Wall clock time and date at job start Mon Mar 30 2020 01:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47388 * 2 1 4 4 C 1.42899 * 114.00042 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46860 * 29.99895 * 4 3 2 6 6 C 1.53003 * 109.46936 * 269.99981 * 4 3 2 7 7 C 1.50697 * 109.46919 * 150.00328 * 4 3 2 8 8 O 1.21283 * 120.00247 * 4.99998 * 7 4 3 9 9 N 1.34777 * 119.99981 * 185.00368 * 7 4 3 10 10 C 1.46493 * 120.00318 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.47590 * 179.97438 * 10 9 7 12 12 H 1.09005 * 112.84870 * 316.20258 * 11 10 9 13 13 C 1.53958 * 113.74193 * 87.39739 * 11 10 9 14 14 C 1.53781 * 87.02034 * 139.94695 * 13 11 10 15 15 H 1.09003 * 113.61454 * 89.22905 * 14 13 11 16 16 N 1.46496 * 113.61833 * 220.05435 * 14 13 11 17 17 C 1.36945 * 119.99718 * 254.13659 * 16 14 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.53780 * 113.61994 * 184.99916 * 11 10 9 26 26 H 1.09000 * 109.47573 * 59.99229 * 1 2 3 27 27 H 1.08995 * 109.47459 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46913 * 299.99858 * 1 2 3 29 29 H 1.08998 * 109.46507 * 240.00351 * 2 1 3 30 30 H 1.09003 * 109.46926 * 120.00441 * 2 1 3 31 31 H 1.09000 * 109.46732 * 179.97438 * 6 4 3 32 32 H 1.08994 * 109.47132 * 300.00050 * 6 4 3 33 33 H 1.09002 * 109.46933 * 60.00357 * 6 4 3 34 34 H 0.97001 * 120.00130 * 359.97438 * 9 7 4 35 35 H 1.09005 * 109.47156 * 59.99850 * 10 9 7 36 36 H 1.08996 * 109.47274 * 300.00011 * 10 9 7 37 37 H 1.09001 * 113.61085 * 25.42977 * 13 11 10 38 38 H 1.08996 * 113.67079 * 254.47444 * 13 11 10 39 39 H 0.96996 * 120.00499 * 74.13389 * 16 14 13 40 40 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 41 41 H 1.08995 * 113.61248 * 105.38508 * 25 11 10 42 42 H 1.08999 * 113.60760 * 334.48594 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8631 0.6015 -0.5147 6 6 3.9399 1.5000 1.4418 7 6 3.8342 2.7264 -0.7109 8 8 2.9856 3.5049 -1.0914 9 7 5.1380 2.9939 -0.9235 10 6 5.5301 4.2247 -1.6145 11 6 7.0550 4.2844 -1.7243 12 1 7.5575 3.9972 -0.8006 13 6 7.6145 3.5791 -2.9733 14 6 8.6078 4.7473 -3.0894 15 1 9.5353 4.5882 -2.5394 16 7 8.8324 5.1920 -4.4671 17 6 10.0051 4.8837 -5.1034 18 1 10.7645 4.3131 -4.5895 19 6 10.2178 5.3045 -6.4089 20 7 9.2924 6.0004 -7.0351 21 14 11.8178 4.8846 -7.2768 22 1 12.8113 5.9606 -7.0312 23 1 12.3421 3.5978 -6.7529 24 1 11.5719 4.7616 -8.7361 25 6 7.5783 5.5986 -2.3275 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.0266 1.5856 1.4413 32 1 3.5077 2.3585 1.9559 33 1 3.6482 0.5840 1.9555 34 1 5.8167 2.3714 -0.6189 35 1 5.1727 5.0870 -1.0516 36 1 5.0928 4.2359 -2.6128 37 1 6.9050 3.5255 -3.7990 38 1 8.0896 2.6217 -2.7592 39 1 8.1505 5.7047 -4.9285 40 1 9.4412 6.2948 -7.9473 41 1 8.0241 6.2691 -1.5928 42 1 6.8588 6.0980 -2.9763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691425617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:00 Heat of formation + Delta-G solvation = -62.707123 kcal Electronic energy + Delta-G solvation = -20368.161366 eV Core-core repulsion = 17156.001112 eV Total energy + Delta-G solvation = -3212.160254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.11915 -38.68722 -37.76809 -34.69877 -33.38626 -32.63135 -30.61417 -30.07440 -27.40364 -25.10808 -24.65647 -23.70337 -22.94717 -21.07623 -20.53246 -19.06343 -17.46754 -17.29559 -17.00823 -16.12680 -15.69073 -15.41866 -14.88353 -14.62156 -14.34688 -13.78389 -13.64212 -13.42561 -13.15856 -12.99630 -12.71890 -12.55280 -12.29634 -11.92234 -11.83009 -11.68527 -11.39505 -11.35786 -11.23826 -10.84995 -10.52979 -10.25880 -10.16771 -10.10768 -9.82735 -9.64086 -9.43554 -9.03638 -8.87523 -6.97012 -5.78909 -3.07925 2.55545 2.72156 3.41957 3.46944 3.48940 3.66808 4.44122 4.57504 4.58766 4.65478 4.76999 4.89796 4.96402 4.99167 5.02260 5.12189 5.22092 5.33161 5.41159 5.45995 5.49652 5.58271 5.72947 5.81675 5.82711 5.84615 5.92953 6.08546 6.24528 6.30312 6.35321 6.43854 6.58085 6.79166 6.82225 7.10740 7.44825 7.68118 8.17625 8.39692 9.50629 10.09075 10.43138 11.43475 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035223 B = 0.002757 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.734953 B =10151.982066 C =10351.679759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.071 3.929 5 H 0.086 0.914 6 C -0.169 4.169 7 C 0.510 3.490 8 O -0.521 6.521 9 N -0.723 5.723 10 C 0.133 3.867 11 C -0.127 4.127 12 H 0.088 0.912 13 C -0.161 4.161 14 C 0.166 3.834 15 H 0.074 0.926 16 N -0.713 5.713 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.282 1.282 24 H -0.291 1.291 25 C -0.142 4.142 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.399 0.601 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.062 0.938 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.528 -12.296 18.036 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.009 3.991 5 H 0.103 0.897 6 C -0.227 4.227 7 C 0.294 3.706 8 O -0.396 6.396 9 N -0.376 5.376 10 C 0.010 3.990 11 C -0.146 4.146 12 H 0.106 0.894 13 C -0.202 4.202 14 C 0.053 3.947 15 H 0.092 0.908 16 N -0.351 5.351 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.208 1.208 24 H -0.218 1.218 25 C -0.181 4.181 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.233 0.767 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.098 -11.593 17.646 24.334 hybrid contribution 1.131 -0.659 -0.538 1.415 sum -10.967 -12.252 17.108 23.729 Atomic orbital electron populations 1.21729 0.93412 1.02204 1.03475 1.22597 0.96011 0.83567 1.00077 1.88064 1.18381 1.26276 1.94931 1.21889 0.83795 0.96711 0.96708 0.89661 1.22226 1.01691 1.03704 0.95096 1.20357 0.82809 0.87644 0.79754 1.90731 1.50179 1.48778 1.49932 1.45981 1.06746 1.24736 1.60163 1.21449 0.94783 0.85567 0.97192 1.22674 0.92809 1.00224 0.98917 0.89375 1.23983 1.00876 0.99615 0.95739 1.21518 0.94071 0.91973 0.87089 0.90765 1.42418 1.19319 1.64118 1.09276 1.19294 0.94371 1.28449 0.95408 0.91112 1.24777 0.98220 1.00739 0.97235 1.69664 1.33739 1.42019 1.12579 0.86188 0.83137 0.77884 0.78958 1.21686 1.20758 1.21760 1.23426 0.99814 0.95439 0.99451 0.91577 0.91026 0.91774 0.93174 0.93248 0.90853 0.91050 0.91308 0.76667 0.91682 0.91154 0.90333 0.92784 0.78052 0.93433 0.91955 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.44 6.47 37.16 0.24 0.68 16 3 O -0.36 -4.25 9.53 -55.09 -0.52 -4.77 16 4 C 0.07 0.69 3.13 -27.88 -0.09 0.60 16 5 H 0.09 0.64 7.79 -51.93 -0.40 0.23 16 6 C -0.17 -1.21 9.48 37.16 0.35 -0.86 16 7 C 0.51 6.75 7.18 -10.99 -0.08 6.67 16 8 O -0.52 -9.47 16.51 -14.31 -0.24 -9.70 16 9 N -0.72 -8.06 5.52 -60.30 -0.33 -8.40 16 10 C 0.13 1.75 5.51 -4.05 -0.02 1.73 16 11 C -0.13 -1.65 3.75 -89.71 -0.34 -1.99 16 12 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 13 C -0.16 -2.61 7.45 -25.83 -0.19 -2.81 16 14 C 0.17 3.16 4.47 -67.12 -0.30 2.86 16 15 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 16 N -0.71 -17.74 5.41 -52.64 -0.28 -18.03 16 17 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 21 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C -0.14 -2.23 7.39 -25.92 -0.19 -2.42 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.05 0.31 7.87 -51.93 -0.41 -0.10 16 31 H 0.07 0.40 7.92 -51.93 -0.41 -0.02 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 34 H 0.40 3.25 8.26 -40.82 -0.34 2.92 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.07 7.86 -51.93 -0.41 0.66 16 37 H 0.08 1.42 7.91 -51.93 -0.41 1.01 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.39 10.24 7.91 -40.82 -0.32 9.92 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.35 8.07 -51.93 -0.42 0.94 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -33.82 350.39 -8.18 -41.99 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.30 Total: 7.48 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.48 Total: -3.61 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.11 Total: -53.91 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.76 Total: -14.48 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.82 -8.18 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691425617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.714 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds