Wall clock time and date at job start Mon Mar 30 2020 01:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47388 * 2 1 4 4 C 1.42899 * 114.00042 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46860 * 29.99895 * 4 3 2 6 6 C 1.53003 * 109.46936 * 269.99981 * 4 3 2 7 7 C 1.50697 * 109.46919 * 150.00328 * 4 3 2 8 8 O 1.21283 * 120.00247 * 4.99998 * 7 4 3 9 9 N 1.34777 * 119.99981 * 185.00368 * 7 4 3 10 10 C 1.46493 * 120.00318 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.47590 * 179.97438 * 10 9 7 12 12 H 1.09005 * 112.84870 * 316.20258 * 11 10 9 13 13 C 1.53958 * 113.74193 * 87.39739 * 11 10 9 14 14 C 1.53781 * 87.02034 * 139.94695 * 13 11 10 15 15 H 1.09003 * 113.61454 * 89.22905 * 14 13 11 16 16 N 1.46496 * 113.61833 * 220.05435 * 14 13 11 17 17 C 1.36945 * 119.99718 * 254.13659 * 16 14 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.53780 * 113.61994 * 184.99916 * 11 10 9 26 26 H 1.09000 * 109.47573 * 59.99229 * 1 2 3 27 27 H 1.08995 * 109.47459 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46913 * 299.99858 * 1 2 3 29 29 H 1.08998 * 109.46507 * 240.00351 * 2 1 3 30 30 H 1.09003 * 109.46926 * 120.00441 * 2 1 3 31 31 H 1.09000 * 109.46732 * 179.97438 * 6 4 3 32 32 H 1.08994 * 109.47132 * 300.00050 * 6 4 3 33 33 H 1.09002 * 109.46933 * 60.00357 * 6 4 3 34 34 H 0.97001 * 120.00130 * 359.97438 * 9 7 4 35 35 H 1.09005 * 109.47156 * 59.99850 * 10 9 7 36 36 H 1.08996 * 109.47274 * 300.00011 * 10 9 7 37 37 H 1.09001 * 113.61085 * 25.42977 * 13 11 10 38 38 H 1.08996 * 113.67079 * 254.47444 * 13 11 10 39 39 H 0.96996 * 120.00499 * 74.13389 * 16 14 13 40 40 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 41 41 H 1.08995 * 113.61248 * 105.38508 * 25 11 10 42 42 H 1.08999 * 113.60760 * 334.48594 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8631 0.6015 -0.5147 6 6 3.9399 1.5000 1.4418 7 6 3.8342 2.7264 -0.7109 8 8 2.9856 3.5049 -1.0914 9 7 5.1380 2.9939 -0.9235 10 6 5.5301 4.2247 -1.6145 11 6 7.0550 4.2844 -1.7243 12 1 7.5575 3.9972 -0.8006 13 6 7.6145 3.5791 -2.9733 14 6 8.6078 4.7473 -3.0894 15 1 9.5353 4.5882 -2.5394 16 7 8.8324 5.1920 -4.4671 17 6 10.0051 4.8837 -5.1034 18 1 10.7645 4.3131 -4.5895 19 6 10.2178 5.3045 -6.4089 20 7 9.2924 6.0004 -7.0351 21 14 11.8178 4.8846 -7.2768 22 1 12.8113 5.9606 -7.0312 23 1 12.3421 3.5978 -6.7529 24 1 11.5719 4.7616 -8.7361 25 6 7.5783 5.5986 -2.3275 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.0266 1.5856 1.4413 32 1 3.5077 2.3585 1.9559 33 1 3.6482 0.5840 1.9555 34 1 5.8167 2.3714 -0.6189 35 1 5.1727 5.0870 -1.0516 36 1 5.0928 4.2359 -2.6128 37 1 6.9050 3.5255 -3.7990 38 1 8.0896 2.6217 -2.7592 39 1 8.1505 5.7047 -4.9285 40 1 9.4412 6.2948 -7.9473 41 1 8.0241 6.2691 -1.5928 42 1 6.8588 6.0980 -2.9763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691425617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:00 Heat of formation + Delta-G solvation = -86.466464 kcal Electronic energy + Delta-G solvation = -20369.191648 eV Core-core repulsion = 17156.001112 eV Total energy + Delta-G solvation = -3213.190536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12883 -39.93124 -38.68005 -36.06341 -35.07067 -33.38460 -32.15586 -31.07250 -28.63877 -26.45457 -26.01414 -25.04825 -23.59536 -22.44057 -21.56058 -20.44346 -19.06090 -18.34349 -18.08022 -16.99068 -16.80638 -16.53290 -16.31279 -15.87778 -15.63394 -15.13764 -14.99702 -14.53167 -14.22099 -14.00685 -13.42979 -13.37531 -13.23042 -13.19656 -13.00887 -12.92706 -12.85792 -12.65441 -12.28944 -12.18741 -12.07991 -12.02381 -11.57660 -11.53923 -11.09687 -10.94975 -10.81039 -10.44494 -10.10546 -8.97158 -7.94055 -5.22519 1.47523 1.49386 1.55578 1.57694 1.86480 2.57157 2.93505 3.37908 3.62530 3.74804 3.76025 3.90978 3.96206 4.04115 4.19980 4.26743 4.32885 4.35858 4.43184 4.48736 4.55874 4.63273 4.75079 4.82126 4.89615 4.98348 4.99832 5.01604 5.05896 5.21126 5.23542 5.26474 5.35647 5.42826 5.53503 5.74743 6.13037 6.28346 6.57370 7.22863 7.33563 8.12373 8.33681 9.29621 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035223 B = 0.002757 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.734953 B =10151.982066 C =10351.679759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.395 6.395 4 C 0.072 3.928 5 H 0.114 0.886 6 C -0.163 4.163 7 C 0.504 3.496 8 O -0.581 6.581 9 N -0.707 5.707 10 C 0.138 3.862 11 C -0.093 4.093 12 H 0.126 0.874 13 C -0.153 4.153 14 C 0.143 3.857 15 H 0.082 0.918 16 N -0.731 5.731 17 C -0.240 4.240 18 H 0.081 0.919 19 C -0.082 4.082 20 N -0.974 5.974 21 Si 0.974 3.026 22 H -0.287 1.287 23 H -0.267 1.267 24 H -0.299 1.299 25 C -0.138 4.138 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.418 0.582 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.080 0.920 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.352 -14.542 20.423 27.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.315 6.315 4 C 0.011 3.989 5 H 0.132 0.868 6 C -0.221 4.221 7 C 0.290 3.710 8 O -0.460 6.460 9 N -0.360 5.360 10 C 0.014 3.986 11 C -0.112 4.112 12 H 0.144 0.856 13 C -0.194 4.194 14 C 0.033 3.967 15 H 0.100 0.900 16 N -0.369 5.369 17 C -0.372 4.372 18 H 0.098 0.902 19 C -0.274 4.274 20 N -0.625 5.625 21 Si 0.803 3.197 22 H -0.214 1.214 23 H -0.191 1.191 24 H -0.226 1.226 25 C -0.177 4.177 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.256 0.744 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.883 -13.902 20.114 26.764 hybrid contribution 0.728 0.013 -1.207 1.409 sum -10.156 -13.889 18.907 25.564 Atomic orbital electron populations 1.21776 0.93327 1.03449 1.02356 1.22828 0.96234 0.82272 1.01548 1.88030 1.19616 1.28608 1.95198 1.22035 0.83379 0.95336 0.98167 0.86831 1.22224 1.02895 1.03985 0.92956 1.21158 0.82581 0.88302 0.78928 1.90703 1.51818 1.50977 1.52507 1.45801 1.06877 1.24260 1.59103 1.21224 0.94647 0.86626 0.96089 1.22504 0.92608 0.97199 0.98880 0.85570 1.23755 0.99525 0.99528 0.96601 1.21973 0.95662 0.94274 0.84754 0.89972 1.42658 1.18303 1.64464 1.11458 1.19741 0.95096 1.26873 0.95521 0.90160 1.25619 1.01602 1.01756 0.98393 1.69833 1.35888 1.44164 1.12567 0.85129 0.79290 0.78137 0.77158 1.21435 1.19126 1.22564 1.23322 0.98502 0.96659 0.99246 0.93367 0.88580 0.92226 0.92468 0.90821 0.88580 0.92812 0.89267 0.74403 0.91818 0.93849 0.92870 0.91028 0.79744 0.94148 0.90162 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.05 0.67 6.47 71.98 0.47 1.14 16 3 O -0.40 -9.00 9.53 -129.99 -1.24 -10.24 16 4 C 0.07 1.25 3.13 29.85 0.09 1.35 16 5 H 0.11 1.30 7.79 -2.39 -0.02 1.29 16 6 C -0.16 -1.82 9.48 71.98 0.68 -1.14 16 7 C 0.50 12.84 7.18 87.66 0.63 13.47 16 8 O -0.58 -21.58 16.51 15.95 0.26 -21.32 16 9 N -0.71 -14.21 5.52 -463.07 -2.55 -16.77 16 10 C 0.14 3.46 5.51 86.38 0.48 3.94 16 11 C -0.09 -2.17 3.75 -10.21 -0.04 -2.21 16 12 H 0.13 2.12 8.14 -2.38 -0.02 2.11 16 13 C -0.15 -4.72 7.45 31.18 0.23 -4.49 16 14 C 0.14 5.28 4.47 45.52 0.20 5.48 16 15 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 16 N -0.73 -36.74 5.41 -320.45 -1.73 -38.47 16 17 C -0.24 -13.24 9.97 84.03 0.84 -12.40 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 19 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 20 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16 21 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 25 C -0.14 -4.15 7.39 31.12 0.23 -3.92 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.72 8.08 -2.39 -0.02 0.70 16 30 H 0.07 0.68 7.87 -2.39 -0.02 0.66 16 31 H 0.10 0.62 7.92 -2.39 -0.02 0.60 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.66 7.87 -2.39 -0.02 0.64 16 34 H 0.42 5.18 8.26 -92.71 -0.77 4.41 16 35 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.04 1.34 7.86 -2.39 -0.02 1.33 16 37 H 0.05 1.93 7.91 -2.39 -0.02 1.91 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.37 20.40 7.91 -92.71 -0.73 19.66 16 40 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.06 2.17 8.07 -2.39 -0.02 2.15 16 Total: -1.00 -76.53 350.39 1.57 -74.96 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.50 Total: 28.31 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 5.02 Total: -4.36 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -4.01 Total: -115.45 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.97 Total: -31.55 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.53 1.57 -74.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691425617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.503 kcal (2) G-P(sol) polarization free energy of solvation -76.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds