Wall clock time and date at job start Mon Mar 30 2020 01:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42900 * 109.47008 * 2 1 4 4 C 1.42898 * 113.99599 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46854 * 179.97438 * 4 3 2 6 6 C 1.50699 * 115.55104 * 294.70129 * 5 4 3 7 7 O 1.21280 * 120.00107 * 246.54034 * 6 5 4 8 8 N 1.34780 * 119.99959 * 66.53890 * 6 5 4 9 9 C 1.46498 * 120.00033 * 174.87183 * 8 6 5 10 10 H 1.08999 * 109.47062 * 325.00175 * 9 8 6 11 11 C 1.52995 * 109.47058 * 85.00421 * 9 8 6 12 12 C 1.52999 * 109.47061 * 205.00241 * 9 8 6 13 13 N 1.46498 * 109.47223 * 54.99782 * 12 9 8 14 14 C 1.36938 * 119.99887 * 179.72331 * 13 12 9 15 15 H 1.07997 * 120.00304 * 0.27889 * 14 13 12 16 16 C 1.38811 * 119.99819 * 180.28101 * 14 13 12 17 17 N 1.31620 * 120.00060 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00153 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46756 * 59.99627 * 18 16 14 20 20 H 1.48494 * 109.47439 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46677 * 300.00072 * 18 16 14 22 22 C 1.53001 * 117.49540 * 80.37538 * 5 4 3 23 23 C 1.53001 * 117.49457 * 149.03550 * 5 4 3 24 24 H 1.08998 * 109.46454 * 60.00120 * 1 2 3 25 25 H 1.08998 * 109.46858 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46885 * 300.00523 * 1 2 3 27 27 H 1.08997 * 109.46885 * 239.99477 * 2 1 3 28 28 H 1.09004 * 109.46347 * 119.99438 * 2 1 3 29 29 H 1.09003 * 109.47129 * 60.00077 * 4 3 2 30 30 H 1.08992 * 109.47282 * 299.99885 * 4 3 2 31 31 H 0.97003 * 119.99606 * 354.87657 * 8 6 5 32 32 H 1.09003 * 109.47459 * 180.02562 * 11 9 8 33 33 H 1.09006 * 109.47265 * 299.99713 * 11 9 8 34 34 H 1.08993 * 109.47505 * 59.99550 * 11 9 8 35 35 H 1.09006 * 109.47040 * 294.99894 * 12 9 8 36 36 H 1.09002 * 109.47374 * 175.00156 * 12 9 8 37 37 H 0.97006 * 119.99952 * 0.02562 * 13 12 9 38 38 H 0.97009 * 120.00064 * 180.02562 * 17 16 14 39 39 H 1.08999 * 117.49496 * 214.99593 * 22 5 4 40 40 H 1.08993 * 117.50134 * 0.02562 * 22 5 4 41 41 H 1.08998 * 117.49949 * 359.97438 * 23 5 4 42 42 H 1.09006 * 117.49788 * 144.97525 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 -0.0001 6 6 3.4447 3.7121 -1.2359 7 8 4.3074 4.1427 -1.9716 8 7 2.1454 3.9256 -1.5237 9 6 1.7765 4.7718 -2.6613 10 1 2.4995 5.5812 -2.7616 11 6 1.7701 3.9322 -3.9403 12 6 0.3827 5.3587 -2.4296 13 7 0.3567 6.0628 -1.1452 14 6 -0.7923 6.6777 -0.7246 15 1 -1.6806 6.6398 -1.3376 16 6 -0.8153 7.3499 0.4897 17 7 0.2671 7.3957 1.2371 18 14 -2.3829 8.1881 1.0638 19 1 -3.4653 7.1795 1.1915 20 1 -2.1469 8.8298 2.3820 21 1 -2.7827 9.2208 0.0745 22 6 3.7877 3.6801 1.3375 23 6 5.1317 3.3211 0.6985 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8341 0.9764 -0.8892 30 1 3.8333 0.9767 0.8907 31 1 1.4545 3.5191 -0.9774 32 1 1.4961 4.5618 -4.7869 33 1 2.7631 3.5141 -4.1055 34 1 1.0472 3.1228 -3.8401 35 1 -0.3529 4.5543 -2.4179 36 1 0.1446 6.0572 -3.2318 37 1 1.1546 6.0972 -0.5946 38 1 0.2510 7.8651 2.0859 39 1 3.4876 4.7279 1.3236 40 1 3.4823 3.1150 2.2180 41 1 5.7097 2.5199 1.1590 42 1 5.7158 4.1325 0.2641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699410998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:58 Heat of formation + Delta-G solvation = -77.819277 kcal Electronic energy + Delta-G solvation = -21800.049038 eV Core-core repulsion = 18587.233472 eV Total energy + Delta-G solvation = -3212.815566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25615 -39.09777 -37.95652 -37.00948 -35.41455 -32.98853 -32.17059 -31.46319 -28.05716 -27.41888 -24.98094 -24.22475 -23.69349 -23.27082 -21.77932 -20.65544 -19.17090 -18.21895 -17.55218 -17.18798 -16.86381 -16.72663 -16.32096 -15.70121 -15.41845 -15.18386 -14.97079 -14.53895 -14.20764 -13.98683 -13.67257 -13.51684 -13.37888 -13.12668 -13.00979 -12.75100 -12.65608 -12.48163 -12.34758 -12.20016 -12.12723 -11.91017 -11.71813 -11.52532 -11.23202 -10.97590 -10.79353 -10.44201 -9.98996 -9.00495 -7.92620 -5.22550 1.47889 1.50967 1.56905 1.58075 2.12750 2.54966 2.57374 3.01585 3.40724 3.66754 3.67732 3.85533 3.88104 3.98591 4.06351 4.22738 4.27359 4.33803 4.46754 4.50128 4.55073 4.61757 4.71767 4.77316 4.83060 4.84881 4.90578 4.92302 4.98466 5.08521 5.10557 5.17997 5.28155 5.32990 5.50363 5.62618 6.27193 6.29526 6.64673 7.28915 7.34377 8.07176 8.32246 9.30137 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.005675 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.176944 B = 4932.863825 C = 5129.767644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.408 6.408 4 C 0.114 3.886 5 C -0.174 4.174 6 C 0.547 3.453 7 O -0.587 6.587 8 N -0.695 5.695 9 C 0.137 3.863 10 H 0.057 0.943 11 C -0.143 4.143 12 C 0.147 3.853 13 N -0.742 5.742 14 C -0.248 4.248 15 H 0.078 0.922 16 C -0.072 4.072 17 N -0.966 5.966 18 Si 0.974 3.026 19 H -0.276 1.276 20 H -0.297 1.297 21 H -0.280 1.280 22 C -0.149 4.149 23 C -0.120 4.120 24 H 0.051 0.949 25 H 0.092 0.908 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.410 0.590 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.039 0.961 37 H 0.373 0.627 38 H 0.250 0.750 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.140 0.860 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.179 -17.316 -2.288 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.328 6.328 4 C 0.038 3.962 5 C -0.177 4.177 6 C 0.334 3.666 7 O -0.469 6.469 8 N -0.344 5.344 9 C 0.032 3.968 10 H 0.075 0.925 11 C -0.202 4.202 12 C 0.020 3.980 13 N -0.385 5.385 14 C -0.380 4.380 15 H 0.096 0.904 16 C -0.265 4.265 17 N -0.616 5.616 18 Si 0.803 3.197 19 H -0.202 1.202 20 H -0.223 1.223 21 H -0.206 1.206 22 C -0.186 4.186 23 C -0.157 4.157 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.247 0.753 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.205 0.795 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.142 0.858 41 H 0.158 0.842 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.440 -16.787 -2.842 17.873 hybrid contribution -0.685 0.616 0.756 1.191 sum 4.755 -16.171 -2.086 16.984 Atomic orbital electron populations 1.21773 0.93688 1.03165 1.02317 1.22615 0.95719 0.82591 1.01114 1.87900 1.21032 1.28310 1.95585 1.21829 0.81659 0.90634 1.02120 1.21452 1.06943 0.96522 0.92809 1.19896 0.82276 0.78862 0.85540 1.90614 1.50370 1.53797 1.52093 1.45969 1.07417 1.49480 1.31573 1.21136 0.95983 0.92693 0.86983 0.92486 1.21975 1.02004 1.00321 0.95905 1.21105 0.93874 0.94689 0.88332 1.42496 1.12040 1.63881 1.20083 1.19595 0.91267 1.25356 1.01736 0.90422 1.25559 1.00377 1.02644 0.97890 1.69830 1.29182 1.48839 1.13733 0.85211 0.79298 0.78384 0.76815 1.20236 1.22291 1.20575 1.23015 1.00853 1.00373 0.94363 1.23105 0.89191 1.03822 0.99588 0.92974 0.88897 0.92930 0.92466 0.91775 0.92202 0.89506 0.75327 0.90000 0.93039 0.91196 0.94611 0.94291 0.79467 0.94105 0.90892 0.85843 0.84166 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 10.28 71.99 0.74 -2.09 16 2 C 0.06 1.02 6.66 71.99 0.48 1.50 16 3 O -0.41 -10.33 9.13 -148.98 -1.36 -11.69 16 4 C 0.11 2.55 5.76 71.98 0.41 2.96 16 5 C -0.17 -5.01 2.17 -52.93 -0.11 -5.12 16 6 C 0.55 20.14 7.00 87.66 0.61 20.75 16 7 O -0.59 -24.96 16.39 -3.03 -0.05 -25.01 16 8 N -0.69 -25.42 4.45 -442.54 -1.97 -27.39 16 9 C 0.14 5.02 2.70 44.99 0.12 5.15 16 10 H 0.06 2.39 7.66 -2.39 -0.02 2.37 16 11 C -0.14 -4.14 9.48 71.98 0.68 -3.46 16 12 C 0.15 5.97 5.82 86.38 0.50 6.47 16 13 N -0.74 -38.34 5.43 -343.45 -1.87 -40.21 16 14 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 15 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 16 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 17 N -0.97 -59.46 13.06 21.65 0.28 -59.18 16 18 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 C -0.15 -4.26 9.96 30.62 0.30 -3.96 16 23 C -0.12 -2.92 9.75 30.62 0.30 -2.62 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 31 H 0.41 15.29 7.48 -92.71 -0.69 14.60 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.56 8.09 -2.38 -0.02 1.54 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.37 20.96 7.33 -92.70 -0.68 20.28 16 38 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 39 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.09 2.53 8.01 -2.38 -0.02 2.51 16 Total: -1.00 -69.89 353.05 2.04 -67.85 By element: Atomic # 1 Polarization: 44.86 SS G_CDS: -0.38 Total: 44.48 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.35 Total: 2.82 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -3.55 Total: -126.78 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.41 Total: -36.70 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -69.89 2.04 -67.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699410998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.969 kcal (2) G-P(sol) polarization free energy of solvation -69.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds