Wall clock time and date at job start Mon Mar 30 2020 01:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99773 * 2 1 4 4 C 1.53002 * 109.47051 * 269.99740 * 3 2 1 5 5 C 1.52995 * 109.47254 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47443 * 180.02562 * 5 4 3 7 7 C 1.36932 * 120.00316 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99777 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00287 * 179.97438 * 7 6 5 10 10 N 1.31621 * 120.00283 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99887 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46995 * 89.99808 * 11 9 7 13 13 H 1.48493 * 109.47236 * 210.00008 * 11 9 7 14 14 H 1.48503 * 109.47014 * 330.00418 * 11 9 7 15 15 C 1.34773 * 120.00444 * 179.97438 * 2 1 3 16 16 O 1.21281 * 119.99979 * 180.02562 * 15 2 1 17 17 C 1.50699 * 119.99991 * 0.02562 * 15 2 1 18 18 C 1.53175 * 109.54351 * 299.55662 * 17 15 2 19 19 C 1.53094 * 109.16661 * 183.15290 * 18 17 15 20 20 O 1.42898 * 109.41211 * 57.60371 * 19 18 17 21 21 C 1.42897 * 114.10001 * 298.84343 * 20 19 18 22 22 C 1.53089 * 109.41656 * 61.16248 * 21 20 19 23 23 H 1.08998 * 109.47587 * 270.00021 * 1 2 3 24 24 H 1.08998 * 109.46895 * 30.00699 * 1 2 3 25 25 H 1.09008 * 109.46858 * 149.99776 * 1 2 3 26 26 H 1.08998 * 109.47126 * 29.99331 * 3 2 1 27 27 H 1.09001 * 109.47221 * 149.99559 * 3 2 1 28 28 H 1.09001 * 109.46886 * 300.00310 * 4 3 2 29 29 H 1.09001 * 109.47256 * 59.99840 * 4 3 2 30 30 H 1.09001 * 109.47496 * 300.00021 * 5 4 3 31 31 H 1.09001 * 109.47051 * 59.99799 * 5 4 3 32 32 H 0.96999 * 119.99691 * 359.97438 * 6 5 4 33 33 H 0.96999 * 120.00260 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.61503 * 59.77219 * 17 15 2 35 35 H 1.09004 * 109.52259 * 303.05556 * 18 17 15 36 36 H 1.09006 * 109.52330 * 63.24389 * 18 17 15 37 37 H 1.09006 * 109.47665 * 297.62062 * 19 18 17 38 38 H 1.08993 * 109.47955 * 177.58818 * 19 18 17 39 39 H 1.09002 * 109.48425 * 301.17758 * 21 20 19 40 40 H 1.09001 * 109.49443 * 181.15303 * 21 20 19 41 41 H 1.08997 * 109.52675 * 182.48845 * 22 21 20 42 42 H 1.08995 * 109.52428 * 62.29514 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2169 3.0358 -1.4426 6 7 3.4605 3.4590 -2.8238 7 6 4.1335 4.6249 -3.0740 8 1 4.4851 5.2324 -2.2531 9 6 4.3649 5.0257 -4.3828 10 7 5.0122 6.1462 -4.6233 11 14 3.7587 3.9740 -5.8026 12 1 2.3852 4.3946 -6.1791 13 1 4.6650 4.1438 -6.9666 14 1 3.7440 2.5473 -5.3907 15 6 2.1389 -1.1671 0.0005 16 8 3.3518 -1.1670 0.0010 17 6 1.3855 -2.4723 0.0005 18 6 0.5122 -2.5598 1.2559 19 6 -0.1882 -3.9207 1.2870 20 8 0.7919 -4.9602 1.2544 21 6 1.6069 -4.9570 0.0807 22 6 2.3795 -3.6378 0.0011 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6083 2.0284 0.5137 27 1 3.1499 1.1385 0.5139 28 1 3.0416 0.9507 -1.9563 29 1 1.5001 1.8407 -1.9564 30 1 2.6274 3.7952 -0.9289 31 1 4.1692 2.9059 -0.9285 32 1 3.1458 2.9128 -3.5610 33 1 5.1736 6.4264 -5.5378 34 1 0.7553 -2.5310 -0.8869 35 1 1.1369 -2.4513 2.1425 36 1 -0.2347 -1.7661 1.2361 37 1 -0.8439 -4.0120 0.4210 38 1 -0.7776 -4.0054 2.1999 39 1 0.9748 -5.0618 -0.8011 40 1 2.3106 -5.7883 0.1243 41 1 2.9680 -3.6150 -0.9160 42 1 3.0419 -3.5511 0.8623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699485403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:17 Heat of formation + Delta-G solvation = -73.489000 kcal Electronic energy + Delta-G solvation = -21037.856920 eV Core-core repulsion = 17825.229129 eV Total energy + Delta-G solvation = -3212.627791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74029 -38.90834 -36.34759 -35.11941 -34.07815 -32.18889 -31.45000 -30.24192 -27.23431 -26.76341 -24.79750 -23.89536 -22.50176 -21.16591 -20.78092 -19.31583 -17.53281 -17.38115 -16.70718 -16.40517 -16.02492 -15.57450 -14.98457 -14.70204 -14.43253 -14.36194 -13.98367 -13.79135 -13.32432 -12.96984 -12.93614 -12.76461 -12.50988 -12.21692 -12.01535 -11.83677 -11.60878 -11.20542 -11.08051 -10.92323 -10.84150 -10.77890 -10.51276 -10.18526 -10.11951 -9.63742 -9.57132 -8.87809 -8.77768 -7.21378 -5.75164 -3.10495 2.49105 2.83083 3.38392 3.41738 3.45940 3.49690 4.14104 4.26944 4.38740 4.57531 4.60812 4.70191 4.80157 4.91719 4.99771 5.04490 5.07645 5.16188 5.22529 5.25823 5.28612 5.37579 5.44448 5.53326 5.58685 5.62706 5.73920 5.78851 5.90989 5.94974 6.02274 6.24269 6.42156 6.75042 6.77784 6.79847 7.22964 8.01192 8.05653 8.44117 9.23082 9.95651 10.15835 11.43391 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034085 B = 0.003299 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.272538 B = 8486.163112 C = 8754.082333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.615 5.615 3 C 0.118 3.882 4 C -0.143 4.143 5 C 0.160 3.840 6 N -0.757 5.757 7 C -0.244 4.244 8 H 0.091 0.909 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.516 3.484 16 O -0.531 6.531 17 C -0.108 4.108 18 C -0.158 4.158 19 C 0.063 3.937 20 O -0.383 6.383 21 C 0.061 3.939 22 C -0.137 4.137 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.911 -21.794 12.436 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.348 5.348 3 C -0.004 4.004 4 C -0.182 4.182 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.193 4.193 10 N -0.583 5.583 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.304 3.696 16 O -0.407 6.407 17 C -0.130 4.130 18 C -0.196 4.196 19 C -0.014 4.014 20 O -0.302 6.302 21 C -0.016 4.016 22 C -0.175 4.175 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.110 -21.700 12.632 28.802 hybrid contribution -0.496 -0.264 -1.470 1.574 sum -14.606 -21.965 11.161 28.642 Atomic orbital electron populations 1.21968 0.79858 1.03421 1.01627 1.47894 1.06893 1.06389 1.73671 1.21486 0.97710 0.83548 0.97700 1.22105 1.00929 0.98976 0.96159 1.20517 0.96648 0.91905 0.87662 1.42705 1.69719 1.26202 1.01611 1.19084 1.27793 0.96832 0.93638 0.89169 1.24679 1.00470 0.97216 0.96907 1.69703 1.46124 1.23038 1.19463 0.86524 0.78415 0.80308 0.83181 1.21090 1.21650 1.20396 1.20547 0.87988 0.85123 0.75988 1.90729 1.13856 1.87204 1.48895 1.21355 0.98127 0.93299 1.00174 1.22460 1.00049 0.99363 0.97716 1.22573 0.90282 0.86161 1.02362 1.87944 1.48832 1.51380 1.42045 1.22637 0.93534 0.97626 0.87766 1.22030 0.97807 0.92955 1.04668 0.92219 0.90609 0.91052 0.90294 0.89599 0.91698 0.92086 0.95493 0.95378 0.80735 0.93063 0.88538 0.90400 0.89321 0.92973 0.88526 0.93078 0.88422 0.90005 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 8.81 59.85 0.53 1.05 16 2 N -0.62 -6.85 2.87 -181.57 -0.52 -7.37 16 3 C 0.12 1.54 5.41 -4.04 -0.02 1.51 16 4 C -0.14 -2.29 5.65 -26.73 -0.15 -2.44 16 5 C 0.16 3.21 6.26 -4.05 -0.03 3.19 16 6 N -0.76 -18.90 5.41 -59.91 -0.32 -19.22 16 7 C -0.24 -7.16 10.47 -15.06 -0.16 -7.32 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 10 N -0.94 -30.05 13.97 55.49 0.78 -29.27 16 11 Si 0.89 22.71 27.74 -169.99 -4.71 17.99 16 12 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 14 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 15 C 0.52 6.53 7.08 -10.99 -0.08 6.45 16 16 O -0.53 -9.04 15.55 5.56 0.09 -8.96 16 17 C -0.11 -0.97 1.80 -91.59 -0.16 -1.13 16 18 C -0.16 -1.09 5.03 -26.59 -0.13 -1.23 16 19 C 0.06 0.40 6.84 37.21 0.25 0.66 16 20 O -0.38 -3.45 10.76 -35.23 -0.38 -3.83 16 21 C 0.06 0.47 6.84 37.20 0.25 0.72 16 22 C -0.14 -1.28 4.73 -26.59 -0.13 -1.41 16 23 H 0.06 0.32 7.02 -51.93 -0.36 -0.05 16 24 H 0.08 0.51 8.07 -51.93 -0.42 0.10 16 25 H 0.07 0.38 5.99 -51.92 -0.31 0.07 16 26 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 27 H 0.09 1.26 7.42 -51.93 -0.39 0.87 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.36 8.78 5.53 -40.82 -0.23 8.56 16 33 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 34 H 0.10 0.71 7.40 -51.93 -0.38 0.33 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.45 4.68 -51.93 -0.24 0.21 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.90 8.02 -51.93 -0.42 0.48 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -35.79 331.45 -6.99 -42.77 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.99 Total: 2.85 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 0.08 Total: 0.04 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.07 Total: -55.87 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.29 Total: -12.78 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 17.99 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.79 -6.99 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699485403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.715 kcal (2) G-P(sol) polarization free energy of solvation -35.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds