Wall clock time and date at job start Mon Mar 30 2020 00:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46939 * 2 1 4 4 C 1.46498 * 120.00063 * 82.99964 * 3 2 1 5 5 C 1.52994 * 109.47204 * 89.99872 * 4 3 2 6 6 N 1.46498 * 109.47204 * 180.02562 * 5 4 3 7 7 C 1.36941 * 120.00098 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00075 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99865 * 180.02562 * 7 6 5 10 10 N 1.31610 * 120.00141 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99672 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47423 * 59.99726 * 11 9 7 13 13 H 1.48503 * 109.46809 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47136 * 299.99570 * 11 9 7 15 15 C 1.34778 * 119.99858 * 262.99666 * 3 2 1 16 16 O 1.21274 * 120.00053 * 184.24650 * 15 3 2 17 17 C 1.50706 * 119.99944 * 4.24930 * 15 3 2 18 18 H 1.09000 * 110.80232 * 327.65625 * 17 15 3 19 19 C 1.54985 * 110.90939 * 91.32925 * 17 15 3 20 20 O 1.44380 * 103.49236 * 155.22105 * 19 17 15 21 21 C 1.43744 * 106.97408 * 319.93630 * 20 19 17 22 22 H 1.08996 * 110.00381 * 267.01994 * 21 20 19 23 23 C 1.53003 * 109.87758 * 145.93555 * 21 20 19 24 24 C 1.54103 * 107.29120 * 26.51295 * 21 20 19 25 25 H 1.08995 * 109.47443 * 292.95486 * 1 2 3 26 26 H 1.09004 * 109.47028 * 52.95881 * 1 2 3 27 27 H 1.09000 * 109.47116 * 172.95084 * 1 2 3 28 28 H 1.09005 * 109.46833 * 240.00183 * 2 1 3 29 29 H 1.08995 * 109.46860 * 119.99872 * 2 1 3 30 30 H 1.08997 * 109.47110 * 329.99828 * 4 3 2 31 31 H 1.08999 * 109.46822 * 209.99847 * 4 3 2 32 32 H 1.09008 * 109.47077 * 299.99844 * 5 4 3 33 33 H 1.09006 * 109.47278 * 59.99842 * 5 4 3 34 34 H 0.96995 * 119.99846 * 0.02562 * 6 5 4 35 35 H 0.96996 * 120.00256 * 180.02562 * 10 9 7 36 36 H 1.09004 * 110.61639 * 273.72295 * 19 17 15 37 37 H 1.08998 * 110.62119 * 36.71750 * 19 17 15 38 38 H 1.08994 * 109.47156 * 302.17177 * 23 21 20 39 39 H 1.09000 * 109.46995 * 62.17174 * 23 21 20 40 40 H 1.08997 * 109.46903 * 182.16945 * 23 21 20 41 41 H 1.08994 * 110.48788 * 239.28752 * 24 21 20 42 42 H 1.09005 * 110.48592 * 116.64701 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1167 2.1234 1.2592 5 6 3.5007 1.9045 1.8734 6 7 3.5989 2.6462 3.1330 7 6 4.7544 2.6002 3.8664 8 1 5.5932 2.0169 3.5165 9 6 4.8472 3.3026 5.0602 10 7 3.8248 4.0131 5.4868 11 14 6.4237 3.2404 6.0602 12 1 7.5478 3.7674 5.2456 13 1 6.2675 4.0693 7.2825 14 1 6.7091 1.8354 6.4475 15 6 2.3771 1.9691 -1.1585 16 8 2.8534 3.0844 -1.1505 17 6 2.1863 1.2406 -2.4639 18 1 2.3091 0.1660 -2.3291 19 6 0.8031 1.5668 -3.0823 20 8 1.0006 1.3306 -4.4929 21 6 2.3048 1.8362 -4.8244 22 1 2.2282 2.8666 -5.1712 23 6 2.9385 0.9670 -5.9125 24 6 3.1585 1.7767 -3.5429 25 1 -0.3634 0.4008 0.9462 26 1 -0.3633 0.6191 -0.8203 27 1 -0.3633 -1.0199 -0.1261 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.3522 1.7689 1.9506 31 1 1.9683 3.1860 1.0672 32 1 3.6491 0.8418 2.0655 33 1 4.2653 2.2591 1.1821 34 1 2.8451 3.1692 3.4478 35 1 3.8897 4.5041 6.3208 36 1 0.0381 0.8997 -2.6849 37 1 0.5375 2.6082 -2.9010 38 1 2.9956 -0.0648 -5.5660 39 1 2.3297 1.0139 -6.8155 40 1 3.9417 1.3329 -6.1313 41 1 3.5147 2.7714 -3.2752 42 1 3.9970 1.0928 -3.6745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699191475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:04 Heat of formation + Delta-G solvation = -71.700172 kcal Electronic energy + Delta-G solvation = -21325.976969 eV Core-core repulsion = 18113.426748 eV Total energy + Delta-G solvation = -3212.550222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66794 -38.85932 -36.26002 -34.62970 -32.65601 -32.18069 -31.37645 -30.34209 -27.76703 -26.22039 -24.31201 -23.56267 -22.75745 -21.52045 -21.05350 -18.83526 -17.79075 -17.14819 -16.53592 -15.84668 -15.62505 -15.49814 -14.72534 -14.48860 -14.07242 -13.92006 -13.58440 -13.57370 -13.21997 -12.95823 -12.78919 -12.63497 -12.55590 -12.23456 -11.92845 -11.64214 -11.39741 -11.24524 -11.10922 -10.94440 -10.89265 -10.73729 -10.65067 -10.13819 -9.96158 -9.78375 -9.62300 -8.85950 -8.56657 -6.92504 -5.75223 -3.04482 2.59709 2.95840 3.45583 3.49570 3.51003 3.59700 4.20628 4.45773 4.50072 4.61741 4.66113 4.76990 4.92045 4.96789 5.05086 5.11795 5.17478 5.34749 5.42921 5.44261 5.50623 5.60881 5.63044 5.64040 5.69228 5.75514 5.81307 5.84695 5.92637 6.02996 6.06577 6.14402 6.55182 6.61951 6.74054 6.91274 7.46685 7.70592 8.23024 8.43388 9.54126 10.10323 10.45459 11.47702 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029971 B = 0.003643 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.010754 B = 7684.115032 C = 8195.368632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.013 4.013 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.286 1.286 15 C 0.520 3.480 16 O -0.528 6.528 17 C -0.147 4.147 18 H 0.107 0.893 19 C 0.066 3.934 20 O -0.372 6.372 21 C 0.072 3.928 22 H 0.071 0.929 23 C -0.150 4.150 24 C -0.141 4.141 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.017 0.983 33 H 0.023 0.977 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.523 -9.891 -19.802 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.025 4.025 3 N -0.337 5.337 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.209 4.209 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.213 1.213 15 C 0.307 3.693 16 O -0.404 6.404 17 C -0.169 4.169 18 H 0.125 0.875 19 C -0.012 4.012 20 O -0.291 6.291 21 C 0.015 3.985 22 H 0.089 0.911 23 C -0.208 4.208 24 C -0.179 4.179 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.246 -9.420 -19.875 23.157 hybrid contribution 0.759 0.138 1.003 1.266 sum -6.487 -9.281 -18.872 22.008 Atomic orbital electron populations 1.22275 0.95750 1.02259 1.02852 1.21686 0.94563 0.82642 1.03578 1.47950 1.64460 1.14169 1.07107 1.21703 0.98996 0.97388 0.83326 1.20896 0.93688 0.95128 0.88809 1.42200 1.16325 1.57910 1.21070 1.19165 0.92259 1.24555 1.01053 0.91271 1.24744 0.97823 1.00063 0.98306 1.69645 1.30102 1.35309 1.23202 0.86236 0.82909 0.77318 0.79540 1.21222 1.21628 1.21253 1.20158 0.77888 0.86449 0.84846 1.90730 1.43164 1.19729 1.86741 1.22944 0.98203 1.01938 0.93780 0.87509 1.23451 0.95029 1.01660 0.81014 1.88877 1.34060 1.82320 1.23820 1.22773 0.82775 0.97844 0.95147 0.91102 1.21939 1.00430 1.00235 0.98169 1.23038 0.98092 1.04223 0.92565 0.91842 0.92424 0.91396 0.90158 0.89815 0.90440 0.89820 0.96518 0.95906 0.78280 0.93421 0.88220 0.91462 0.91860 0.91961 0.91139 0.88435 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.22 37.16 0.38 -1.04 16 2 C 0.10 0.97 6.03 -4.04 -0.02 0.94 16 3 N -0.60 -8.33 2.48 -173.69 -0.43 -8.76 16 4 C 0.11 1.86 5.51 -4.05 -0.02 1.83 16 5 C 0.14 3.06 6.58 -4.05 -0.03 3.04 16 6 N -0.73 -19.28 5.60 -59.91 -0.34 -19.61 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 11 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 C 0.52 7.60 6.86 -10.98 -0.08 7.52 16 16 O -0.53 -10.02 15.26 5.56 0.08 -9.94 16 17 C -0.15 -1.58 2.89 -89.77 -0.26 -1.84 16 18 H 0.11 0.94 5.90 -51.93 -0.31 0.63 16 19 C 0.07 0.66 7.01 38.21 0.27 0.93 16 20 O -0.37 -4.10 11.19 -35.23 -0.39 -4.50 16 21 C 0.07 0.70 4.06 -26.15 -0.11 0.59 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 23 C -0.15 -1.15 9.36 37.16 0.35 -0.80 16 24 C -0.14 -1.49 6.17 -25.20 -0.16 -1.65 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.46 6.26 -51.93 -0.33 0.14 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.63 5.63 -51.93 -0.29 0.33 16 29 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 30 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 31 H 0.08 1.60 7.48 -51.93 -0.39 1.21 16 32 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.38 10.48 7.67 -40.82 -0.31 10.17 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.10 0.81 6.45 -51.93 -0.33 0.48 16 37 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 1.23 6.84 -51.93 -0.36 0.88 16 42 H 0.08 0.76 7.70 -51.93 -0.40 0.36 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -33.95 338.08 -7.10 -41.06 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.90 Total: 4.92 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 0.08 Total: 1.95 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.04 Total: -56.41 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.31 Total: -14.43 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.95 -7.10 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699191475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.644 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds