Wall clock time and date at job start Mon Mar 30 2020 01:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 C 1.52995 * 109.47427 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47393 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99889 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00380 * 359.97438 * 7 6 5 9 9 C 1.38809 * 119.99703 * 180.02562 * 7 6 5 10 10 N 1.31621 * 120.00062 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 120.00154 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.46957 * 90.00074 * 11 9 7 13 13 H 1.48505 * 109.47109 * 210.00223 * 11 9 7 14 14 H 1.48502 * 109.46820 * 330.00060 * 11 9 7 15 15 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 2 1 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 2 1 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 2 19 19 H 1.09005 * 110.43601 * 303.90832 * 18 17 15 20 20 C 1.54808 * 110.49134 * 181.22132 * 18 17 15 21 21 C 1.54992 * 102.09166 * 220.44193 * 20 18 17 22 22 O 1.44385 * 103.49330 * 37.02331 * 21 20 18 23 23 C 1.43746 * 106.96998 * 319.93936 * 22 21 20 24 24 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 25 25 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 26 26 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 27 27 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 28 28 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 29 29 H 1.08999 * 109.47707 * 300.00330 * 4 3 2 30 30 H 1.09005 * 109.46685 * 60.00344 * 4 3 2 31 31 H 1.09006 * 109.47343 * 300.00688 * 5 4 3 32 32 H 1.09005 * 109.46868 * 60.00504 * 5 4 3 33 33 H 0.96998 * 119.99783 * 0.02562 * 6 5 4 34 34 H 0.96997 * 119.99898 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46965 * 299.72211 * 17 15 2 36 36 H 1.08994 * 109.46990 * 59.72065 * 17 15 2 37 37 H 1.09002 * 110.90335 * 338.63423 * 20 18 17 38 38 H 1.08993 * 110.90830 * 102.24019 * 20 18 17 39 39 H 1.08997 * 110.61996 * 278.52108 * 21 20 18 40 40 H 1.09009 * 110.61576 * 155.52214 * 21 20 18 41 41 H 1.09002 * 109.87734 * 267.08690 * 23 22 21 42 42 H 1.09002 * 110.00170 * 146.01072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2169 3.0357 -1.4426 6 7 3.4606 3.4589 -2.8239 7 6 4.1336 4.6249 -3.0741 8 1 4.4843 5.2328 -2.2533 9 6 4.3640 5.0261 -4.3828 10 7 5.0104 6.1471 -4.6234 11 14 3.7567 3.9750 -5.8026 12 1 2.3831 4.3960 -6.1780 13 1 4.6623 4.1452 -6.9673 14 1 3.7422 2.5481 -5.3913 15 6 2.1390 -1.1672 0.0005 16 8 3.3518 -1.1671 0.0010 17 6 1.3855 -2.4723 -0.0053 18 6 2.3798 -3.6352 -0.0104 19 1 3.0603 -3.5504 -0.8577 20 6 1.6301 -4.9891 -0.0473 21 6 2.4658 -5.8499 0.9339 22 8 2.8419 -4.9138 1.9669 23 6 3.1686 -3.6761 1.3128 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5138 27 1 1.6083 2.0285 0.5137 28 1 3.1499 1.1385 0.5139 29 1 3.0417 0.9508 -1.9563 30 1 1.5001 1.8406 -1.9564 31 1 2.6274 3.7952 -0.9289 32 1 4.1693 2.9059 -0.9286 33 1 3.1453 2.9131 -3.5611 34 1 5.1718 6.4272 -5.5379 35 1 0.7588 -2.5340 0.8844 36 1 0.7590 -2.5261 -0.8955 37 1 0.6061 -4.8765 0.3092 38 1 1.6467 -5.4157 -1.0502 39 1 3.3500 -6.2489 0.4371 40 1 1.8604 -6.6561 1.3485 41 1 4.2384 -3.6363 1.1080 42 1 2.8804 -2.8343 1.9424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699497584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:26 Heat of formation + Delta-G solvation = -100.449341 kcal Electronic energy + Delta-G solvation = -20749.508617 eV Core-core repulsion = 17535.711738 eV Total energy + Delta-G solvation = -3213.796879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31240 -39.97248 -37.65671 -36.46969 -34.65256 -34.03997 -32.17110 -30.75523 -28.47832 -27.90040 -26.37820 -24.29553 -23.51854 -22.68902 -21.59448 -19.98086 -19.67723 -18.08635 -17.74825 -17.21496 -16.84372 -16.63274 -16.27160 -15.94958 -15.89976 -15.62784 -14.91358 -14.61711 -14.41734 -13.84767 -13.81287 -13.67032 -13.60187 -13.28941 -13.09673 -12.84150 -12.74982 -12.55528 -12.47349 -12.15655 -12.07641 -11.88853 -11.85626 -11.81190 -11.61769 -11.01346 -10.83652 -10.61237 -9.66455 -9.35428 -8.06775 -5.41375 1.34355 1.38828 1.46258 1.63594 2.03499 2.45148 3.02692 3.24033 3.40385 3.57458 3.66533 3.78975 3.90768 4.05549 4.19530 4.26468 4.33245 4.37973 4.41148 4.44844 4.57343 4.58503 4.69140 4.70767 4.77801 4.83251 4.87426 4.89737 4.95377 5.00965 5.06918 5.22174 5.23221 5.25272 5.54749 5.70783 5.92448 6.17359 6.42346 7.02943 7.19490 7.78682 7.98309 9.14782 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029295 B = 0.003191 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.564220 B = 8773.722184 C = 9021.707519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.617 5.617 3 C 0.124 3.876 4 C -0.124 4.124 5 C 0.156 3.844 6 N -0.761 5.761 7 C -0.241 4.241 8 H 0.056 0.944 9 C -0.065 4.065 10 N -0.983 5.983 11 Si 0.961 3.039 12 H -0.271 1.271 13 H -0.293 1.293 14 H -0.258 1.258 15 C 0.498 3.502 16 O -0.584 6.584 17 C -0.120 4.120 18 C -0.108 4.108 19 H 0.074 0.926 20 C -0.140 4.140 21 C 0.035 3.965 22 O -0.405 6.405 23 C 0.060 3.940 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.015 0.985 33 H 0.365 0.635 34 H 0.260 0.740 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.112 0.888 41 H 0.041 0.959 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.419 -25.574 11.158 32.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.349 5.349 3 C 0.000 4.000 4 C -0.163 4.163 5 C 0.030 3.970 6 N -0.407 5.407 7 C -0.372 4.372 8 H 0.074 0.926 9 C -0.257 4.257 10 N -0.634 5.634 11 Si 0.787 3.213 12 H -0.196 1.196 13 H -0.220 1.220 14 H -0.183 1.183 15 C 0.287 3.713 16 O -0.464 6.464 17 C -0.159 4.159 18 C -0.127 4.127 19 H 0.093 0.907 20 C -0.177 4.177 21 C -0.040 4.040 22 O -0.325 6.325 23 C -0.017 4.017 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.198 0.802 34 H 0.068 0.932 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.130 0.870 41 H 0.059 0.941 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.699 -25.415 11.474 32.001 hybrid contribution 0.538 0.321 -1.223 1.374 sum -15.161 -25.094 10.251 31.059 Atomic orbital electron populations 1.22145 0.76671 1.04988 1.03556 1.48047 1.08752 1.05274 1.72796 1.21275 0.97811 0.85469 0.95459 1.21905 1.00406 0.95723 0.98284 1.20692 0.96811 0.94426 0.85117 1.42738 1.69196 1.24936 1.03812 1.19067 1.27457 0.97791 0.92902 0.92603 1.25580 1.01189 0.98824 1.00091 1.69891 1.48065 1.25260 1.20135 0.85330 0.78059 0.79213 0.78687 1.19638 1.21959 1.18260 1.21474 0.87894 0.86836 0.75056 1.90720 1.16241 1.88069 1.51404 1.21817 0.98524 0.88747 1.06858 1.22293 0.97115 0.95451 0.97835 0.90732 1.23211 1.00314 0.92738 1.01458 1.23799 0.98449 0.93035 0.88766 1.88844 1.88475 1.22817 1.32367 1.23073 0.98398 0.86538 0.93642 0.90605 0.90152 0.88672 0.87859 0.91829 0.93770 0.90486 0.94483 0.96723 0.80155 0.93167 0.86272 0.85672 0.88317 0.88267 0.92197 0.87019 0.94070 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.25 127.77 1.31 1.97 16 2 N -0.62 -11.98 2.87 -846.74 -2.43 -14.41 16 3 C 0.12 3.01 5.41 86.38 0.47 3.47 16 4 C -0.12 -3.77 5.65 30.59 0.17 -3.60 16 5 C 0.16 6.18 6.26 86.38 0.54 6.72 16 6 N -0.76 -37.53 5.41 -343.45 -1.86 -39.38 16 7 C -0.24 -14.40 10.47 84.03 0.88 -13.52 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 9 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 10 N -0.98 -64.48 13.97 21.65 0.30 -64.18 16 11 Si 0.96 46.57 27.74 68.60 1.90 48.47 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 14 H -0.26 -11.51 6.52 99.48 0.65 -10.86 16 15 C 0.50 11.19 7.18 87.66 0.63 11.82 16 16 O -0.58 -19.00 14.65 -3.04 -0.04 -19.05 16 17 C -0.12 -1.56 3.49 29.85 0.10 -1.45 16 18 C -0.11 -1.75 2.67 -9.81 -0.03 -1.77 16 19 H 0.07 1.48 8.02 -2.38 -0.02 1.46 16 20 C -0.14 -1.38 6.71 31.89 0.21 -1.16 16 21 C 0.04 0.47 7.72 72.66 0.56 1.03 16 22 O -0.41 -8.69 11.52 -148.98 -1.72 -10.41 16 23 C 0.06 1.31 6.31 72.35 0.46 1.77 16 24 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.08 0.76 8.07 -2.39 -0.02 0.74 16 26 H 0.09 0.47 6.43 -2.39 -0.02 0.46 16 27 H 0.10 2.00 8.07 -2.39 -0.02 1.98 16 28 H 0.06 1.85 7.42 -2.38 -0.02 1.83 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.37 17.11 5.53 -92.71 -0.51 16.60 16 34 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 35 H 0.12 1.03 8.11 -2.38 -0.02 1.02 16 36 H 0.13 0.95 7.40 -2.39 -0.02 0.93 16 37 H 0.10 0.63 7.87 -2.39 -0.02 0.61 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.66 7.25 -2.39 -0.02 1.64 16 Total: -1.00 -80.08 338.33 2.35 -77.73 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.42 Total: 19.47 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 5.78 Total: 1.76 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -3.99 Total: -117.98 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -1.76 Total: -29.45 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.90 Total: 48.47 kcal Total: -80.08 2.35 -77.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699497584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.719 kcal (2) G-P(sol) polarization free energy of solvation -80.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds