Wall clock time and date at job start Mon Mar 30 2020 00:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46939 * 2 1 4 4 C 1.46498 * 120.00063 * 82.99964 * 3 2 1 5 5 C 1.52994 * 109.47204 * 89.99872 * 4 3 2 6 6 N 1.46498 * 109.47204 * 180.02562 * 5 4 3 7 7 C 1.36941 * 120.00098 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00075 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99865 * 180.02562 * 7 6 5 10 10 N 1.31610 * 120.00141 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99672 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47423 * 59.99726 * 11 9 7 13 13 H 1.48503 * 109.46809 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47136 * 299.99570 * 11 9 7 15 15 C 1.34778 * 119.99858 * 262.99666 * 3 2 1 16 16 O 1.21274 * 120.00053 * 184.24650 * 15 3 2 17 17 C 1.50706 * 119.99944 * 4.24930 * 15 3 2 18 18 H 1.09000 * 110.80232 * 327.65625 * 17 15 3 19 19 C 1.54985 * 110.90939 * 91.32925 * 17 15 3 20 20 O 1.44380 * 103.49236 * 155.22105 * 19 17 15 21 21 C 1.43744 * 106.97408 * 319.93630 * 20 19 17 22 22 H 1.08996 * 110.00381 * 267.01994 * 21 20 19 23 23 C 1.53003 * 109.87758 * 145.93555 * 21 20 19 24 24 C 1.54103 * 107.29120 * 26.51295 * 21 20 19 25 25 H 1.08995 * 109.47443 * 292.95486 * 1 2 3 26 26 H 1.09004 * 109.47028 * 52.95881 * 1 2 3 27 27 H 1.09000 * 109.47116 * 172.95084 * 1 2 3 28 28 H 1.09005 * 109.46833 * 240.00183 * 2 1 3 29 29 H 1.08995 * 109.46860 * 119.99872 * 2 1 3 30 30 H 1.08997 * 109.47110 * 329.99828 * 4 3 2 31 31 H 1.08999 * 109.46822 * 209.99847 * 4 3 2 32 32 H 1.09008 * 109.47077 * 299.99844 * 5 4 3 33 33 H 1.09006 * 109.47278 * 59.99842 * 5 4 3 34 34 H 0.96995 * 119.99846 * 0.02562 * 6 5 4 35 35 H 0.96996 * 120.00256 * 180.02562 * 10 9 7 36 36 H 1.09004 * 110.61639 * 273.72295 * 19 17 15 37 37 H 1.08998 * 110.62119 * 36.71750 * 19 17 15 38 38 H 1.08994 * 109.47156 * 302.17177 * 23 21 20 39 39 H 1.09000 * 109.46995 * 62.17174 * 23 21 20 40 40 H 1.08997 * 109.46903 * 182.16945 * 23 21 20 41 41 H 1.08994 * 110.48788 * 239.28752 * 24 21 20 42 42 H 1.09005 * 110.48592 * 116.64701 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1167 2.1234 1.2592 5 6 3.5007 1.9045 1.8734 6 7 3.5989 2.6462 3.1330 7 6 4.7544 2.6002 3.8664 8 1 5.5932 2.0169 3.5165 9 6 4.8472 3.3026 5.0602 10 7 3.8248 4.0131 5.4868 11 14 6.4237 3.2404 6.0602 12 1 7.5478 3.7674 5.2456 13 1 6.2675 4.0693 7.2825 14 1 6.7091 1.8354 6.4475 15 6 2.3771 1.9691 -1.1585 16 8 2.8534 3.0844 -1.1505 17 6 2.1863 1.2406 -2.4639 18 1 2.3091 0.1660 -2.3291 19 6 0.8031 1.5668 -3.0823 20 8 1.0006 1.3306 -4.4929 21 6 2.3048 1.8362 -4.8244 22 1 2.2282 2.8666 -5.1712 23 6 2.9385 0.9670 -5.9125 24 6 3.1585 1.7767 -3.5429 25 1 -0.3634 0.4008 0.9462 26 1 -0.3633 0.6191 -0.8203 27 1 -0.3633 -1.0199 -0.1261 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.3522 1.7689 1.9506 31 1 1.9683 3.1860 1.0672 32 1 3.6491 0.8418 2.0655 33 1 4.2653 2.2591 1.1821 34 1 2.8451 3.1692 3.4478 35 1 3.8897 4.5041 6.3208 36 1 0.0381 0.8997 -2.6849 37 1 0.5375 2.6082 -2.9010 38 1 2.9956 -0.0648 -5.5660 39 1 2.3297 1.0139 -6.8155 40 1 3.9417 1.3329 -6.1313 41 1 3.5147 2.7714 -3.2752 42 1 3.9970 1.0928 -3.6745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699191475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:04 Heat of formation + Delta-G solvation = -95.209005 kcal Electronic energy + Delta-G solvation = -21326.996389 eV Core-core repulsion = 18113.426748 eV Total energy + Delta-G solvation = -3213.569641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.69498 -39.84030 -37.58589 -36.41734 -33.89474 -33.30326 -32.58057 -31.53863 -29.34097 -26.99686 -26.01641 -24.47732 -24.15289 -22.86692 -22.01841 -19.96949 -19.24548 -18.69201 -17.62488 -17.05478 -16.50956 -16.49810 -16.29503 -15.93547 -15.29267 -15.17968 -15.04888 -14.85619 -14.58393 -14.31035 -13.68482 -13.45450 -13.35400 -13.08266 -12.97529 -12.89596 -12.79781 -12.65625 -12.42685 -12.32342 -12.19051 -12.10205 -11.89652 -11.79030 -11.57788 -10.99922 -10.85425 -10.75349 -9.78894 -9.09332 -7.99873 -5.31028 1.44235 1.46258 1.49041 1.55149 1.84348 2.53861 2.79896 3.31355 3.33513 3.58726 3.70477 3.84261 3.99772 4.03093 4.11610 4.15739 4.17398 4.22550 4.40768 4.44409 4.48149 4.52494 4.61390 4.70464 4.81055 4.87929 4.92838 4.97048 4.98543 5.06354 5.07878 5.10026 5.30640 5.40463 5.40983 5.52276 5.83726 6.21400 6.35774 7.08401 7.27552 7.98990 8.24548 9.23331 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029971 B = 0.003643 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.010754 B = 7684.115032 C = 8195.368632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 N -0.600 5.600 4 C 0.123 3.877 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.254 4.254 8 H 0.073 0.927 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.273 1.273 15 C 0.515 3.485 16 O -0.581 6.581 17 C -0.138 4.138 18 H 0.137 0.863 19 C 0.068 3.932 20 O -0.379 6.379 21 C 0.070 3.930 22 H 0.066 0.934 23 C -0.146 4.146 24 C -0.142 4.142 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.030 0.970 33 H -0.001 1.001 34 H 0.375 0.625 35 H 0.254 0.746 36 H 0.126 0.874 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 -12.274 -20.749 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.030 4.030 3 N -0.332 5.332 4 C 0.000 4.000 5 C 0.022 3.978 6 N -0.387 5.387 7 C -0.386 4.386 8 H 0.091 0.909 9 C -0.264 4.264 10 N -0.618 5.618 11 Si 0.806 3.194 12 H -0.206 1.206 13 H -0.217 1.217 14 H -0.198 1.198 15 C 0.304 3.696 16 O -0.461 6.461 17 C -0.159 4.159 18 H 0.154 0.846 19 C -0.009 4.009 20 O -0.299 6.299 21 C 0.012 3.988 22 H 0.084 0.916 23 C -0.203 4.203 24 C -0.180 4.180 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.207 0.793 35 H 0.063 0.937 36 H 0.143 0.857 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.304 -11.864 -20.859 25.084 hybrid contribution 0.761 0.869 1.247 1.700 sum -6.544 -10.995 -19.612 23.417 Atomic orbital electron populations 1.22247 0.94182 1.03934 1.02321 1.22036 0.95847 0.80120 1.05010 1.48048 1.64008 1.15581 1.05565 1.21307 0.96871 0.96739 0.85125 1.20939 0.95531 0.94751 0.86581 1.42387 1.15479 1.58369 1.22420 1.19561 0.93143 1.24368 1.01516 0.90929 1.25633 1.01264 0.99982 0.99569 1.69805 1.32171 1.36256 1.23552 0.85148 0.78815 0.77771 0.77626 1.20638 1.21701 1.19836 1.20880 0.76617 0.85947 0.86141 1.90710 1.45572 1.22243 1.87577 1.22972 0.98773 1.02852 0.91269 0.84554 1.23493 0.95132 1.01462 0.80794 1.88876 1.34645 1.82284 1.24077 1.22855 0.82330 0.98282 0.95287 0.91635 1.21927 1.00905 1.00088 0.97388 1.23042 0.98848 1.03132 0.93013 0.93124 0.92125 0.88706 0.87354 0.89780 0.88733 0.92366 0.95237 0.98319 0.79259 0.93718 0.85653 0.93122 0.91227 0.91598 0.89955 0.91190 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.22 71.98 0.74 -1.52 16 2 C 0.09 1.53 6.03 86.38 0.52 2.05 16 3 N -0.60 -16.02 2.48 -821.83 -2.03 -18.05 16 4 C 0.12 4.28 5.51 86.38 0.48 4.75 16 5 C 0.15 6.48 6.58 86.38 0.57 7.05 16 6 N -0.74 -39.99 5.60 -343.44 -1.92 -41.92 16 7 C -0.25 -14.87 9.99 84.03 0.84 -14.03 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 9 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 10 N -0.97 -60.42 13.06 21.65 0.28 -60.13 16 11 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 C 0.52 14.94 6.86 87.66 0.60 15.54 16 16 O -0.58 -23.03 15.26 -3.01 -0.05 -23.07 16 17 C -0.14 -2.71 2.89 -10.24 -0.03 -2.74 16 18 H 0.14 1.87 5.90 -2.39 -0.01 1.86 16 19 C 0.07 1.25 7.01 72.66 0.51 1.76 16 20 O -0.38 -7.62 11.19 -148.98 -1.67 -9.29 16 21 C 0.07 1.26 4.06 30.97 0.13 1.39 16 22 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 23 C -0.15 -1.89 9.36 71.98 0.67 -1.22 16 24 C -0.14 -2.87 6.17 31.59 0.19 -2.68 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.78 6.26 -2.38 -0.01 0.77 16 27 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.11 1.23 5.63 -2.38 -0.01 1.22 16 29 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 30 H 0.09 2.95 8.07 -2.39 -0.02 2.93 16 31 H 0.06 2.33 7.48 -2.39 -0.02 2.31 16 32 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 34 H 0.38 21.11 7.67 -92.71 -0.71 20.40 16 35 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.13 1.63 6.45 -2.39 -0.02 1.62 16 37 H 0.05 1.10 8.04 -2.39 -0.02 1.08 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 1.83 6.84 -2.39 -0.02 1.81 16 42 H 0.10 1.64 7.70 -2.38 -0.02 1.62 16 Total: -1.00 -74.80 338.08 2.61 -72.18 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.29 Total: 24.69 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 5.68 Total: 6.58 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -3.68 Total: -120.10 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.71 Total: -32.36 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -74.80 2.61 -72.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699191475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.026 kcal (2) G-P(sol) polarization free energy of solvation -74.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds