Wall clock time and date at job start Mon Mar 30 2020 01:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 C 1.52995 * 109.47427 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47393 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99889 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00380 * 359.97438 * 7 6 5 9 9 C 1.38809 * 119.99703 * 180.02562 * 7 6 5 10 10 N 1.31621 * 120.00062 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 120.00154 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.46957 * 90.00074 * 11 9 7 13 13 H 1.48505 * 109.47109 * 210.00223 * 11 9 7 14 14 H 1.48502 * 109.46820 * 330.00060 * 11 9 7 15 15 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 2 1 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 2 1 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 2 19 19 H 1.09005 * 110.43601 * 303.90832 * 18 17 15 20 20 C 1.54808 * 110.49134 * 181.22132 * 18 17 15 21 21 C 1.54992 * 102.09166 * 220.44193 * 20 18 17 22 22 O 1.44385 * 103.49330 * 37.02331 * 21 20 18 23 23 C 1.43746 * 106.96998 * 319.93936 * 22 21 20 24 24 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 25 25 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 26 26 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 27 27 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 28 28 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 29 29 H 1.08999 * 109.47707 * 300.00330 * 4 3 2 30 30 H 1.09005 * 109.46685 * 60.00344 * 4 3 2 31 31 H 1.09006 * 109.47343 * 300.00688 * 5 4 3 32 32 H 1.09005 * 109.46868 * 60.00504 * 5 4 3 33 33 H 0.96998 * 119.99783 * 0.02562 * 6 5 4 34 34 H 0.96997 * 119.99898 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46965 * 299.72211 * 17 15 2 36 36 H 1.08994 * 109.46990 * 59.72065 * 17 15 2 37 37 H 1.09002 * 110.90335 * 338.63423 * 20 18 17 38 38 H 1.08993 * 110.90830 * 102.24019 * 20 18 17 39 39 H 1.08997 * 110.61996 * 278.52108 * 21 20 18 40 40 H 1.09009 * 110.61576 * 155.52214 * 21 20 18 41 41 H 1.09002 * 109.87734 * 267.08690 * 23 22 21 42 42 H 1.09002 * 110.00170 * 146.01072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2169 3.0357 -1.4426 6 7 3.4606 3.4589 -2.8239 7 6 4.1336 4.6249 -3.0741 8 1 4.4843 5.2328 -2.2533 9 6 4.3640 5.0261 -4.3828 10 7 5.0104 6.1471 -4.6234 11 14 3.7567 3.9750 -5.8026 12 1 2.3831 4.3960 -6.1780 13 1 4.6623 4.1452 -6.9673 14 1 3.7422 2.5481 -5.3913 15 6 2.1390 -1.1672 0.0005 16 8 3.3518 -1.1671 0.0010 17 6 1.3855 -2.4723 -0.0053 18 6 2.3798 -3.6352 -0.0104 19 1 3.0603 -3.5504 -0.8577 20 6 1.6301 -4.9891 -0.0473 21 6 2.4658 -5.8499 0.9339 22 8 2.8419 -4.9138 1.9669 23 6 3.1686 -3.6761 1.3128 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5138 27 1 1.6083 2.0285 0.5137 28 1 3.1499 1.1385 0.5139 29 1 3.0417 0.9508 -1.9563 30 1 1.5001 1.8406 -1.9564 31 1 2.6274 3.7952 -0.9289 32 1 4.1693 2.9059 -0.9286 33 1 3.1453 2.9131 -3.5611 34 1 5.1718 6.4272 -5.5379 35 1 0.7588 -2.5340 0.8844 36 1 0.7590 -2.5261 -0.8955 37 1 0.6061 -4.8765 0.3092 38 1 1.6467 -5.4157 -1.0502 39 1 3.3500 -6.2489 0.4371 40 1 1.8604 -6.6561 1.3485 41 1 4.2384 -3.6363 1.1080 42 1 2.8804 -2.8343 1.9424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699497584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:26 Heat of formation + Delta-G solvation = -74.807035 kcal Electronic energy + Delta-G solvation = -20748.396683 eV Core-core repulsion = 17535.711738 eV Total energy + Delta-G solvation = -3212.684946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48927 -39.19051 -36.33618 -34.99783 -33.83084 -32.25850 -30.60379 -29.94687 -27.50265 -27.10864 -25.03798 -23.08063 -22.39377 -21.11052 -20.83497 -19.13495 -17.53935 -17.26287 -17.02731 -16.31690 -16.03242 -15.57373 -15.12078 -14.62934 -14.49215 -14.02018 -13.80745 -13.49275 -13.15385 -12.98950 -12.85354 -12.62697 -12.57614 -12.14898 -12.08385 -11.91170 -11.55714 -11.25596 -11.17363 -11.02126 -10.92034 -10.82469 -10.50892 -10.13394 -9.94737 -9.79051 -9.57630 -8.87627 -8.77299 -7.21138 -5.74960 -3.10286 2.50165 2.84767 3.38498 3.41714 3.45986 3.68940 4.06702 4.28216 4.48293 4.55874 4.60930 4.83649 4.85667 4.90907 5.03273 5.03779 5.15571 5.20087 5.27043 5.34927 5.37817 5.42286 5.51853 5.53894 5.54412 5.59258 5.75276 5.79550 5.84600 5.91911 6.02619 6.24730 6.42178 6.62234 6.75464 6.78162 7.23543 8.01429 8.05344 8.44340 9.23312 9.95865 10.16028 11.43588 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029295 B = 0.003191 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.564220 B = 8773.722184 C = 9021.707519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.617 5.617 3 C 0.118 3.882 4 C -0.143 4.143 5 C 0.160 3.840 6 N -0.757 5.757 7 C -0.243 4.243 8 H 0.090 0.910 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.508 3.492 16 O -0.532 6.532 17 C -0.131 4.131 18 C -0.108 4.108 19 H 0.092 0.908 20 C -0.152 4.152 21 C 0.046 3.954 22 O -0.384 6.384 23 C 0.060 3.940 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.094 -23.199 11.635 29.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.351 5.351 3 C -0.005 4.005 4 C -0.181 4.181 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.193 4.193 10 N -0.583 5.583 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.296 3.704 16 O -0.409 6.409 17 C -0.171 4.171 18 C -0.127 4.127 19 H 0.111 0.889 20 C -0.190 4.190 21 C -0.031 4.031 22 O -0.303 6.303 23 C -0.017 4.017 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.312 -23.005 11.914 28.684 hybrid contribution -0.541 -0.448 -1.495 1.652 sum -12.853 -23.454 10.419 28.703 Atomic orbital electron populations 1.21830 0.79584 1.03497 1.01825 1.47940 1.07024 1.06455 1.73632 1.21480 0.97714 0.83586 0.97676 1.22102 1.00909 0.98964 0.96174 1.20521 0.96649 0.91923 0.87649 1.42707 1.69691 1.26229 1.01617 1.19081 1.27796 0.96810 0.93633 0.89171 1.24680 1.00495 0.97209 0.96911 1.69704 1.46175 1.22992 1.19451 0.86522 0.78413 0.80298 0.83179 1.21102 1.21663 1.20392 1.20675 0.88207 0.85372 0.76187 1.90736 1.13797 1.87294 1.49046 1.21790 0.98966 0.91845 1.04483 1.22328 0.96984 0.93395 0.99954 0.88914 1.23227 1.00076 0.94899 1.00776 1.23529 0.97771 0.92887 0.88898 1.88871 1.88327 1.22300 1.30783 1.23177 0.99288 0.86639 0.92596 0.92466 0.90569 0.91147 0.90340 0.89567 0.91683 0.92115 0.95510 0.95370 0.80737 0.93071 0.88632 0.88553 0.90259 0.89974 0.92152 0.89062 0.91722 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.25 59.85 0.61 1.14 16 2 N -0.62 -6.73 2.87 -181.57 -0.52 -7.25 16 3 C 0.12 1.51 5.41 -4.04 -0.02 1.49 16 4 C -0.14 -2.26 5.65 -26.73 -0.15 -2.41 16 5 C 0.16 3.20 6.26 -4.04 -0.03 3.17 16 6 N -0.76 -18.85 5.41 -59.91 -0.32 -19.17 16 7 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 10 N -0.94 -30.02 13.97 55.49 0.78 -29.24 16 11 Si 0.89 22.67 27.74 -169.99 -4.71 17.96 16 12 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 14 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 15 C 0.51 6.06 7.18 -10.98 -0.08 5.98 16 16 O -0.53 -8.47 14.65 5.55 0.08 -8.39 16 17 C -0.13 -1.05 3.49 -27.88 -0.10 -1.15 16 18 C -0.11 -0.95 2.67 -89.10 -0.24 -1.19 16 19 H 0.09 0.93 8.02 -51.93 -0.42 0.52 16 20 C -0.15 -0.98 6.71 -24.73 -0.17 -1.15 16 21 C 0.05 0.35 7.72 38.21 0.29 0.64 16 22 O -0.38 -4.22 11.52 -35.23 -0.41 -4.63 16 23 C 0.06 0.64 6.31 37.73 0.24 0.88 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 26 H 0.07 0.36 6.43 -51.93 -0.33 0.03 16 27 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 28 H 0.09 1.24 7.42 -51.93 -0.39 0.85 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.36 8.76 5.53 -40.82 -0.23 8.53 16 34 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 35 H 0.10 0.62 8.11 -51.93 -0.42 0.19 16 36 H 0.10 0.60 7.40 -51.93 -0.38 0.21 16 37 H 0.08 0.43 7.87 -51.93 -0.41 0.03 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.92 7.25 -51.93 -0.38 0.54 16 LS Contribution 338.33 15.07 5.10 5.10 Total: -1.00 -35.48 338.33 -7.08 -42.56 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.19 Total: 2.97 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 0.11 Total: 0.09 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.07 Total: -55.66 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.32 Total: -13.02 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.48 -7.08 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699497584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.242 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds