Wall clock time and date at job start Mon Mar 30 2020 01:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42900 * 109.47008 * 2 1 4 4 C 1.42898 * 113.99599 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46854 * 179.97438 * 4 3 2 6 6 C 1.50699 * 115.55104 * 294.70129 * 5 4 3 7 7 O 1.21280 * 120.00107 * 246.54034 * 6 5 4 8 8 N 1.34780 * 119.99959 * 66.53890 * 6 5 4 9 9 C 1.46498 * 120.00033 * 174.87183 * 8 6 5 10 10 H 1.08999 * 109.47062 * 325.00175 * 9 8 6 11 11 C 1.52995 * 109.47058 * 85.00421 * 9 8 6 12 12 C 1.52999 * 109.47061 * 205.00241 * 9 8 6 13 13 N 1.46498 * 109.47223 * 54.99782 * 12 9 8 14 14 C 1.36938 * 119.99887 * 179.72331 * 13 12 9 15 15 H 1.07997 * 120.00304 * 0.27889 * 14 13 12 16 16 C 1.38811 * 119.99819 * 180.28101 * 14 13 12 17 17 N 1.31620 * 120.00060 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00153 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46756 * 59.99627 * 18 16 14 20 20 H 1.48494 * 109.47439 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46677 * 300.00072 * 18 16 14 22 22 C 1.53001 * 117.49540 * 80.37538 * 5 4 3 23 23 C 1.53001 * 117.49457 * 149.03550 * 5 4 3 24 24 H 1.08998 * 109.46454 * 60.00120 * 1 2 3 25 25 H 1.08998 * 109.46858 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46885 * 300.00523 * 1 2 3 27 27 H 1.08997 * 109.46885 * 239.99477 * 2 1 3 28 28 H 1.09004 * 109.46347 * 119.99438 * 2 1 3 29 29 H 1.09003 * 109.47129 * 60.00077 * 4 3 2 30 30 H 1.08992 * 109.47282 * 299.99885 * 4 3 2 31 31 H 0.97003 * 119.99606 * 354.87657 * 8 6 5 32 32 H 1.09003 * 109.47459 * 180.02562 * 11 9 8 33 33 H 1.09006 * 109.47265 * 299.99713 * 11 9 8 34 34 H 1.08993 * 109.47505 * 59.99550 * 11 9 8 35 35 H 1.09006 * 109.47040 * 294.99894 * 12 9 8 36 36 H 1.09002 * 109.47374 * 175.00156 * 12 9 8 37 37 H 0.97006 * 119.99952 * 0.02562 * 13 12 9 38 38 H 0.97009 * 120.00064 * 180.02562 * 17 16 14 39 39 H 1.08999 * 117.49496 * 214.99593 * 22 5 4 40 40 H 1.08993 * 117.50134 * 0.02562 * 22 5 4 41 41 H 1.08998 * 117.49949 * 359.97438 * 23 5 4 42 42 H 1.09006 * 117.49788 * 144.97525 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 -0.0001 6 6 3.4447 3.7121 -1.2359 7 8 4.3074 4.1427 -1.9716 8 7 2.1454 3.9256 -1.5237 9 6 1.7765 4.7718 -2.6613 10 1 2.4995 5.5812 -2.7616 11 6 1.7701 3.9322 -3.9403 12 6 0.3827 5.3587 -2.4296 13 7 0.3567 6.0628 -1.1452 14 6 -0.7923 6.6777 -0.7246 15 1 -1.6806 6.6398 -1.3376 16 6 -0.8153 7.3499 0.4897 17 7 0.2671 7.3957 1.2371 18 14 -2.3829 8.1881 1.0638 19 1 -3.4653 7.1795 1.1915 20 1 -2.1469 8.8298 2.3820 21 1 -2.7827 9.2208 0.0745 22 6 3.7877 3.6801 1.3375 23 6 5.1317 3.3211 0.6985 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8341 0.9764 -0.8892 30 1 3.8333 0.9767 0.8907 31 1 1.4545 3.5191 -0.9774 32 1 1.4961 4.5618 -4.7869 33 1 2.7631 3.5141 -4.1055 34 1 1.0472 3.1228 -3.8401 35 1 -0.3529 4.5543 -2.4179 36 1 0.1446 6.0572 -3.2318 37 1 1.1546 6.0972 -0.5946 38 1 0.2510 7.8651 2.0859 39 1 3.4876 4.7279 1.3236 40 1 3.4823 3.1150 2.2180 41 1 5.7097 2.5199 1.1590 42 1 5.7158 4.1325 0.2641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699410998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:58 Heat of formation + Delta-G solvation = -55.958014 kcal Electronic energy + Delta-G solvation = -21799.101063 eV Core-core repulsion = 18587.233472 eV Total energy + Delta-G solvation = -3211.867591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93093 -38.01853 -36.62731 -35.58888 -33.52033 -31.41105 -31.09636 -29.81425 -27.06587 -25.61626 -23.54364 -22.86262 -22.41425 -22.21339 -20.26976 -19.29726 -17.28414 -16.87930 -16.50206 -16.01992 -15.64420 -15.29937 -14.68550 -14.28198 -13.89515 -13.56619 -13.40989 -13.33761 -13.11396 -12.58628 -12.34796 -12.14996 -12.10562 -11.86340 -11.55323 -11.50554 -11.38536 -11.26850 -10.86115 -10.78351 -10.46923 -10.41085 -10.14992 -10.01852 -9.70567 -9.68669 -9.28748 -8.86353 -8.50667 -6.90618 -5.73728 -3.02694 2.94515 3.31147 3.45404 3.49710 3.50718 3.70881 4.06195 4.60823 4.72100 4.90791 4.93582 4.98936 5.06574 5.17480 5.27577 5.30395 5.37688 5.54085 5.59332 5.61594 5.65116 5.72621 5.75040 5.87211 5.92492 6.10823 6.11791 6.13078 6.19008 6.26286 6.31219 6.48670 6.57899 6.79091 7.10681 7.13212 7.71306 8.10948 8.44293 8.73264 9.55994 10.12811 10.48739 11.48672 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.005675 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.176944 B = 4932.863825 C = 5129.767644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.380 6.380 4 C 0.109 3.891 5 C -0.164 4.164 6 C 0.555 3.445 7 O -0.554 6.554 8 N -0.696 5.696 9 C 0.133 3.867 10 H 0.083 0.917 11 C -0.156 4.156 12 C 0.145 3.855 13 N -0.730 5.730 14 C -0.241 4.241 15 H 0.069 0.931 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.287 1.287 22 C -0.142 4.142 23 C -0.140 4.140 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.412 0.588 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.024 0.976 36 H 0.032 0.968 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 -15.487 -2.195 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 O -0.300 6.300 4 C 0.033 3.967 5 C -0.167 4.167 6 C 0.341 3.659 7 O -0.433 6.433 8 N -0.346 5.346 9 C 0.028 3.972 10 H 0.101 0.899 11 C -0.215 4.215 12 C 0.017 3.983 13 N -0.375 5.375 14 C -0.372 4.372 15 H 0.087 0.913 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.179 4.179 23 C -0.177 4.177 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.248 0.752 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.050 0.950 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.977 -14.934 -2.709 16.312 hybrid contribution -0.838 0.047 0.790 1.153 sum 5.139 -14.887 -1.918 15.865 Atomic orbital electron populations 1.21747 0.93501 1.01973 1.03776 1.22432 0.95835 0.83687 0.99656 1.87930 1.20395 1.26337 1.95324 1.21785 0.81870 0.92658 1.00421 1.21345 1.05376 0.95249 0.94729 1.19240 0.82803 0.79153 0.84750 1.90644 1.49722 1.52318 1.50626 1.45938 1.07215 1.49847 1.31633 1.21234 0.98149 0.92625 0.85209 0.89891 1.22085 1.01844 1.00250 0.97304 1.20973 0.92227 0.94722 0.90394 1.42326 1.13123 1.63450 1.18566 1.19171 0.90383 1.25989 1.01686 0.91266 1.24727 0.97266 1.01332 0.97464 1.69657 1.27101 1.47623 1.13511 0.86275 0.82851 0.79349 0.77725 1.21329 1.21734 1.21334 1.23100 0.99076 1.02193 0.93575 1.22993 0.89977 1.03494 1.01261 0.91579 0.91380 0.91482 0.93685 0.93610 0.92828 0.92487 0.75170 0.91855 0.92480 0.92658 0.95826 0.95007 0.78006 0.93526 0.87145 0.87888 0.88205 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 37.16 0.38 -1.14 16 2 C 0.06 0.62 6.66 37.16 0.25 0.87 16 3 O -0.38 -5.09 9.13 -35.23 -0.32 -5.42 16 4 C 0.11 1.34 5.76 37.16 0.21 1.56 16 5 C -0.16 -2.41 2.17 -155.66 -0.34 -2.75 16 6 C 0.56 10.05 7.00 -10.98 -0.08 9.97 16 7 O -0.55 -11.50 16.39 5.56 0.09 -11.40 16 8 N -0.70 -12.53 4.45 -53.81 -0.24 -12.77 16 9 C 0.13 2.41 2.70 -67.93 -0.18 2.23 16 10 H 0.08 1.68 7.66 -51.93 -0.40 1.28 16 11 C -0.16 -2.35 9.48 37.16 0.35 -1.99 16 12 C 0.14 2.96 5.82 -4.04 -0.02 2.94 16 13 N -0.73 -18.60 5.43 -59.91 -0.33 -18.92 16 14 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 18 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C -0.14 -2.04 9.96 -26.69 -0.27 -2.31 16 23 C -0.14 -1.79 9.75 -26.69 -0.26 -2.05 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.41 7.56 7.48 -40.82 -0.31 7.25 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.39 10.47 7.33 -40.82 -0.30 10.17 16 38 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 39 H 0.11 1.88 8.14 -51.93 -0.42 1.45 16 40 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.11 1.50 8.01 -51.93 -0.42 1.08 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -32.01 353.05 -7.27 -39.28 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -7.30 Total: 13.80 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.20 Total: -0.01 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.16 Total: -59.01 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.23 Total: -16.82 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.01 -7.27 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699410998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.674 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds