Wall clock time and date at job start Mon Mar 30 2020 00:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47408 * 2 1 4 4 C 1.46496 * 120.00058 * 270.00034 * 3 2 1 5 5 C 1.52998 * 109.47194 * 270.00100 * 4 3 2 6 6 N 1.46499 * 109.47512 * 180.02562 * 5 4 3 7 7 C 1.36931 * 120.00276 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00235 * 359.97438 * 7 6 5 9 9 C 1.38817 * 120.00109 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99772 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99938 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47200 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47129 * 120.00169 * 11 9 7 14 14 H 1.48504 * 109.46758 * 240.00373 * 11 9 7 15 15 C 1.34781 * 119.99940 * 89.99728 * 3 2 1 16 16 O 1.21276 * 119.99769 * 180.02562 * 15 3 2 17 17 C 1.50699 * 119.99901 * 0.02562 * 15 3 2 18 18 H 1.09002 * 110.43730 * 300.70028 * 17 15 3 19 19 C 1.54100 * 110.48783 * 63.24713 * 17 15 3 20 20 O 1.43739 * 107.29489 * 116.77810 * 19 17 15 21 21 C 1.44383 * 106.97729 * 26.51040 * 20 19 17 22 22 H 1.09003 * 110.61510 * 78.59774 * 21 20 19 23 23 C 1.53001 * 110.61990 * 201.43890 * 21 20 19 24 24 C 1.54816 * 110.59947 * 178.07591 * 17 15 3 25 25 H 1.09001 * 109.46659 * 59.99819 * 1 2 3 26 26 H 1.08999 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46617 * 300.00243 * 1 2 3 28 28 H 1.09002 * 109.47106 * 239.99907 * 2 1 3 29 29 H 1.09001 * 109.46659 * 120.00181 * 2 1 3 30 30 H 1.09003 * 109.47196 * 30.00153 * 4 3 2 31 31 H 1.09000 * 109.47521 * 149.99627 * 4 3 2 32 32 H 1.09004 * 109.46870 * 299.99613 * 5 4 3 33 33 H 1.09000 * 109.47273 * 59.99375 * 5 4 3 34 34 H 0.96999 * 119.99627 * 359.97438 * 6 5 4 35 35 H 0.97000 * 119.99784 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.87779 * 236.19997 * 19 17 15 37 37 H 1.08998 * 109.88076 * 357.20385 * 19 17 15 38 38 H 1.08996 * 109.47145 * 58.54784 * 23 21 20 39 39 H 1.08994 * 109.46971 * 178.54801 * 23 21 20 40 40 H 1.09000 * 109.46972 * 298.54698 * 23 21 20 41 41 H 1.08999 * 110.90817 * 338.58804 * 24 17 15 42 42 H 1.09005 * 110.90433 * 102.19132 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 7 3.9520 2.5224 -2.9788 7 6 5.1844 2.4503 -3.5714 8 1 5.9763 1.8843 -3.1036 9 6 5.4158 3.1047 -4.7736 10 7 4.4508 3.7949 -5.3435 11 14 7.0968 3.0057 -5.5823 12 1 8.0002 2.1751 -4.7463 13 1 6.9633 2.3921 -6.9279 14 1 7.6633 4.3720 -5.7153 15 6 2.2431 2.0165 1.1672 16 8 2.6469 3.1601 1.1672 17 6 1.9923 1.3059 2.4723 18 1 0.9505 0.9931 2.5413 19 6 2.9306 0.0918 2.6143 20 8 3.7759 0.3355 3.7509 21 6 3.0498 1.2162 4.6352 22 1 2.3061 0.6596 5.2055 23 6 4.0103 1.9478 5.5750 24 6 2.3654 2.2155 3.6682 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5818 1.6877 -2.0284 31 1 2.0957 3.1410 -1.1384 32 1 4.3884 2.2154 -0.9507 33 1 3.8746 0.7620 -1.8406 34 1 3.2409 3.0310 -3.3988 35 1 4.6124 4.2519 -6.1837 36 1 2.3442 -0.8129 2.7757 37 1 3.5369 -0.0153 1.7148 38 1 4.7298 2.5179 4.9875 39 1 3.4460 2.6254 6.2156 40 1 4.5392 1.2210 6.1916 41 1 3.0602 2.9970 3.3606 42 1 1.4731 2.6468 4.1221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699191478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:09 Heat of formation + Delta-G solvation = -94.992719 kcal Electronic energy + Delta-G solvation = -21481.897652 eV Core-core repulsion = 18268.337390 eV Total energy + Delta-G solvation = -3213.560263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.75594 -39.73521 -37.60467 -36.45520 -33.94239 -33.24241 -32.62518 -31.54701 -29.29444 -27.17498 -25.89014 -24.86835 -23.74090 -22.74140 -22.10558 -20.10209 -19.20015 -18.17173 -17.74607 -17.46114 -16.90305 -16.48263 -16.10566 -15.72219 -15.38737 -15.20809 -15.00445 -14.82371 -14.44569 -14.28897 -13.79966 -13.30587 -13.23630 -13.08782 -12.96911 -12.87031 -12.78992 -12.69929 -12.35892 -12.26262 -12.12501 -12.10261 -11.90764 -11.87925 -11.77589 -11.04693 -11.00191 -10.53984 -9.78307 -9.10601 -8.01106 -5.32259 1.44062 1.46292 1.50516 1.56499 1.86640 2.53087 2.82549 3.26167 3.32312 3.46678 3.85330 3.93606 4.00486 4.00968 4.12933 4.16993 4.19439 4.25731 4.41272 4.47209 4.51244 4.54296 4.58747 4.62466 4.82854 4.83621 4.87033 4.96850 4.98625 5.03485 5.05840 5.17806 5.28528 5.37878 5.40562 5.53034 5.92766 6.20486 6.36364 7.09641 7.26645 7.97307 8.23413 9.22462 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022036 B = 0.004091 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.316984 B = 6842.943689 C = 7493.267322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.086 3.914 3 N -0.603 5.603 4 C 0.123 3.877 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.253 4.253 8 H 0.072 0.928 9 C -0.071 4.071 10 N -0.967 5.967 11 Si 0.978 3.022 12 H -0.268 1.268 13 H -0.285 1.285 14 H -0.292 1.292 15 C 0.511 3.489 16 O -0.584 6.584 17 C -0.136 4.136 18 H 0.147 0.853 19 C 0.056 3.944 20 O -0.399 6.399 21 C 0.071 3.929 22 H 0.103 0.897 23 C -0.149 4.149 24 C -0.140 4.140 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.058 0.942 32 H -0.005 1.005 33 H 0.030 0.970 34 H 0.376 0.624 35 H 0.254 0.746 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.078 -11.817 21.167 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.035 4.035 3 N -0.335 5.335 4 C -0.001 4.001 5 C 0.022 3.978 6 N -0.386 5.386 7 C -0.384 4.384 8 H 0.090 0.910 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.806 3.194 12 H -0.192 1.192 13 H -0.212 1.212 14 H -0.219 1.219 15 C 0.300 3.700 16 O -0.463 6.463 17 C -0.157 4.157 18 H 0.165 0.835 19 C -0.020 4.020 20 O -0.319 6.319 21 C 0.015 3.985 22 H 0.120 0.880 23 C -0.206 4.206 24 C -0.178 4.178 25 H 0.066 0.934 26 H 0.113 0.887 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.013 0.987 33 H 0.048 0.952 34 H 0.208 0.792 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.488 -11.390 21.192 26.245 hybrid contribution 0.618 0.792 -1.232 1.590 sum -9.870 -10.598 19.960 24.660 Atomic orbital electron populations 1.22181 0.93917 1.03922 1.02344 1.22137 0.96040 0.80217 1.05114 1.48020 1.65025 1.15728 1.04695 1.21301 0.95736 0.97570 0.85459 1.20938 0.94923 0.95181 0.86753 1.42391 1.12083 1.61138 1.23001 1.19619 0.90266 1.25872 1.02676 0.91036 1.25626 1.01788 1.00223 0.98739 1.69823 1.33605 1.38406 1.19886 0.85016 0.79098 0.77135 0.78130 1.19240 1.21186 1.21875 1.21135 0.76145 0.86237 0.86452 1.90701 1.47251 1.20547 1.87823 1.22813 1.04438 0.97076 0.91361 0.83541 1.23346 0.92535 0.96539 0.89620 1.88902 1.42264 1.68263 1.32460 1.23380 0.94243 0.89570 0.91332 0.87951 1.21821 0.99477 1.00526 0.98757 1.23198 1.02530 0.98159 0.93868 0.93366 0.88695 0.91834 0.89606 0.87680 0.88672 0.92384 0.98680 0.95176 0.79213 0.93706 0.87181 0.91010 0.93850 0.88933 0.91167 0.92029 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 71.98 0.74 -1.39 16 2 C 0.09 1.48 5.65 86.38 0.49 1.97 16 3 N -0.60 -16.58 2.45 -821.82 -2.01 -18.59 16 4 C 0.12 4.39 5.52 86.38 0.48 4.86 16 5 C 0.15 6.65 6.58 86.38 0.57 7.22 16 6 N -0.74 -40.57 5.60 -343.45 -1.92 -42.49 16 7 C -0.25 -14.98 9.99 84.04 0.84 -14.14 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 9 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 10 N -0.97 -60.74 13.06 21.65 0.28 -60.46 16 11 Si 0.98 47.56 29.55 68.60 2.03 49.58 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 14 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 15 C 0.51 15.33 6.87 87.66 0.60 15.94 16 16 O -0.58 -23.95 15.04 -3.02 -0.05 -23.99 16 17 C -0.14 -2.62 2.64 -10.55 -0.03 -2.64 16 18 H 0.15 1.69 7.22 -2.39 -0.02 1.67 16 19 C 0.06 1.03 5.45 72.35 0.39 1.42 16 20 O -0.40 -9.19 11.22 -148.98 -1.67 -10.86 16 21 C 0.07 1.22 3.98 31.27 0.12 1.35 16 22 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 23 C -0.15 -2.42 9.66 71.98 0.70 -1.72 16 24 C -0.14 -2.80 5.95 31.89 0.19 -2.61 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.72 7.25 -2.39 -0.02 0.71 16 28 H 0.09 1.53 8.07 -2.39 -0.02 1.51 16 29 H 0.11 1.30 4.24 -2.39 -0.01 1.29 16 30 H 0.10 3.03 8.07 -2.39 -0.02 3.01 16 31 H 0.06 2.38 7.42 -2.39 -0.02 2.36 16 32 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.38 21.38 7.67 -92.71 -0.71 20.67 16 35 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.11 1.12 7.72 -2.38 -0.02 1.10 16 37 H 0.07 1.57 6.92 -2.39 -0.02 1.55 16 38 H 0.04 0.90 8.13 -2.39 -0.02 0.88 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.74 6.82 -2.39 -0.02 1.72 16 42 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -78.41 337.09 2.50 -75.91 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.29 Total: 24.42 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.55 Total: 6.48 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -3.66 Total: -121.54 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -1.72 Total: -34.86 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.58 kcal Total: -78.41 2.50 -75.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699191478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.081 kcal (2) G-P(sol) polarization free energy of solvation -78.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds