Wall clock time and date at job start Mon Mar 30 2020 00:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46501 * 109.47091 * 2 1 4 4 C 1.46501 * 119.99925 * 84.38640 * 3 2 1 5 5 C 1.53006 * 109.47092 * 89.99790 * 4 3 2 6 6 N 1.46496 * 109.46651 * 179.97438 * 5 4 3 7 7 C 1.36935 * 119.99870 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99880 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00355 * 180.02562 * 7 6 5 10 10 N 1.31622 * 119.99735 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00127 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47063 * 270.00029 * 11 9 7 13 13 H 1.48496 * 109.47084 * 30.00042 * 11 9 7 14 14 H 1.48503 * 109.47030 * 150.00054 * 11 9 7 15 15 C 1.34769 * 119.99875 * 264.38265 * 3 2 1 16 16 O 1.21287 * 120.00226 * 185.21673 * 15 3 2 17 17 C 1.50704 * 120.00467 * 5.21740 * 15 3 2 18 18 H 1.09003 * 110.98221 * 47.89217 * 17 15 3 19 19 C 1.54943 * 111.12408 * 283.69626 * 17 15 3 20 20 O 1.43695 * 105.10993 * 205.66862 * 19 17 15 21 21 C 1.43233 * 109.99604 * 24.36188 * 20 19 17 22 22 H 1.09001 * 109.83397 * 238.81537 * 21 20 19 23 23 C 1.52998 * 109.90702 * 117.88067 * 21 20 19 24 24 C 1.54384 * 107.58755 * 358.33048 * 21 20 19 25 25 H 1.08999 * 109.47558 * 299.99579 * 1 2 3 26 26 H 1.08995 * 109.47541 * 60.00169 * 1 2 3 27 27 H 1.09006 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47532 * 239.99864 * 2 1 3 29 29 H 1.09003 * 109.47364 * 120.00110 * 2 1 3 30 30 H 1.09003 * 109.46991 * 329.99766 * 4 3 2 31 31 H 1.09002 * 109.46951 * 209.99988 * 4 3 2 32 32 H 1.08999 * 109.46772 * 59.99965 * 5 4 3 33 33 H 1.09001 * 109.46860 * 299.99948 * 5 4 3 34 34 H 0.97001 * 120.00805 * 0.02562 * 6 5 4 35 35 H 0.96998 * 120.00208 * 0.02562 * 10 9 7 36 36 H 1.08993 * 110.31148 * 324.54613 * 19 17 15 37 37 H 1.09007 * 110.30871 * 86.72198 * 19 17 15 38 38 H 1.09008 * 109.47199 * 301.82684 * 23 21 20 39 39 H 1.09001 * 109.47325 * 61.82252 * 23 21 20 40 40 H 1.09000 * 109.47511 * 181.82596 * 23 21 20 41 41 H 1.09004 * 110.84715 * 220.45188 * 24 21 20 42 42 H 1.08999 * 110.85367 * 96.83154 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1454 2.1132 1.2627 5 6 3.5432 1.8894 1.8434 6 7 3.6704 2.6219 3.1057 7 6 4.8424 2.5703 3.8121 8 1 5.6730 1.9899 3.4384 9 6 4.9629 3.2639 5.0084 10 7 3.9504 3.9708 5.4641 11 14 6.5619 3.1940 5.9716 12 1 6.5169 2.0551 6.9236 13 1 7.6976 3.0098 5.0328 14 1 6.7422 4.4614 6.7242 15 6 2.3505 1.9784 -1.1615 16 8 2.8434 3.0866 -1.1544 17 6 2.1098 1.2694 -2.4694 18 1 1.1013 0.8577 -2.5103 19 6 3.1727 0.1683 -2.7115 20 8 3.2341 0.0143 -4.1389 21 6 2.7942 1.2169 -4.7806 22 1 1.9407 1.0021 -5.4237 23 6 3.9334 1.8108 -5.6115 24 6 2.3794 2.2110 -3.6746 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.3968 1.7530 1.9684 31 1 1.9927 3.1774 1.0827 32 1 4.2917 2.2496 1.1376 33 1 3.6957 0.8253 2.0233 34 1 2.9243 3.1429 3.4416 35 1 3.1200 4.0068 4.9641 36 1 4.1408 0.4851 -2.3236 37 1 2.8635 -0.7658 -2.2424 38 1 4.7891 2.0087 -4.9658 39 1 4.2216 1.1046 -6.3902 40 1 3.6014 2.7421 -6.0703 41 1 1.4744 2.7493 -3.9563 42 1 3.1907 2.9040 -3.4516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699191476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:05 Heat of formation + Delta-G solvation = -97.293655 kcal Electronic energy + Delta-G solvation = -21428.410035 eV Core-core repulsion = 18214.749996 eV Total energy + Delta-G solvation = -3213.660039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.76290 -39.90426 -37.74178 -36.70788 -34.01568 -33.29713 -32.60613 -31.53569 -29.18935 -27.19854 -25.82878 -24.87289 -24.05196 -22.78031 -22.10329 -20.12606 -19.43807 -18.65045 -17.71821 -17.38549 -17.04869 -16.61274 -15.86420 -15.77036 -15.47980 -15.36198 -15.10709 -14.75785 -14.72045 -14.36678 -14.01085 -13.55440 -13.45703 -13.12056 -12.92093 -12.88067 -12.75371 -12.64690 -12.38305 -12.37127 -12.09683 -11.90494 -11.87419 -11.80420 -11.41775 -11.03394 -10.96451 -10.59983 -9.86114 -9.22322 -8.47789 -5.42970 1.39572 1.55541 1.67160 1.75849 1.82115 2.67003 2.71728 3.17982 3.32975 3.48182 3.71436 3.78942 3.86196 3.97245 4.02989 4.04962 4.06975 4.12884 4.34201 4.38908 4.42134 4.43569 4.60352 4.63600 4.72200 4.79744 4.82037 4.89996 4.94299 4.96734 4.97150 5.12977 5.28413 5.33576 5.41451 5.51585 5.92458 6.27923 6.42305 6.98305 7.02545 7.89235 7.99800 9.04190 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024395 B = 0.003888 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.498913 B = 7200.389960 C = 7753.900857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.089 3.911 3 N -0.602 5.602 4 C 0.124 3.876 5 C 0.155 3.845 6 N -0.755 5.755 7 C -0.342 4.342 8 H 0.063 0.937 9 C -0.100 4.100 10 N -0.970 5.970 11 Si 1.133 2.867 12 H -0.278 1.278 13 H -0.277 1.277 14 H -0.290 1.290 15 C 0.517 3.483 16 O -0.580 6.580 17 C -0.136 4.136 18 H 0.143 0.857 19 C 0.066 3.934 20 O -0.387 6.387 21 C 0.076 3.924 22 H 0.108 0.892 23 C -0.164 4.164 24 C -0.136 4.136 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.059 0.941 32 H -0.003 1.003 33 H 0.029 0.971 34 H 0.363 0.637 35 H 0.245 0.755 36 H 0.044 0.956 37 H 0.122 0.878 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 -11.709 -21.124 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.033 4.033 3 N -0.334 5.334 4 C 0.000 4.000 5 C 0.027 3.973 6 N -0.400 5.400 7 C -0.473 4.473 8 H 0.081 0.919 9 C -0.291 4.291 10 N -0.618 5.618 11 Si 0.957 3.043 12 H -0.204 1.204 13 H -0.202 1.202 14 H -0.216 1.216 15 C 0.305 3.695 16 O -0.460 6.460 17 C -0.158 4.158 18 H 0.161 0.839 19 C -0.010 4.010 20 O -0.306 6.306 21 C 0.019 3.981 22 H 0.125 0.875 23 C -0.221 4.221 24 C -0.174 4.174 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.015 0.985 33 H 0.047 0.953 34 H 0.195 0.805 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.139 0.861 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.461 -10.948 -19.980 23.973 hybrid contribution -0.922 0.295 -0.826 1.273 sum -8.383 -10.653 -20.806 24.832 Atomic orbital electron populations 1.22174 0.93974 1.03934 1.02341 1.22098 0.96047 0.80098 1.05008 1.48015 1.64532 1.15642 1.05173 1.21303 0.96418 0.96934 0.85329 1.20880 0.95563 0.94670 0.86195 1.42407 1.14535 1.59536 1.23519 1.20382 0.93034 1.28769 1.05158 0.91919 1.27343 1.07570 0.96638 0.97541 1.70961 1.04459 1.44619 1.41738 0.82571 0.70540 0.76514 0.74699 1.20387 1.20216 1.21587 1.20912 0.76703 0.85725 0.86111 1.90723 1.44719 1.22689 1.87824 1.23072 1.03872 0.97601 0.91220 0.83928 1.23417 0.96586 0.98677 0.82350 1.88437 1.88117 1.36466 1.17620 1.22926 0.97675 0.83542 0.93991 0.87456 1.22166 0.98082 1.01753 1.00139 1.23148 1.03768 0.97941 0.92535 0.93289 0.91863 0.88780 0.87616 0.89748 0.88655 0.92292 0.98519 0.95334 0.80487 0.94465 0.93771 0.86055 0.93843 0.91184 0.89931 0.87883 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.20 71.98 0.73 -1.45 16 2 C 0.09 1.51 5.82 86.38 0.50 2.01 16 3 N -0.60 -16.09 2.47 -821.80 -2.03 -18.12 16 4 C 0.12 4.30 5.50 86.38 0.48 4.77 16 5 C 0.15 6.82 6.58 86.38 0.57 7.38 16 6 N -0.75 -40.82 5.60 -343.45 -1.92 -42.75 16 7 C -0.34 -20.40 9.99 84.03 0.84 -19.56 16 8 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 9 C -0.10 -5.98 5.50 84.86 0.47 -5.51 16 10 N -0.97 -62.16 13.70 21.65 0.30 -61.86 16 11 Si 1.13 53.35 29.92 68.60 2.05 55.40 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 14 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 15 C 0.52 14.97 6.98 87.66 0.61 15.58 16 16 O -0.58 -23.00 15.31 -3.05 -0.05 -23.05 16 17 C -0.14 -2.63 2.45 -10.08 -0.02 -2.65 16 18 H 0.14 1.83 7.11 -2.39 -0.02 1.81 16 19 C 0.07 1.25 6.69 72.65 0.49 1.74 16 20 O -0.39 -7.81 11.02 -148.98 -1.64 -9.45 16 21 C 0.08 1.25 4.15 31.06 0.13 1.38 16 22 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 23 C -0.16 -2.65 9.44 71.98 0.68 -1.97 16 24 C -0.14 -2.63 5.78 31.86 0.18 -2.45 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.76 7.44 -2.39 -0.02 0.74 16 27 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.11 1.28 4.37 -2.39 -0.01 1.27 16 29 H 0.08 1.49 8.11 -2.39 -0.02 1.47 16 30 H 0.10 2.94 8.07 -2.39 -0.02 2.92 16 31 H 0.06 2.33 7.50 -2.39 -0.02 2.31 16 32 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.36 19.90 6.50 -92.71 -0.60 19.29 16 35 H 0.24 15.61 6.77 -92.71 -0.63 14.98 16 36 H 0.04 1.04 8.02 -2.39 -0.02 1.02 16 37 H 0.12 1.59 6.22 -2.38 -0.01 1.57 16 38 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 1.73 6.96 -2.39 -0.02 1.71 16 Total: -1.00 -78.27 336.63 2.90 -75.37 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.54 Total: 25.19 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.65 Total: -0.73 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -3.66 Total: -122.73 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.69 Total: -32.50 kcal Atomic # 14 Polarization: 53.35 SS G_CDS: 2.05 Total: 55.40 kcal Total: -78.27 2.90 -75.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699191476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.923 kcal (2) G-P(sol) polarization free energy of solvation -78.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds