Wall clock time and date at job start Mon Mar 30 2020 01:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99773 * 2 1 4 4 C 1.53002 * 109.47051 * 269.99740 * 3 2 1 5 5 C 1.52995 * 109.47254 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47443 * 180.02562 * 5 4 3 7 7 C 1.36932 * 120.00316 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99777 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00287 * 179.97438 * 7 6 5 10 10 N 1.31621 * 120.00283 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99887 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46995 * 89.99808 * 11 9 7 13 13 H 1.48493 * 109.47236 * 210.00008 * 11 9 7 14 14 H 1.48503 * 109.47014 * 330.00418 * 11 9 7 15 15 C 1.34773 * 120.00444 * 179.97438 * 2 1 3 16 16 O 1.21281 * 119.99979 * 180.02562 * 15 2 1 17 17 C 1.50699 * 119.99991 * 0.02562 * 15 2 1 18 18 C 1.53175 * 109.54351 * 299.55662 * 17 15 2 19 19 C 1.53094 * 109.16661 * 183.15290 * 18 17 15 20 20 O 1.42898 * 109.41211 * 57.60371 * 19 18 17 21 21 C 1.42897 * 114.10001 * 298.84343 * 20 19 18 22 22 C 1.53089 * 109.41656 * 61.16248 * 21 20 19 23 23 H 1.08998 * 109.47587 * 270.00021 * 1 2 3 24 24 H 1.08998 * 109.46895 * 30.00699 * 1 2 3 25 25 H 1.09008 * 109.46858 * 149.99776 * 1 2 3 26 26 H 1.08998 * 109.47126 * 29.99331 * 3 2 1 27 27 H 1.09001 * 109.47221 * 149.99559 * 3 2 1 28 28 H 1.09001 * 109.46886 * 300.00310 * 4 3 2 29 29 H 1.09001 * 109.47256 * 59.99840 * 4 3 2 30 30 H 1.09001 * 109.47496 * 300.00021 * 5 4 3 31 31 H 1.09001 * 109.47051 * 59.99799 * 5 4 3 32 32 H 0.96999 * 119.99691 * 359.97438 * 6 5 4 33 33 H 0.96999 * 120.00260 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.61503 * 59.77219 * 17 15 2 35 35 H 1.09004 * 109.52259 * 303.05556 * 18 17 15 36 36 H 1.09006 * 109.52330 * 63.24389 * 18 17 15 37 37 H 1.09006 * 109.47665 * 297.62062 * 19 18 17 38 38 H 1.08993 * 109.47955 * 177.58818 * 19 18 17 39 39 H 1.09002 * 109.48425 * 301.17758 * 21 20 19 40 40 H 1.09001 * 109.49443 * 181.15303 * 21 20 19 41 41 H 1.08997 * 109.52675 * 182.48845 * 22 21 20 42 42 H 1.08995 * 109.52428 * 62.29514 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2169 3.0358 -1.4426 6 7 3.4605 3.4590 -2.8238 7 6 4.1335 4.6249 -3.0740 8 1 4.4851 5.2324 -2.2531 9 6 4.3649 5.0257 -4.3828 10 7 5.0122 6.1462 -4.6233 11 14 3.7587 3.9740 -5.8026 12 1 2.3852 4.3946 -6.1791 13 1 4.6650 4.1438 -6.9666 14 1 3.7440 2.5473 -5.3907 15 6 2.1389 -1.1671 0.0005 16 8 3.3518 -1.1670 0.0010 17 6 1.3855 -2.4723 0.0005 18 6 0.5122 -2.5598 1.2559 19 6 -0.1882 -3.9207 1.2870 20 8 0.7919 -4.9602 1.2544 21 6 1.6069 -4.9570 0.0807 22 6 2.3795 -3.6378 0.0011 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6083 2.0284 0.5137 27 1 3.1499 1.1385 0.5139 28 1 3.0416 0.9507 -1.9563 29 1 1.5001 1.8407 -1.9564 30 1 2.6274 3.7952 -0.9289 31 1 4.1692 2.9059 -0.9285 32 1 3.1458 2.9128 -3.5610 33 1 5.1736 6.4264 -5.5378 34 1 0.7553 -2.5310 -0.8869 35 1 1.1369 -2.4513 2.1425 36 1 -0.2347 -1.7661 1.2361 37 1 -0.8439 -4.0120 0.4210 38 1 -0.7776 -4.0054 2.1999 39 1 0.9748 -5.0618 -0.8011 40 1 2.3106 -5.7883 0.1243 41 1 2.9680 -3.6150 -0.9160 42 1 3.0419 -3.5511 0.8623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699485403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:17 Heat of formation + Delta-G solvation = -99.633699 kcal Electronic energy + Delta-G solvation = -21038.990639 eV Core-core repulsion = 17825.229129 eV Total energy + Delta-G solvation = -3213.761511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56789 -39.63053 -37.68112 -36.57223 -34.98542 -33.96597 -32.25487 -31.76124 -28.12395 -27.76070 -26.01072 -24.54575 -24.06503 -22.74387 -21.55811 -20.17287 -19.69287 -18.21996 -17.53325 -17.03475 -16.86143 -16.65736 -16.23170 -15.97575 -15.71990 -15.54876 -15.09637 -14.81183 -14.60838 -14.30240 -13.88450 -13.76431 -13.63535 -13.40869 -12.96197 -12.81947 -12.79914 -12.51818 -12.47923 -12.21365 -12.09256 -11.87679 -11.83446 -11.66791 -11.42215 -11.01867 -10.92814 -10.40501 -9.70667 -9.36016 -8.07253 -5.41867 1.33981 1.38376 1.45786 1.55762 1.97102 2.44685 2.98423 3.23555 3.40517 3.56564 3.65043 3.76692 3.96585 4.00690 4.12870 4.20995 4.28246 4.33716 4.39315 4.50217 4.55269 4.60139 4.62581 4.68849 4.72260 4.78207 4.83383 4.86578 4.91354 5.09544 5.12694 5.21265 5.23382 5.25448 5.51542 5.70297 6.16878 6.27712 6.36687 7.02401 7.13096 7.78124 7.97686 9.14321 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034085 B = 0.003299 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.272538 B = 8486.163112 C = 8754.082333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.612 5.612 3 C 0.123 3.877 4 C -0.125 4.125 5 C 0.156 3.844 6 N -0.761 5.761 7 C -0.242 4.242 8 H 0.056 0.944 9 C -0.065 4.065 10 N -0.983 5.983 11 Si 0.960 3.040 12 H -0.270 1.270 13 H -0.293 1.293 14 H -0.259 1.259 15 C 0.507 3.493 16 O -0.588 6.588 17 C -0.102 4.102 18 C -0.151 4.151 19 C 0.059 3.941 20 O -0.406 6.406 21 C 0.065 3.935 22 C -0.136 4.136 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.014 0.986 32 H 0.365 0.635 33 H 0.260 0.740 34 H 0.122 0.878 35 H 0.057 0.943 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.325 -23.704 12.119 32.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.344 5.344 3 C 0.000 4.000 4 C -0.164 4.164 5 C 0.030 3.970 6 N -0.407 5.407 7 C -0.373 4.373 8 H 0.074 0.926 9 C -0.256 4.256 10 N -0.633 5.633 11 Si 0.787 3.213 12 H -0.196 1.196 13 H -0.219 1.219 14 H -0.183 1.183 15 C 0.296 3.704 16 O -0.468 6.468 17 C -0.123 4.123 18 C -0.188 4.188 19 C -0.017 4.017 20 O -0.325 6.325 21 C -0.011 4.011 22 C -0.175 4.175 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.112 0.888 26 H 0.125 0.875 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.198 0.802 33 H 0.069 0.931 34 H 0.140 0.860 35 H 0.076 0.924 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.130 0.870 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.592 -23.637 12.357 31.951 hybrid contribution 0.590 0.392 -1.259 1.444 sum -17.002 -23.245 11.098 30.863 Atomic orbital electron populations 1.22333 0.76780 1.04990 1.03673 1.47984 1.08726 1.05108 1.72553 1.21306 0.97813 0.85353 0.95552 1.21911 1.00490 0.95750 0.98224 1.20687 0.96807 0.94381 0.85146 1.42737 1.69234 1.24915 1.03800 1.19072 1.27459 0.97806 0.92919 0.92560 1.25572 1.01157 0.98816 1.00068 1.69888 1.48006 1.25294 1.20153 0.85338 0.78099 0.79183 0.78722 1.19578 1.21942 1.18348 1.21306 0.87604 0.86649 0.74847 1.90704 1.16465 1.88062 1.51561 1.21394 0.98005 0.90586 1.02326 1.22453 0.99872 1.00903 0.95594 1.22789 0.89924 0.84814 1.04191 1.87922 1.49498 1.52390 1.42670 1.22651 0.93728 0.96453 0.88269 1.21996 0.97914 0.94707 1.02856 0.89882 0.89820 0.88830 0.87457 0.91973 0.93951 0.90322 0.94318 0.96766 0.80170 0.93148 0.86009 0.92412 0.86800 0.90797 0.87034 0.91075 0.87972 0.91151 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 8.81 127.77 1.13 1.73 16 2 N -0.61 -12.26 2.87 -846.75 -2.43 -14.69 16 3 C 0.12 3.03 5.41 86.38 0.47 3.50 16 4 C -0.12 -3.82 5.65 30.59 0.17 -3.64 16 5 C 0.16 6.19 6.26 86.38 0.54 6.73 16 6 N -0.76 -37.57 5.41 -343.46 -1.86 -39.42 16 7 C -0.24 -14.42 10.47 84.04 0.88 -13.54 16 8 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 9 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 10 N -0.98 -64.47 13.97 21.65 0.30 -64.16 16 11 Si 0.96 46.61 27.74 68.60 1.90 48.52 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 13 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 14 H -0.26 -11.60 6.52 99.48 0.65 -10.95 16 15 C 0.51 12.39 7.08 87.66 0.62 13.01 16 16 O -0.59 -20.72 15.55 -3.03 -0.05 -20.77 16 17 C -0.10 -1.62 1.80 -11.42 -0.02 -1.64 16 18 C -0.15 -1.66 5.03 30.68 0.15 -1.51 16 19 C 0.06 0.55 6.84 72.01 0.49 1.05 16 20 O -0.41 -6.47 10.76 -148.98 -1.60 -8.07 16 21 C 0.07 0.89 6.84 72.01 0.49 1.39 16 22 C -0.14 -2.53 4.73 30.68 0.15 -2.38 16 23 H 0.08 0.46 7.02 -2.39 -0.02 0.45 16 24 H 0.08 0.74 8.07 -2.39 -0.02 0.72 16 25 H 0.09 0.52 5.99 -2.38 -0.01 0.50 16 26 H 0.11 2.03 8.07 -2.39 -0.02 2.01 16 27 H 0.06 1.84 7.42 -2.39 -0.02 1.82 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.37 17.15 5.53 -92.71 -0.51 16.63 16 33 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 34 H 0.12 1.34 7.40 -2.38 -0.02 1.32 16 35 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.11 0.65 4.68 -2.38 -0.01 0.64 16 37 H 0.07 0.40 8.14 -2.38 -0.02 0.39 16 38 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.05 1.27 8.02 -2.39 -0.02 1.25 16 Total: -1.00 -80.68 331.45 2.23 -78.46 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.43 Total: 18.92 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 5.54 Total: 1.23 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -3.99 Total: -118.28 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.65 Total: -28.84 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.90 Total: 48.52 kcal Total: -80.68 2.23 -78.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699485403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.178 kcal (2) G-P(sol) polarization free energy of solvation -80.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds