Wall clock time and date at job start Mon Mar 30 2020 01:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42890 * 109.47592 * 2 1 4 4 C 1.42906 * 114.00216 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46620 * 329.99733 * 4 3 2 6 6 C 1.52993 * 109.47357 * 89.99866 * 4 3 2 7 7 C 1.50703 * 109.47124 * 209.99935 * 4 3 2 8 8 O 1.21288 * 120.00071 * 355.00274 * 7 4 3 9 9 N 1.34769 * 120.00131 * 174.99336 * 7 4 3 10 10 C 1.46496 * 120.00469 * 179.97438 * 9 7 4 11 11 C 1.53001 * 109.47472 * 180.02562 * 10 9 7 12 12 H 1.08997 * 112.84764 * 43.80993 * 11 10 9 13 13 C 1.53781 * 113.61436 * 174.99891 * 11 10 9 14 14 C 1.53780 * 87.07974 * 140.06933 * 13 11 10 15 15 H 1.08993 * 113.61622 * 89.20153 * 14 13 11 16 16 N 1.46506 * 113.61267 * 220.02272 * 14 13 11 17 17 C 1.36938 * 119.99589 * 204.99970 * 16 14 13 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99408 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00325 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99550 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47349 * 59.99998 * 21 19 17 23 23 H 1.48505 * 109.47077 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47093 * 299.99919 * 21 19 17 25 25 C 1.53775 * 113.69030 * 272.53612 * 11 10 9 26 26 H 1.08997 * 109.47511 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46701 * 300.00000 * 1 2 3 28 28 H 1.09002 * 109.46987 * 59.99760 * 1 2 3 29 29 H 1.08999 * 109.46736 * 239.99377 * 2 1 3 30 30 H 1.09002 * 109.46987 * 120.00240 * 2 1 3 31 31 H 1.08999 * 109.47682 * 179.97438 * 6 4 3 32 32 H 1.09000 * 109.47263 * 300.00836 * 6 4 3 33 33 H 1.09004 * 109.46923 * 59.99688 * 6 4 3 34 34 H 0.97005 * 120.00190 * 0.02562 * 9 7 4 35 35 H 1.08994 * 109.47073 * 60.00421 * 10 9 7 36 36 H 1.09007 * 109.47424 * 300.00573 * 10 9 7 37 37 H 1.09001 * 113.61258 * 25.51836 * 13 11 10 38 38 H 1.09001 * 113.69164 * 254.62625 * 13 11 10 39 39 H 0.96995 * 120.00050 * 24.72178 * 16 14 13 40 40 H 0.97000 * 119.99693 * 180.02562 * 20 19 17 41 41 H 1.09000 * 113.61334 * 105.46367 * 25 11 10 42 42 H 1.08992 * 113.61763 * 334.55719 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4310 1.4599 -0.0006 5 1 3.8636 0.6013 0.5130 6 6 3.9389 1.5003 -1.4432 7 6 3.8350 2.7261 0.7098 8 8 2.9867 3.5045 1.0913 9 7 5.1388 2.9934 0.9214 10 6 5.5316 4.2245 1.6115 11 6 7.0566 4.2839 1.7204 12 1 7.5584 3.9964 0.7965 13 6 7.5805 5.5984 2.3224 14 6 8.6104 4.7475 3.0840 15 1 9.5375 4.5879 2.5336 16 7 8.8360 5.1928 4.4614 17 6 10.0216 4.9117 5.0863 18 1 10.7902 4.3614 4.5639 19 6 10.2356 5.3341 6.3912 20 7 9.2987 6.0043 7.0280 21 14 11.8526 4.9500 7.2439 22 1 12.9714 5.5599 6.4814 23 1 11.8304 5.5057 8.6208 24 1 12.0413 3.4784 7.3076 25 6 7.6148 3.5811 2.9690 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 5.0254 1.5868 -1.4437 32 1 3.6466 0.5846 -1.9571 33 1 3.5061 2.3590 -1.9568 34 1 5.8174 2.3710 0.6161 35 1 5.0951 4.2364 2.6101 36 1 5.1740 5.0867 1.0485 37 1 6.8616 6.0984 2.9715 38 1 8.0260 6.2696 1.5882 39 1 8.1472 5.6902 4.9293 40 1 9.4485 6.2997 7.9397 41 1 8.0880 2.6227 2.7557 42 1 6.9053 3.5296 3.7949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691425610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:58 Heat of formation + Delta-G solvation = -86.285391 kcal Electronic energy + Delta-G solvation = -20367.258985 eV Core-core repulsion = 17154.076300 eV Total energy + Delta-G solvation = -3213.182684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13025 -39.93999 -38.68051 -36.06282 -35.07178 -33.38483 -32.15739 -31.07268 -28.63881 -26.44774 -26.01240 -25.04769 -23.59519 -22.44124 -21.56197 -20.45046 -19.05646 -18.34367 -18.07977 -16.98935 -16.80517 -16.53279 -16.31276 -15.87618 -15.63556 -15.13797 -14.99489 -14.52176 -14.22002 -14.00760 -13.42610 -13.37580 -13.22870 -13.19632 -13.01348 -12.92071 -12.85587 -12.61930 -12.29102 -12.24459 -12.08703 -12.02290 -11.57124 -11.53161 -11.10272 -10.94808 -10.79969 -10.44463 -10.10569 -8.97173 -7.93776 -5.22268 1.47556 1.50717 1.55588 1.56806 1.86466 2.57411 2.93485 3.37922 3.62598 3.75284 3.75975 3.91053 3.96289 4.04114 4.19977 4.26725 4.32906 4.36264 4.43346 4.48748 4.55840 4.63217 4.75074 4.82148 4.89601 4.98477 4.99909 5.01610 5.05863 5.21133 5.23607 5.26452 5.35665 5.42812 5.53392 5.74643 6.13060 6.28362 6.57384 7.22877 7.33650 8.12470 8.33924 9.29679 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035667 B = 0.002750 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.843111 B =10179.191555 C =10373.290654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.395 6.395 4 C 0.072 3.928 5 H 0.114 0.886 6 C -0.163 4.163 7 C 0.504 3.496 8 O -0.581 6.581 9 N -0.706 5.706 10 C 0.138 3.862 11 C -0.093 4.093 12 H 0.127 0.873 13 C -0.139 4.139 14 C 0.143 3.857 15 H 0.083 0.917 16 N -0.731 5.731 17 C -0.242 4.242 18 H 0.080 0.920 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.974 3.026 22 H -0.276 1.276 23 H -0.299 1.299 24 H -0.277 1.277 25 C -0.153 4.153 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.418 0.582 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.071 0.929 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.344 -14.517 -20.367 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.315 6.315 4 C 0.011 3.989 5 H 0.132 0.868 6 C -0.221 4.221 7 C 0.290 3.710 8 O -0.460 6.460 9 N -0.360 5.360 10 C 0.014 3.986 11 C -0.112 4.112 12 H 0.144 0.856 13 C -0.178 4.178 14 C 0.033 3.967 15 H 0.101 0.899 16 N -0.368 5.368 17 C -0.374 4.374 18 H 0.098 0.902 19 C -0.273 4.273 20 N -0.624 5.624 21 Si 0.803 3.197 22 H -0.202 1.202 23 H -0.225 1.225 24 H -0.203 1.203 25 C -0.194 4.194 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.256 0.744 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.874 -13.864 -20.051 26.692 hybrid contribution 0.730 0.007 1.190 1.396 sum -10.144 -13.857 -18.861 25.508 Atomic orbital electron populations 1.21777 0.93326 1.03449 1.02355 1.22826 0.96235 0.82275 1.01548 1.88030 1.19616 1.28608 1.95199 1.22034 0.83377 0.95339 0.98161 0.86828 1.22223 1.02903 1.03985 0.92950 1.21159 0.82583 0.88299 0.78933 1.90705 1.51849 1.50981 1.52481 1.45801 1.06869 1.24247 1.59116 1.21226 0.94646 0.86613 0.96103 1.22470 0.92606 0.97216 0.98885 0.85561 1.23343 0.98545 0.96666 0.99272 1.21974 0.95662 0.94256 0.84762 0.89896 1.42652 1.16835 1.65799 1.11557 1.19713 0.94118 1.27917 0.95675 0.90167 1.25622 1.01566 1.01816 0.98319 1.69824 1.35373 1.44918 1.12311 0.85197 0.79571 0.77845 0.77074 1.20190 1.22537 1.20299 1.23723 0.99519 0.99543 0.96604 0.88579 0.93367 0.92225 0.90824 0.92470 0.88577 0.89260 0.92821 0.74399 0.93844 0.91834 0.91772 0.90215 0.79746 0.94134 0.91026 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.05 0.67 6.47 71.98 0.47 1.14 16 3 O -0.40 -9.00 9.53 -129.99 -1.24 -10.24 16 4 C 0.07 1.25 3.13 29.85 0.09 1.35 16 5 H 0.11 1.30 7.79 -2.38 -0.02 1.29 16 6 C -0.16 -1.82 9.48 71.98 0.68 -1.14 16 7 C 0.50 12.84 7.18 87.66 0.63 13.47 16 8 O -0.58 -21.59 16.51 15.93 0.26 -21.33 16 9 N -0.71 -14.21 5.52 -463.07 -2.55 -16.77 16 10 C 0.14 3.46 5.51 86.38 0.48 3.94 16 11 C -0.09 -2.17 3.75 -10.27 -0.04 -2.21 16 12 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 13 C -0.14 -4.19 7.39 31.12 0.23 -3.96 16 14 C 0.14 5.29 4.48 45.52 0.20 5.49 16 15 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 16 N -0.73 -36.75 5.40 -320.43 -1.73 -38.49 16 17 C -0.24 -13.35 9.97 84.03 0.84 -12.51 16 18 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 19 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 20 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 21 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 C -0.15 -4.72 7.43 31.12 0.23 -4.49 16 26 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.68 7.87 -2.39 -0.02 0.66 16 30 H 0.06 0.72 8.09 -2.39 -0.02 0.70 16 31 H 0.10 0.62 7.92 -2.39 -0.02 0.60 16 32 H 0.09 0.66 7.87 -2.39 -0.02 0.64 16 33 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.42 5.18 8.26 -92.70 -0.77 4.41 16 35 H 0.04 1.35 7.85 -2.39 -0.02 1.33 16 36 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.37 20.41 7.92 -92.71 -0.73 19.68 16 40 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.05 1.93 7.90 -2.39 -0.02 1.91 16 Total: -1.00 -76.48 350.37 1.57 -74.91 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: -0.50 Total: 28.50 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 5.02 Total: -4.46 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -4.00 Total: -115.45 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.98 Total: -31.57 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -76.48 1.57 -74.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691425610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.376 kcal (2) G-P(sol) polarization free energy of solvation -76.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds