 9.2987 6.0043 7.0280 21 14 11.8526 4.9500 7.2439 22 1 12.9714 5.5599 6.4814 23 1 11.8304 5.5057 8.6208 24 1 12.0413 3.4784 7.3076 25 6 7.6148 3.5811 2.9690 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 5.0254 1.5868 -1.4437 32 1 3.6466 0.5846 -1.9571 33 1 3.5061 2.3590 -1.9568 34 1 5.8174 2.3710 0.6161 35 1 5.0951 4.2364 2.6101 36 1 5.1740 5.0867 1.0485 37 1 6.8616 6.0984 2.9715 38 1 8.0260 6.2696 1.5882 39 1 8.1472 5.6902 4.9293 40 1 9.4485 6.2997 7.9397 41 1 8.0880 2.6227 2.7557 42 1 6.9053 3.5296 3.7949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691425610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:59 Heat of formation + Delta-G solvation = -62.553143 kcal Electronic energy + Delta-G solvation = -20366.229877 eV Core-core repulsion = 17154.076300 eV Total energy + Delta-G solvation = -3212.153577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11947 -38.69516 -37.76925 -34.69772 -33.38757 -32.63153 -30.61430 -30.07568 -27.40332 -25.10153 -24.65515 -23.70157 -22.94679 -21.07583 -20.53321 -19.06894 -17.46790 -17.29498 -17.00586 -16.12621 -15.68969 -15.41836 -14.88110 -14.61938 -14.34712 -13.78381 -13.64579 -13.42638 -13.16070 -12.98342 -12.71555 -12.55285 -12.29490 -11.91662 -11.82926 -11.68620 -11.40208 -11.36200 -11.23601 -10.83023 -10.53798 -10.25510 -10.18685 -10.10537 -9.83416 -9.64029 -9.43218 -9.03531 -8.87079 -6.97139 -5.78697 -3.07717 2.55584 2.72182 3.42496 3.46890 3.48198 3.66816 4.44131 4.57637 4.58808 4.65494 4.77015 4.89849 4.96862 4.99215 5.02281 5.12173 5.22370 5.33180 5.41164 5.45997 5.50050 5.58284 5.72968 5.81951 5.82730 5.84815 5.93112 6.08729 6.24604 6.30754 6.35444 6.43843 6.58240 6.79235 6.82411 7.10653 7.44867 7.67641 8.17668 8.39852 9.50725 10.09157 10.43297 11.43610 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035667 B = 0.002750 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.843111 B =10179.191555 C =10373.290654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.071 3.929 5 H 0.086 0.914 6 C -0.169 4.169 7 C 0.510 3.490 8 O -0.522 6.522 9 N -0.723 5.723 10 C 0.133 3.867 11 C -0.127 4.127 12 H 0.088 0.912 13 C -0.143 4.143 14 C 0.166 3.834 15 H 0.075 0.925 16 N -0.713 5.713 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.161 4.161 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.399 0.601 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.053 0.947 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.536 -12.299 -17.985 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.009 3.991 5 H 0.103 0.897 6 C -0.227 4.227 7 C 0.294 3.706 8 O -0.396 6.396 9 N -0.376 5.376 10 C 0.010 3.990 11 C -0.146 4.146 12 H 0.106 0.894 13 C -0.182 4.182 14 C 0.054 3.946 15 H 0.093 0.907 16 N -0.351 5.351 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.202 4.202 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.233 0.767 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.105 -11.584 -17.587 24.290 hybrid contribution 1.139 -0.653 0.522 1.413 sum -10.965 -12.237 -17.065 23.690 Atomic orbital electron populations 1.21730 0.93412 1.02204 1.03474 1.22595 0.96011 0.83570 1.00077 1.88063 1.18380 1.26275 1.94931 1.21889 0.83793 0.96713 0.96704 0.89662 1.22225 1.01699 1.03705 0.95090 1.20358 0.82810 0.87641 0.79760 1.90732 1.50210 1.48780 1.49904 1.45981 1.06738 1.24726 1.60175 1.21452 0.94783 0.85554 0.97207 1.22638 0.92806 1.00253 0.98912 0.89367 1.23451 0.99855 0.95442 0.99481 1.21519 0.94069 0.91966 0.87090 0.90685 1.42412 1.17879 1.65412 1.09369 1.19256 0.93302 1.29530 0.95555 0.91159 1.24777 0.98119 1.00827 0.97204 1.69651 1.33242 1.42766 1.12347 0.86263 0.83321 0.77809 0.78748 1.21231 1.21675 1.21260 1.23951 1.00881 0.99624 0.95749 0.91026 0.91577 0.91773 0.93251 0.93176 0.90850 0.91302 0.91057 0.76666 0.91154 0.91688 0.90086 0.91978 0.78048 0.93374 0.92794 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.44 6.47 37.16 0.24 0.68 16 3 O -0.36 -4.25 9.53 -55.09 -0.52 -4.77 16 4 C 0.07 0.69 3.13 -27.89 -0.09 0.60 16 5 H 0.09 0.63 7.79 -51.93 -0.40 0.23 16 6 C -0.17 -1.21 9.48 37.15 0.35 -0.86 16 7 C 0.51 6.75 7.18 -10.99 -0.08 6.67 16 8 O -0.52 -9.47 16.51 -14.31 -0.24 -9.71 16 9 N -0.72 -8.06 5.52 -60.30 -0.33 -8.40 16 10 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 11 C -0.13 -1.65 3.75 -89.81 -0.34 -1.99 16 12 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 13 C -0.14 -2.25 7.39 -25.92 -0.19 -2.44 16 14 C 0.17 3.16 4.48 -67.11 -0.30 2.86 16 15 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 16 N -0.71 -17.74 5.40 -52.63 -0.28 -18.02 16 17 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C -0.16 -2.61 7.43 -25.92 -0.19 -2.80 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.31 7.87 -51.93 -0.41 -0.10 16 30 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.07 0.40 7.92 -51.93 -0.41 -0.01 16 32 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 3.25 8.26 -40.82 -0.34 2.91 16 35 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.39 10.25 7.92 -40.82 -0.32 9.92 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -33.79 350.37 -8.18 -41.96 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.30 Total: 7.54 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.48 Total: -3.64 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.11 Total: -53.90 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.76 Total: -14.48 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.79 -8.18 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691425610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.588 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds