Wall clock time and date at job start Mon Mar 30 2020 01:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42893 * 109.47383 * 2 1 4 4 C 1.42904 * 114.00292 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47519 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47004 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00472 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99538 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 H 1.08996 * 112.84823 * 316.19572 * 10 9 8 12 12 C 1.53787 * 113.61355 * 87.50373 * 10 9 8 13 13 C 1.53783 * 87.08023 * 139.98452 * 12 10 9 14 14 H 1.08996 * 113.60854 * 220.01945 * 13 12 10 15 15 N 1.46499 * 113.69319 * 89.12338 * 13 12 10 16 16 C 1.36937 * 119.99718 * 107.46331 * 15 13 12 17 17 H 1.07998 * 119.99866 * 0.02562 * 16 15 13 18 18 C 1.38812 * 119.99947 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99865 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99857 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.46951 * 90.00123 * 20 18 16 22 22 H 1.48500 * 109.46991 * 209.99875 * 20 18 16 23 23 H 1.48501 * 109.47171 * 329.99956 * 20 18 16 24 24 C 1.53782 * 113.61417 * 185.00090 * 10 9 8 25 25 H 1.09004 * 109.47256 * 300.00027 * 1 2 3 26 26 H 1.09009 * 109.46875 * 59.99771 * 1 2 3 27 27 H 1.08996 * 109.47433 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46802 * 239.99692 * 2 1 3 29 29 H 1.09001 * 109.47025 * 120.00511 * 2 1 3 30 30 H 1.09000 * 109.47055 * 59.99367 * 4 3 2 31 31 H 1.09007 * 109.46875 * 300.00378 * 4 3 2 32 32 H 1.09003 * 109.46690 * 59.99935 * 5 4 3 33 33 H 1.08993 * 109.46773 * 300.00271 * 5 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 35 35 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 36 36 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 37 37 H 1.08998 * 113.61128 * 254.53330 * 12 10 9 38 38 H 1.08998 * 113.61325 * 25.42994 * 12 10 9 39 39 H 0.96994 * 120.00320 * 287.46778 * 15 13 12 40 40 H 0.96991 * 119.99509 * 180.02562 * 19 18 16 41 41 H 1.09001 * 113.61616 * 334.56263 * 24 10 9 42 42 H 1.09000 * 113.61435 * 105.38746 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 5.3278 3.0571 0.0001 7 8 6.0153 2.0579 -0.0008 8 7 5.9074 4.2739 0.0002 9 6 7.3678 4.3895 0.0063 10 6 7.7624 5.8677 0.0120 11 1 7.1739 6.4656 -0.6839 12 6 7.8565 6.4748 1.4219 13 6 9.1044 7.2266 0.9295 14 1 9.9066 7.2704 1.6661 15 7 8.8083 8.5312 0.3325 16 6 9.1229 9.6803 1.0075 17 1 9.5898 9.6248 1.9798 18 6 8.8419 10.9165 0.4421 19 7 9.1448 12.0211 1.0907 20 14 8.0338 11.0125 -1.2393 21 1 6.5576 11.0282 -1.0788 22 1 8.4700 12.2537 -1.9281 23 1 8.4313 9.8319 -2.0477 24 6 9.2780 6.1012 -0.1042 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8333 0.9765 -0.8908 31 1 3.8341 0.9763 0.8892 32 1 3.4231 3.4212 0.8906 33 1 3.4223 3.4223 -0.8893 34 1 5.3577 5.0731 0.0006 35 1 7.7672 3.9034 0.8965 36 1 7.7741 3.9085 -0.8835 37 1 7.0221 7.1301 1.6716 38 1 8.0673 5.7411 2.1999 39 1 8.3893 8.5811 -0.5409 40 1 8.9481 12.8848 0.6958 41 1 9.8775 5.2655 0.2568 42 1 9.5914 6.4537 -1.0869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691770829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:05 Heat of formation + Delta-G solvation = -86.990699 kcal Electronic energy + Delta-G solvation = -20050.285974 eV Core-core repulsion = 16837.072705 eV Total energy + Delta-G solvation = -3213.213269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01193 -40.00307 -38.88994 -36.08614 -34.96810 -33.51866 -32.64113 -31.27373 -28.78907 -26.45552 -25.60014 -24.46947 -23.68603 -22.98963 -21.41187 -20.09788 -19.55778 -18.41545 -17.48508 -17.25760 -17.01050 -16.59421 -16.46234 -16.08821 -15.37081 -15.23851 -15.18912 -14.70037 -14.63137 -14.40678 -14.03605 -13.37080 -13.21667 -13.13869 -13.03762 -12.93679 -12.71432 -12.63907 -12.24266 -12.04208 -12.01830 -11.89040 -11.64758 -11.52016 -11.09787 -10.91875 -10.78235 -10.61387 -10.06870 -9.29401 -8.02482 -5.36243 1.37956 1.41915 1.49334 1.58793 2.01077 2.48475 2.87820 3.27929 3.51666 3.70274 3.74809 3.83231 4.01663 4.02545 4.12216 4.16854 4.28132 4.37235 4.39077 4.47635 4.50321 4.70526 4.73611 4.79575 4.82296 4.91714 4.93480 4.98095 5.03509 5.09176 5.26768 5.27728 5.33134 5.50163 5.55456 5.81075 6.18259 6.22882 6.52312 7.08107 7.19878 7.84939 8.03645 9.18994 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028796 B = 0.002773 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.116944 B =10096.451150 C =10658.171589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.406 6.406 4 C 0.080 3.920 5 C -0.133 4.133 6 C 0.516 3.484 7 O -0.588 6.588 8 N -0.717 5.717 9 C 0.138 3.862 10 C -0.104 4.104 11 H 0.092 0.908 12 C -0.154 4.154 13 C 0.144 3.856 14 H 0.056 0.944 15 N -0.733 5.733 16 C -0.232 4.232 17 H 0.056 0.944 18 C -0.067 4.067 19 N -0.985 5.985 20 Si 0.957 3.043 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.250 1.250 24 C -0.134 4.134 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.415 0.585 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.367 0.633 40 H 0.258 0.742 41 H 0.105 0.895 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.718 -23.967 -4.692 28.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.326 6.326 4 C 0.003 3.997 5 C -0.173 4.173 6 C 0.304 3.696 7 O -0.469 6.469 8 N -0.368 5.368 9 C 0.014 3.986 10 C -0.123 4.123 11 H 0.110 0.890 12 C -0.194 4.194 13 C 0.034 3.966 14 H 0.074 0.926 15 N -0.375 5.375 16 C -0.363 4.363 17 H 0.074 0.926 18 C -0.258 4.258 19 N -0.635 5.635 20 Si 0.784 3.216 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.175 1.175 24 C -0.173 4.173 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.251 0.749 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.124 0.876 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.246 -24.359 -4.527 28.580 hybrid contribution -0.210 0.900 -0.643 1.126 sum -14.457 -23.459 -5.170 28.037 Atomic orbital electron populations 1.21767 0.92544 1.03441 1.02857 1.22670 0.96498 0.82736 1.00824 1.87789 1.21036 1.28194 1.95628 1.22043 0.80692 0.95940 1.01021 1.21446 0.90477 0.97938 1.07403 1.20801 0.91000 0.82892 0.74948 1.90694 1.66506 1.37758 1.51901 1.45993 1.08165 1.08469 1.74198 1.21311 0.79759 0.95619 1.01884 1.22579 0.97335 0.94195 0.98208 0.89004 1.23704 0.99979 0.99462 0.96302 1.21353 0.96051 0.83745 0.95404 0.92581 1.42421 1.73634 1.01281 1.20163 1.19063 1.31974 0.84774 1.00532 0.92633 1.25550 1.02751 0.94765 1.02757 1.69892 1.55303 0.97532 1.40762 0.85377 0.78587 0.77448 0.80164 1.20161 1.22531 1.17463 1.23363 0.95414 0.98678 0.99868 0.92133 0.92096 0.89207 0.92748 0.92805 0.93135 0.93238 0.86347 0.86202 0.74881 0.91632 0.91653 0.92732 0.89146 0.79929 0.93356 0.87641 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.05 0.67 6.66 71.98 0.48 1.15 16 3 O -0.41 -7.48 10.34 -148.98 -1.54 -9.02 16 4 C 0.08 1.45 5.23 71.98 0.38 1.83 16 5 C -0.13 -2.04 6.07 29.85 0.18 -1.86 16 6 C 0.52 10.95 7.83 87.66 0.69 11.63 16 7 O -0.59 -17.16 15.98 -3.04 -0.05 -17.20 16 8 N -0.72 -13.51 5.56 -463.05 -2.57 -16.08 16 9 C 0.14 2.94 5.51 86.38 0.48 3.41 16 10 C -0.10 -2.47 3.63 -10.26 -0.04 -2.51 16 11 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 12 C -0.15 -4.39 7.43 31.12 0.23 -4.15 16 13 C 0.14 5.07 4.56 45.52 0.21 5.28 16 14 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 15 N -0.73 -32.65 5.12 -320.44 -1.64 -34.29 16 16 C -0.23 -13.00 10.45 84.03 0.88 -12.13 16 17 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 18 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 19 N -0.98 -62.66 13.97 21.65 0.30 -62.36 16 20 Si 0.96 44.29 27.74 68.60 1.90 46.20 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.25 -10.31 6.52 99.48 0.65 -9.67 16 24 C -0.13 -3.53 7.39 31.12 0.23 -3.30 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 31 H 0.05 0.96 8.10 -2.38 -0.02 0.94 16 32 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.12 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.41 6.08 8.47 -92.71 -0.79 5.29 16 35 H 0.07 1.48 7.84 -2.38 -0.02 1.46 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 2.27 7.90 -2.39 -0.02 2.25 16 39 H 0.37 15.49 5.76 -92.71 -0.53 14.95 16 40 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.11 2.31 8.10 -2.39 -0.02 2.29 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -71.63 348.28 0.94 -70.69 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.38 Total: 26.96 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 4.92 Total: -4.90 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -3.91 Total: -112.73 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -1.59 Total: -26.22 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.90 Total: 46.20 kcal Total: -71.63 0.94 -70.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691770829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.298 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds