Wall clock time and date at job start Mon Mar 30 2020 00:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47408 * 2 1 4 4 C 1.46496 * 120.00058 * 270.00034 * 3 2 1 5 5 C 1.52998 * 109.47194 * 270.00100 * 4 3 2 6 6 N 1.46499 * 109.47512 * 180.02562 * 5 4 3 7 7 C 1.36931 * 120.00276 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00235 * 359.97438 * 7 6 5 9 9 C 1.38817 * 120.00109 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99772 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99938 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47200 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47129 * 120.00169 * 11 9 7 14 14 H 1.48504 * 109.46758 * 240.00373 * 11 9 7 15 15 C 1.34781 * 119.99940 * 89.99728 * 3 2 1 16 16 O 1.21276 * 119.99769 * 180.02562 * 15 3 2 17 17 C 1.50699 * 119.99901 * 0.02562 * 15 3 2 18 18 H 1.09002 * 110.43730 * 300.70028 * 17 15 3 19 19 C 1.54100 * 110.48783 * 63.24713 * 17 15 3 20 20 O 1.43739 * 107.29489 * 116.77810 * 19 17 15 21 21 C 1.44383 * 106.97729 * 26.51040 * 20 19 17 22 22 H 1.09003 * 110.61510 * 78.59774 * 21 20 19 23 23 C 1.53001 * 110.61990 * 201.43890 * 21 20 19 24 24 C 1.54816 * 110.59947 * 178.07591 * 17 15 3 25 25 H 1.09001 * 109.46659 * 59.99819 * 1 2 3 26 26 H 1.08999 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46617 * 300.00243 * 1 2 3 28 28 H 1.09002 * 109.47106 * 239.99907 * 2 1 3 29 29 H 1.09001 * 109.46659 * 120.00181 * 2 1 3 30 30 H 1.09003 * 109.47196 * 30.00153 * 4 3 2 31 31 H 1.09000 * 109.47521 * 149.99627 * 4 3 2 32 32 H 1.09004 * 109.46870 * 299.99613 * 5 4 3 33 33 H 1.09000 * 109.47273 * 59.99375 * 5 4 3 34 34 H 0.96999 * 119.99627 * 359.97438 * 6 5 4 35 35 H 0.97000 * 119.99784 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.87779 * 236.19997 * 19 17 15 37 37 H 1.08998 * 109.88076 * 357.20385 * 19 17 15 38 38 H 1.08996 * 109.47145 * 58.54784 * 23 21 20 39 39 H 1.08994 * 109.46971 * 178.54801 * 23 21 20 40 40 H 1.09000 * 109.46972 * 298.54698 * 23 21 20 41 41 H 1.08999 * 110.90817 * 338.58804 * 24 17 15 42 42 H 1.09005 * 110.90433 * 102.19132 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 7 3.9520 2.5224 -2.9788 7 6 5.1844 2.4503 -3.5714 8 1 5.9763 1.8843 -3.1036 9 6 5.4158 3.1047 -4.7736 10 7 4.4508 3.7949 -5.3435 11 14 7.0968 3.0057 -5.5823 12 1 8.0002 2.1751 -4.7463 13 1 6.9633 2.3921 -6.9279 14 1 7.6633 4.3720 -5.7153 15 6 2.2431 2.0165 1.1672 16 8 2.6469 3.1601 1.1672 17 6 1.9923 1.3059 2.4723 18 1 0.9505 0.9931 2.5413 19 6 2.9306 0.0918 2.6143 20 8 3.7759 0.3355 3.7509 21 6 3.0498 1.2162 4.6352 22 1 2.3061 0.6596 5.2055 23 6 4.0103 1.9478 5.5750 24 6 2.3654 2.2155 3.6682 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5818 1.6877 -2.0284 31 1 2.0957 3.1410 -1.1384 32 1 4.3884 2.2154 -0.9507 33 1 3.8746 0.7620 -1.8406 34 1 3.2409 3.0310 -3.3988 35 1 4.6124 4.2519 -6.1837 36 1 2.3442 -0.8129 2.7757 37 1 3.5369 -0.0153 1.7148 38 1 4.7298 2.5179 4.9875 39 1 3.4460 2.6254 6.2156 40 1 4.5392 1.2210 6.1916 41 1 3.0602 2.9970 3.3606 42 1 1.4731 2.6468 4.1221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699191478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:09 Heat of formation + Delta-G solvation = -70.364927 kcal Electronic energy + Delta-G solvation = -21480.829711 eV Core-core repulsion = 18268.337390 eV Total energy + Delta-G solvation = -3212.492321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72967 -38.74491 -36.26440 -34.65061 -32.60799 -32.19959 -31.38351 -30.32716 -27.72956 -26.29481 -24.29896 -23.70441 -22.36186 -21.55406 -21.12121 -18.92420 -17.30762 -17.11733 -16.78482 -16.32165 -15.71484 -15.21193 -14.64864 -14.46667 -13.96909 -13.90174 -13.64453 -13.45229 -13.20057 -12.95367 -12.80923 -12.58617 -12.33917 -12.06386 -12.01737 -11.46098 -11.30107 -11.25591 -11.15514 -11.06366 -10.94757 -10.86575 -10.66024 -10.07601 -10.00955 -9.73941 -9.53974 -8.85643 -8.54994 -6.91097 -5.74209 -3.03287 2.65462 2.99093 3.45928 3.51616 3.54036 3.59199 4.15991 4.33242 4.61566 4.63707 4.73934 4.77882 4.87956 4.96254 5.06919 5.15846 5.25514 5.26401 5.38846 5.49734 5.53047 5.56624 5.60584 5.64420 5.67750 5.72698 5.82340 5.93179 6.00830 6.03809 6.06395 6.15592 6.56859 6.67826 6.75580 6.92612 7.48295 7.73342 8.25460 8.44363 9.55379 10.11426 10.46593 11.48843 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022036 B = 0.004091 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.316984 B = 6842.943689 C = 7493.267322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 N -0.606 5.606 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.237 4.237 8 H 0.071 0.929 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.520 3.480 16 O -0.526 6.526 17 C -0.146 4.146 18 H 0.107 0.893 19 C 0.058 3.942 20 O -0.370 6.370 21 C 0.071 3.929 22 H 0.070 0.930 23 C -0.147 4.147 24 C -0.137 4.137 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.023 0.977 33 H 0.018 0.982 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.046 -9.526 19.785 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.030 4.030 3 N -0.339 5.339 4 C -0.014 4.014 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.089 0.911 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C 0.307 3.693 16 O -0.402 6.402 17 C -0.167 4.167 18 H 0.125 0.875 19 C -0.019 4.019 20 O -0.289 6.289 21 C 0.014 3.986 22 H 0.088 0.912 23 C -0.204 4.204 24 C -0.175 4.175 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.439 -9.038 19.778 23.706 hybrid contribution 0.298 0.089 -0.850 0.905 sum -9.141 -8.950 18.928 22.846 Atomic orbital electron populations 1.22215 0.95839 1.02255 1.02626 1.21795 0.94526 0.82817 1.03867 1.47915 1.65539 1.14221 1.06242 1.21706 0.98170 0.98378 0.83180 1.20906 0.92741 0.95494 0.89425 1.42214 1.12894 1.60757 1.21646 1.19261 0.89270 1.25996 1.02296 0.91136 1.24747 0.97858 1.00339 0.98054 1.69673 1.31536 1.37497 1.19539 0.86092 0.83607 0.77252 0.79121 1.20533 1.21838 1.21803 1.20235 0.77475 0.86685 0.84906 1.90724 1.44736 1.17825 1.86919 1.22743 1.02164 0.97390 0.94450 0.87460 1.23213 0.92738 0.95388 0.90591 1.88929 1.40695 1.67718 1.31578 1.23175 0.93803 0.89933 0.91725 0.91215 1.21775 0.99619 1.00240 0.98794 1.23190 1.02277 0.98683 0.93315 0.91869 0.91410 0.92695 0.89525 0.90169 0.90480 0.89739 0.95939 0.96453 0.78284 0.93551 0.91337 0.89071 0.91428 0.91044 0.91826 0.88181 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.09 0.92 5.65 -4.04 -0.02 0.90 16 3 N -0.61 -8.49 2.45 -173.69 -0.43 -8.92 16 4 C 0.11 1.88 5.52 -4.05 -0.02 1.86 16 5 C 0.14 3.08 6.58 -4.04 -0.03 3.06 16 6 N -0.73 -19.40 5.60 -59.91 -0.34 -19.74 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.88 13.06 55.49 0.72 -28.15 16 11 Si 0.91 23.00 29.55 -169.99 -5.02 17.97 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 15 C 0.52 7.80 6.87 -10.98 -0.08 7.73 16 16 O -0.53 -10.26 15.04 5.56 0.08 -10.17 16 17 C -0.15 -1.56 2.64 -90.24 -0.24 -1.80 16 18 H 0.11 0.87 7.22 -51.93 -0.37 0.49 16 19 C 0.06 0.60 5.45 37.73 0.21 0.81 16 20 O -0.37 -4.57 11.22 -35.23 -0.40 -4.96 16 21 C 0.07 0.69 3.98 -25.68 -0.10 0.58 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 C -0.15 -1.27 9.66 37.16 0.36 -0.92 16 24 C -0.14 -1.46 5.95 -24.72 -0.15 -1.60 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.42 7.25 -51.93 -0.38 0.05 16 28 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.08 0.64 4.24 -51.93 -0.22 0.42 16 30 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 31 H 0.08 1.64 7.42 -51.93 -0.39 1.26 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.38 10.55 7.67 -40.82 -0.31 10.23 16 35 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.07 0.52 7.72 -51.93 -0.40 0.12 16 37 H 0.09 1.06 6.92 -51.93 -0.36 0.70 16 38 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 1.35 6.82 -51.93 -0.35 1.00 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -34.70 337.09 -7.20 -41.90 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.97 Total: 4.97 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 0.06 Total: 2.02 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.04 Total: -56.81 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.31 Total: -15.14 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.70 -7.20 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699191478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.463 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds