Wall clock time and date at job start Mon Mar 30 2020 00:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46501 * 109.47091 * 2 1 4 4 C 1.46501 * 119.99925 * 84.38640 * 3 2 1 5 5 C 1.53006 * 109.47092 * 89.99790 * 4 3 2 6 6 N 1.46496 * 109.46651 * 179.97438 * 5 4 3 7 7 C 1.36935 * 119.99870 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99880 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00355 * 180.02562 * 7 6 5 10 10 N 1.31622 * 119.99735 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00127 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47063 * 270.00029 * 11 9 7 13 13 H 1.48496 * 109.47084 * 30.00042 * 11 9 7 14 14 H 1.48503 * 109.47030 * 150.00054 * 11 9 7 15 15 C 1.34769 * 119.99875 * 264.38265 * 3 2 1 16 16 O 1.21287 * 120.00226 * 185.21673 * 15 3 2 17 17 C 1.50704 * 120.00467 * 5.21740 * 15 3 2 18 18 H 1.09003 * 110.98221 * 47.89217 * 17 15 3 19 19 C 1.54943 * 111.12408 * 283.69626 * 17 15 3 20 20 O 1.43695 * 105.10993 * 205.66862 * 19 17 15 21 21 C 1.43233 * 109.99604 * 24.36188 * 20 19 17 22 22 H 1.09001 * 109.83397 * 238.81537 * 21 20 19 23 23 C 1.52998 * 109.90702 * 117.88067 * 21 20 19 24 24 C 1.54384 * 107.58755 * 358.33048 * 21 20 19 25 25 H 1.08999 * 109.47558 * 299.99579 * 1 2 3 26 26 H 1.08995 * 109.47541 * 60.00169 * 1 2 3 27 27 H 1.09006 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47532 * 239.99864 * 2 1 3 29 29 H 1.09003 * 109.47364 * 120.00110 * 2 1 3 30 30 H 1.09003 * 109.46991 * 329.99766 * 4 3 2 31 31 H 1.09002 * 109.46951 * 209.99988 * 4 3 2 32 32 H 1.08999 * 109.46772 * 59.99965 * 5 4 3 33 33 H 1.09001 * 109.46860 * 299.99948 * 5 4 3 34 34 H 0.97001 * 120.00805 * 0.02562 * 6 5 4 35 35 H 0.96998 * 120.00208 * 0.02562 * 10 9 7 36 36 H 1.08993 * 110.31148 * 324.54613 * 19 17 15 37 37 H 1.09007 * 110.30871 * 86.72198 * 19 17 15 38 38 H 1.09008 * 109.47199 * 301.82684 * 23 21 20 39 39 H 1.09001 * 109.47325 * 61.82252 * 23 21 20 40 40 H 1.09000 * 109.47511 * 181.82596 * 23 21 20 41 41 H 1.09004 * 110.84715 * 220.45188 * 24 21 20 42 42 H 1.08999 * 110.85367 * 96.83154 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1454 2.1132 1.2627 5 6 3.5432 1.8894 1.8434 6 7 3.6704 2.6219 3.1057 7 6 4.8424 2.5703 3.8121 8 1 5.6730 1.9899 3.4384 9 6 4.9629 3.2639 5.0084 10 7 3.9504 3.9708 5.4641 11 14 6.5619 3.1940 5.9716 12 1 6.5169 2.0551 6.9236 13 1 7.6976 3.0098 5.0328 14 1 6.7422 4.4614 6.7242 15 6 2.3505 1.9784 -1.1615 16 8 2.8434 3.0866 -1.1544 17 6 2.1098 1.2694 -2.4694 18 1 1.1013 0.8577 -2.5103 19 6 3.1727 0.1683 -2.7115 20 8 3.2341 0.0143 -4.1389 21 6 2.7942 1.2169 -4.7806 22 1 1.9407 1.0021 -5.4237 23 6 3.9334 1.8108 -5.6115 24 6 2.3794 2.2110 -3.6746 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.3968 1.7530 1.9684 31 1 1.9927 3.1774 1.0827 32 1 4.2917 2.2496 1.1376 33 1 3.6957 0.8253 2.0233 34 1 2.9243 3.1429 3.4416 35 1 3.1200 4.0068 4.9641 36 1 4.1408 0.4851 -2.3236 37 1 2.8635 -0.7658 -2.2424 38 1 4.7891 2.0087 -4.9658 39 1 4.2216 1.1046 -6.3902 40 1 3.6014 2.7421 -6.0703 41 1 1.4744 2.7493 -3.9563 42 1 3.1907 2.9040 -3.4516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699191476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:06 Heat of formation + Delta-G solvation = -72.629763 kcal Electronic energy + Delta-G solvation = -21427.340528 eV Core-core repulsion = 18214.749996 eV Total energy + Delta-G solvation = -3212.590532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73866 -38.92233 -36.35653 -34.90252 -32.71788 -32.23495 -31.44481 -30.30280 -27.61575 -26.34718 -24.21825 -23.65659 -22.54298 -21.52157 -21.27413 -18.96459 -17.77755 -17.31004 -16.79625 -16.20728 -15.75147 -15.20561 -14.61722 -14.36729 -14.20713 -13.95107 -13.75411 -13.66164 -13.47395 -13.07821 -12.95712 -12.81015 -12.52530 -12.12113 -12.01206 -11.58509 -11.49632 -11.26709 -11.15825 -11.08364 -10.98175 -10.62736 -10.56518 -10.01109 -9.82485 -9.77224 -9.23613 -8.86836 -8.62094 -7.00412 -6.09443 -3.09304 2.53702 2.87552 3.51051 3.53214 3.58659 3.72710 4.06181 4.35971 4.51710 4.65872 4.70311 4.75160 4.80867 4.88075 5.00690 5.09747 5.15635 5.31109 5.39321 5.42317 5.45576 5.53515 5.58907 5.59341 5.65848 5.70935 5.71524 5.84954 5.87088 5.96266 6.00891 6.01478 6.45484 6.64869 6.70131 6.82643 7.39015 7.82277 8.15670 8.76739 9.23335 10.09507 10.23717 11.39316 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024395 B = 0.003888 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.498913 B = 7200.389960 C = 7753.900857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.095 3.905 3 N -0.605 5.605 4 C 0.108 3.892 5 C 0.149 3.851 6 N -0.742 5.742 7 C -0.330 4.330 8 H 0.064 0.936 9 C -0.045 4.045 10 N -0.944 5.944 11 Si 1.084 2.916 12 H -0.295 1.295 13 H -0.295 1.295 14 H -0.287 1.287 15 C 0.522 3.478 16 O -0.526 6.526 17 C -0.147 4.147 18 H 0.109 0.891 19 C 0.065 3.935 20 O -0.375 6.375 21 C 0.076 3.924 22 H 0.081 0.919 23 C -0.163 4.163 24 C -0.135 4.135 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.024 0.976 33 H 0.019 0.981 34 H 0.367 0.633 35 H 0.255 0.745 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 -9.661 -20.006 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.028 4.028 3 N -0.338 5.338 4 C -0.014 4.014 5 C 0.020 3.980 6 N -0.388 5.388 7 C -0.461 4.461 8 H 0.082 0.918 9 C -0.243 4.243 10 N -0.590 5.590 11 Si 0.915 3.085 12 H -0.223 1.223 13 H -0.221 1.221 14 H -0.213 1.213 15 C 0.309 3.691 16 O -0.402 6.402 17 C -0.169 4.169 18 H 0.127 0.873 19 C -0.012 4.012 20 O -0.295 6.295 21 C 0.019 3.981 22 H 0.099 0.901 23 C -0.221 4.221 24 C -0.172 4.172 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.200 0.800 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.584 -8.838 -18.817 21.807 hybrid contribution -1.181 -0.325 -1.105 1.650 sum -7.765 -9.163 -19.922 23.263 Atomic orbital electron populations 1.22206 0.95742 1.02365 1.02634 1.21767 0.94632 0.82598 1.03768 1.47909 1.64975 1.14245 1.06684 1.21701 0.98827 0.97475 0.83421 1.20837 0.93467 0.95172 0.88505 1.42224 1.15324 1.59037 1.22222 1.20046 0.92114 1.29180 1.04777 0.91755 1.25809 1.05116 0.97170 0.96176 1.70850 1.04041 1.42938 1.41181 0.83177 0.73741 0.76202 0.75378 1.22284 1.22136 1.21309 1.20144 0.78020 0.86229 0.84749 1.90744 1.42337 1.20100 1.86987 1.23053 1.02116 0.97851 0.93886 0.87271 1.23401 0.97765 0.97722 0.82320 1.88443 1.87825 1.35731 1.17493 1.22766 0.96743 0.84401 0.94238 0.90071 1.22145 0.98794 1.00809 1.00319 1.23138 1.03952 0.98004 0.92145 0.91918 0.92589 0.91330 0.90079 0.89711 0.90558 0.89963 0.95772 0.96363 0.80039 0.93406 0.91364 0.88768 0.91908 0.91918 0.91352 0.89637 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.20 37.15 0.38 -1.03 16 2 C 0.10 0.94 5.82 -4.05 -0.02 0.91 16 3 N -0.60 -8.34 2.47 -173.68 -0.43 -8.77 16 4 C 0.11 1.85 5.50 -4.04 -0.02 1.83 16 5 C 0.15 3.21 6.58 -4.04 -0.03 3.19 16 6 N -0.74 -19.63 5.60 -59.91 -0.34 -19.96 16 7 C -0.33 -9.73 9.99 -15.06 -0.15 -9.88 16 8 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 9 C -0.05 -1.36 5.50 -17.43 -0.10 -1.45 16 10 N -0.94 -29.86 13.70 55.49 0.76 -29.10 16 11 Si 1.08 26.63 29.92 -169.99 -5.09 21.54 16 12 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.52 7.62 6.98 -10.99 -0.08 7.54 16 16 O -0.53 -10.01 15.31 5.55 0.08 -9.92 16 17 C -0.15 -1.56 2.45 -89.52 -0.22 -1.78 16 18 H 0.11 0.92 7.11 -51.93 -0.37 0.55 16 19 C 0.06 0.67 6.69 38.18 0.26 0.93 16 20 O -0.38 -4.20 11.02 -35.23 -0.39 -4.59 16 21 C 0.08 0.71 4.15 -26.01 -0.11 0.60 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 23 C -0.16 -1.40 9.44 37.16 0.35 -1.05 16 24 C -0.13 -1.38 5.78 -24.78 -0.14 -1.52 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.44 7.44 -51.93 -0.39 0.05 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.64 4.37 -51.93 -0.23 0.41 16 29 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 30 H 0.08 1.19 8.07 -51.93 -0.42 0.78 16 31 H 0.08 1.56 7.50 -51.93 -0.39 1.17 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.37 9.75 6.50 -40.82 -0.27 9.48 16 35 H 0.25 7.91 6.77 -40.82 -0.28 7.64 16 36 H 0.07 0.81 8.02 -51.93 -0.42 0.39 16 37 H 0.09 0.78 6.22 -51.93 -0.32 0.46 16 38 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 1.20 6.96 -51.93 -0.36 0.84 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -35.26 336.63 -7.07 -42.33 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.87 Total: 5.12 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 0.12 Total: -1.71 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.00 Total: -57.83 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.30 Total: -14.51 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -5.09 Total: 21.54 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.26 -7.07 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699191476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.302 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds