Wall clock time and date at job start Mon Mar 30 2020 01:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42893 * 109.47383 * 2 1 4 4 C 1.42904 * 114.00292 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47519 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47004 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00472 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99538 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 H 1.08996 * 112.84823 * 316.19572 * 10 9 8 12 12 C 1.53787 * 113.61355 * 87.50373 * 10 9 8 13 13 C 1.53783 * 87.08023 * 139.98452 * 12 10 9 14 14 H 1.08996 * 113.60854 * 220.01945 * 13 12 10 15 15 N 1.46499 * 113.69319 * 89.12338 * 13 12 10 16 16 C 1.36937 * 119.99718 * 107.46331 * 15 13 12 17 17 H 1.07998 * 119.99866 * 0.02562 * 16 15 13 18 18 C 1.38812 * 119.99947 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99865 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99857 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.46951 * 90.00123 * 20 18 16 22 22 H 1.48500 * 109.46991 * 209.99875 * 20 18 16 23 23 H 1.48501 * 109.47171 * 329.99956 * 20 18 16 24 24 C 1.53782 * 113.61417 * 185.00090 * 10 9 8 25 25 H 1.09004 * 109.47256 * 300.00027 * 1 2 3 26 26 H 1.09009 * 109.46875 * 59.99771 * 1 2 3 27 27 H 1.08996 * 109.47433 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46802 * 239.99692 * 2 1 3 29 29 H 1.09001 * 109.47025 * 120.00511 * 2 1 3 30 30 H 1.09000 * 109.47055 * 59.99367 * 4 3 2 31 31 H 1.09007 * 109.46875 * 300.00378 * 4 3 2 32 32 H 1.09003 * 109.46690 * 59.99935 * 5 4 3 33 33 H 1.08993 * 109.46773 * 300.00271 * 5 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 35 35 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 36 36 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 37 37 H 1.08998 * 113.61128 * 254.53330 * 12 10 9 38 38 H 1.08998 * 113.61325 * 25.42994 * 12 10 9 39 39 H 0.96994 * 120.00320 * 287.46778 * 15 13 12 40 40 H 0.96991 * 119.99509 * 180.02562 * 19 18 16 41 41 H 1.09001 * 113.61616 * 334.56263 * 24 10 9 42 42 H 1.09000 * 113.61435 * 105.38746 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 5.3278 3.0571 0.0001 7 8 6.0153 2.0579 -0.0008 8 7 5.9074 4.2739 0.0002 9 6 7.3678 4.3895 0.0063 10 6 7.7624 5.8677 0.0120 11 1 7.1739 6.4656 -0.6839 12 6 7.8565 6.4748 1.4219 13 6 9.1044 7.2266 0.9295 14 1 9.9066 7.2704 1.6661 15 7 8.8083 8.5312 0.3325 16 6 9.1229 9.6803 1.0075 17 1 9.5898 9.6248 1.9798 18 6 8.8419 10.9165 0.4421 19 7 9.1448 12.0211 1.0907 20 14 8.0338 11.0125 -1.2393 21 1 6.5576 11.0282 -1.0788 22 1 8.4700 12.2537 -1.9281 23 1 8.4313 9.8319 -2.0477 24 6 9.2780 6.1012 -0.1042 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8333 0.9765 -0.8908 31 1 3.8341 0.9763 0.8892 32 1 3.4231 3.4212 0.8906 33 1 3.4223 3.4223 -0.8893 34 1 5.3577 5.0731 0.0006 35 1 7.7672 3.9034 0.8965 36 1 7.7741 3.9085 -0.8835 37 1 7.0221 7.1301 1.6716 38 1 8.0673 5.7411 2.1999 39 1 8.3893 8.5811 -0.5409 40 1 8.9481 12.8848 0.6958 41 1 9.8775 5.2655 0.2568 42 1 9.5914 6.4537 -1.0869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691770829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:05 Heat of formation + Delta-G solvation = -63.670947 kcal Electronic energy + Delta-G solvation = -20049.274754 eV Core-core repulsion = 16837.072705 eV Total energy + Delta-G solvation = -3212.202049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.03158 -38.79110 -38.14394 -34.81638 -33.29862 -32.79709 -30.89565 -30.43727 -27.62479 -25.21659 -24.16110 -23.17791 -23.09841 -21.73089 -20.47836 -18.63480 -17.70956 -17.57769 -16.77411 -16.26189 -16.17080 -15.61096 -15.03538 -14.58187 -14.52448 -14.21172 -13.89488 -13.53786 -13.43730 -12.87204 -12.72371 -12.59246 -12.32091 -12.11371 -12.05184 -11.59582 -11.42376 -11.39845 -11.38007 -10.95374 -10.55511 -10.38061 -10.16674 -9.94403 -9.92238 -9.69140 -9.55662 -9.12150 -8.94910 -7.34153 -5.83085 -3.19489 2.47951 2.81415 3.31983 3.34234 3.40578 3.59757 4.49581 4.52662 4.66088 4.72455 4.74110 4.87006 4.90090 4.94066 5.01722 5.06517 5.19452 5.33040 5.35110 5.40742 5.46122 5.48040 5.49090 5.56373 5.71515 5.73825 5.82039 5.88223 6.08813 6.19955 6.28702 6.45178 6.58513 6.70061 6.84398 6.85264 7.36925 7.94707 8.06414 8.36622 9.14220 9.86395 10.05539 11.34988 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028796 B = 0.002773 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.116944 B =10096.451150 C =10658.171589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.394 6.394 4 C 0.079 3.921 5 C -0.141 4.141 6 C 0.515 3.485 7 O -0.549 6.549 8 N -0.723 5.723 9 C 0.130 3.870 10 C -0.124 4.124 11 H 0.090 0.910 12 C -0.166 4.166 13 C 0.172 3.828 14 H 0.071 0.929 15 N -0.730 5.730 16 C -0.247 4.247 17 H 0.092 0.908 18 C 0.005 3.995 19 N -0.931 5.931 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.149 4.149 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.404 0.596 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.081 0.919 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 -22.134 -3.181 25.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.002 3.998 5 C -0.181 4.181 6 C 0.302 3.698 7 O -0.427 6.427 8 N -0.374 5.374 9 C 0.007 3.993 10 C -0.142 4.142 11 H 0.108 0.892 12 C -0.207 4.207 13 C 0.061 3.939 14 H 0.089 0.911 15 N -0.370 5.370 16 C -0.377 4.377 17 H 0.110 0.890 18 C -0.191 4.191 19 N -0.579 5.579 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.188 4.188 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.238 0.762 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.706 -22.468 -3.017 25.988 hybrid contribution -0.740 0.409 -1.236 1.497 sum -13.446 -22.059 -4.252 26.182 Atomic orbital electron populations 1.21753 0.93680 1.02270 1.03185 1.22448 0.95515 0.83566 1.00273 1.87810 1.21173 1.26775 1.95581 1.22096 0.80613 0.95399 1.01701 1.21479 0.92619 0.98199 1.05817 1.20381 0.90025 0.83434 0.76003 1.90707 1.65453 1.36487 1.50025 1.46059 1.08518 1.08071 1.74799 1.21485 0.78938 0.96934 1.01915 1.22760 0.98135 0.93452 0.99897 0.89210 1.23860 1.02550 0.99870 0.94446 1.21002 0.94770 0.84308 0.93856 0.91075 1.42509 1.73285 1.01107 1.20079 1.19113 1.33931 0.82873 1.01785 0.89020 1.24691 1.01050 0.95243 0.98098 1.69698 1.52828 0.96909 1.38433 0.86556 0.79598 0.77037 0.85370 1.21042 1.21635 1.20338 1.23466 0.94071 1.00007 1.01301 0.91795 0.91831 0.91080 0.93324 0.93290 0.92467 0.92424 0.87907 0.88000 0.76192 0.91356 0.91763 0.91278 0.90924 0.80522 0.92964 0.90005 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.39 -3.92 10.34 -35.23 -0.36 -4.28 16 4 C 0.08 0.77 5.23 37.16 0.19 0.96 16 5 C -0.14 -1.25 6.07 -27.88 -0.17 -1.42 16 6 C 0.52 6.03 7.83 -10.99 -0.09 5.95 16 7 O -0.55 -8.40 15.98 5.55 0.09 -8.31 16 8 N -0.72 -7.85 5.56 -60.29 -0.33 -8.19 16 9 C 0.13 1.58 5.51 -4.04 -0.02 1.56 16 10 C -0.12 -1.65 3.63 -89.80 -0.33 -1.98 16 11 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 12 C -0.17 -2.54 7.43 -25.91 -0.19 -2.73 16 13 C 0.17 3.14 4.56 -67.11 -0.31 2.83 16 14 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 15 N -0.73 -16.58 5.12 -52.63 -0.27 -16.85 16 16 C -0.25 -6.81 10.45 -15.06 -0.16 -6.97 16 17 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -28.81 13.97 55.49 0.78 -28.04 16 20 Si 0.88 21.56 27.74 -169.99 -4.71 16.84 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 24 C -0.15 -2.17 7.39 -25.91 -0.19 -2.36 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.40 3.62 8.47 -40.82 -0.35 3.28 16 35 H 0.07 0.87 7.84 -51.92 -0.41 0.46 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 39 H 0.36 8.05 5.76 -40.82 -0.24 7.81 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -32.61 348.28 -7.62 -40.23 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.32 Total: 7.29 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.72 Total: -3.95 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.17 Total: -53.07 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.28 Total: -12.59 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.61 -7.62 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691770829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.444 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds