Wall clock time and date at job start Mon Mar 30 2020 01:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42903 * 109.46749 * 2 1 4 4 C 1.42903 * 113.99573 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.46822 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00493 * 0.02562 * 5 4 3 7 7 N 1.34787 * 120.00093 * 180.02562 * 5 4 3 8 8 C 1.47425 * 125.64364 * 359.95920 * 7 5 4 9 9 C 1.54907 * 104.83095 * 204.16365 * 8 7 5 10 10 H 1.09002 * 111.00536 * 204.92020 * 9 8 7 11 11 C 1.52997 * 111.00532 * 81.06543 * 9 8 7 12 12 C 1.55161 * 101.57934 * 322.99197 * 9 8 7 13 13 H 1.08998 * 110.87473 * 277.06526 * 12 9 8 14 14 C 1.53004 * 110.72010 * 153.86469 * 12 9 8 15 15 N 1.46499 * 109.47198 * 180.02562 * 14 12 9 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 60.00435 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47132 * 300.00314 * 20 18 16 24 24 C 1.47013 * 125.65061 * 180.02562 * 7 5 4 25 25 H 1.09002 * 109.46960 * 60.00262 * 1 2 3 26 26 H 1.08996 * 109.47112 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47465 * 300.00086 * 1 2 3 28 28 H 1.08997 * 109.47465 * 239.99914 * 2 1 3 29 29 H 1.09002 * 109.46960 * 119.99738 * 2 1 3 30 30 H 1.09000 * 109.46738 * 60.00646 * 4 3 2 31 31 H 1.08996 * 109.47242 * 300.00537 * 4 3 2 32 32 H 1.08998 * 110.37003 * 323.00365 * 8 7 5 33 33 H 1.09004 * 110.36458 * 85.32451 * 8 7 5 34 34 H 1.09004 * 109.47045 * 307.80694 * 11 9 8 35 35 H 1.08997 * 109.47327 * 67.80513 * 11 9 8 36 36 H 1.08998 * 109.47181 * 187.81040 * 11 9 8 37 37 H 1.09009 * 109.46730 * 60.02126 * 14 12 9 38 38 H 1.08998 * 109.46846 * 300.02670 * 14 12 9 39 39 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 40 40 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.88176 * 59.48693 * 24 7 5 42 42 H 1.09007 * 110.01363 * 298.39519 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9610 3.7729 0.0016 7 7 5.1210 3.2664 0.0013 8 6 6.2619 2.3327 0.0017 9 6 7.4339 3.1391 0.6146 10 1 8.3947 2.7464 0.2815 11 6 7.3498 3.1539 2.1422 12 6 7.1783 4.5534 0.0298 13 1 7.5879 4.6373 -0.9768 14 6 7.7665 5.6311 0.9429 15 7 7.5095 6.9531 0.3662 16 6 7.9515 8.0783 1.0096 17 1 8.4855 7.9913 1.9443 18 6 7.7131 9.3307 0.4603 19 7 7.0619 9.4366 -0.6786 20 14 8.3153 10.8656 1.3382 21 1 9.7929 10.8096 1.4759 22 1 7.9362 12.0666 0.5516 23 1 7.6952 10.9407 2.6855 24 6 5.6380 4.6426 0.0023 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8935 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8340 0.9766 -0.8892 31 1 3.8333 0.9767 0.8907 32 1 6.0386 1.4610 0.6168 33 1 6.5028 2.0278 -1.0167 34 1 6.3571 3.4844 2.4482 35 1 7.5328 2.1502 2.5259 36 1 8.0992 3.8376 2.5408 37 1 8.8416 5.4790 1.0386 38 1 7.3015 5.5672 1.9266 39 1 7.0302 7.0312 -0.4734 40 1 6.8951 10.3118 -1.0622 41 1 5.2813 5.1719 0.8859 42 1 5.3131 5.1639 -0.8982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699958541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:09 Heat of formation + Delta-G solvation = -72.049476 kcal Electronic energy + Delta-G solvation = -21069.968129 eV Core-core repulsion = 17857.402760 eV Total energy + Delta-G solvation = -3212.565369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.22329 -38.51112 -37.31559 -34.66407 -32.79613 -31.75187 -31.14752 -29.42045 -27.72449 -26.64668 -24.99806 -23.12487 -23.01419 -21.66493 -19.40578 -19.19373 -17.41710 -17.01316 -16.84544 -16.48885 -15.82779 -15.35870 -14.90623 -14.53685 -13.99905 -13.74201 -13.54169 -13.23109 -13.14072 -12.85451 -12.68647 -12.50318 -12.26614 -12.11307 -11.86951 -11.64493 -11.58736 -11.45595 -11.02563 -10.81136 -10.56128 -10.45764 -10.32487 -9.98651 -9.94073 -9.68658 -9.63471 -8.84767 -8.51750 -6.90334 -5.73428 -3.02745 2.66855 2.67436 3.46505 3.50712 3.52062 3.72079 4.39582 4.47549 4.61799 4.73592 4.79040 4.84881 4.90106 4.97957 5.02656 5.05746 5.28612 5.36295 5.38664 5.45028 5.53597 5.61823 5.63235 5.77777 5.83874 5.86551 5.99277 6.05847 6.17912 6.27836 6.36537 6.39200 6.46227 6.69277 6.83681 6.86273 7.57498 7.71475 8.25443 8.44998 9.56025 10.13083 10.47244 11.49275 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027200 B = 0.003610 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.167178 B = 7754.138074 C = 8435.885593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.051 3.949 5 C 0.524 3.476 6 O -0.517 6.517 7 N -0.616 5.616 8 C 0.100 3.900 9 C -0.097 4.097 10 H 0.091 0.909 11 C -0.144 4.144 12 C -0.101 4.101 13 H 0.086 0.914 14 C 0.163 3.837 15 N -0.733 5.733 16 C -0.242 4.242 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.119 3.881 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.023 0.977 38 H 0.026 0.974 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.076 0.924 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 -23.483 1.368 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.029 4.029 5 C 0.311 3.689 6 O -0.391 6.391 7 N -0.353 5.353 8 C -0.023 4.023 9 C -0.117 4.117 10 H 0.109 0.891 11 C -0.201 4.201 12 C -0.120 4.120 13 H 0.104 0.896 14 C 0.036 3.964 15 N -0.378 5.378 16 C -0.373 4.373 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.002 4.002 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.044 0.956 39 H 0.217 0.783 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.578 -22.753 1.482 23.256 hybrid contribution 0.444 0.626 0.095 0.773 sum -4.134 -22.127 1.577 22.565 Atomic orbital electron populations 1.21732 0.93392 1.02153 1.03583 1.22541 0.96027 0.83450 1.00077 1.88040 1.18614 1.26240 1.95391 1.22149 0.83726 0.94752 1.02225 1.19816 0.81217 0.90393 0.77499 1.90765 1.48396 1.51796 1.48189 1.48484 1.04424 1.08872 1.73490 1.22466 0.86329 0.92791 1.00695 1.22331 0.97653 0.95332 0.96379 0.89059 1.21793 1.02880 1.01382 0.94078 1.22494 0.93900 0.94657 1.00991 0.89615 1.20714 0.96680 0.84700 0.94343 1.42372 1.68522 0.99851 1.27029 1.19154 1.29541 0.84965 1.03621 0.91253 1.24749 1.01141 0.97575 0.97432 1.69652 1.45757 1.23232 1.19408 0.86266 0.78287 0.82916 0.78687 1.21299 1.21691 1.21265 1.22023 0.93396 0.81563 1.03231 0.91638 0.91022 0.91632 0.93249 0.93253 0.90493 0.90504 0.90872 0.91169 0.92414 0.93000 0.91252 0.95937 0.95617 0.78255 0.93423 0.90562 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.36 -4.81 9.88 -55.14 -0.54 -5.36 16 4 C 0.05 0.57 5.42 36.00 0.20 0.77 16 5 C 0.52 8.25 7.93 -10.98 -0.09 8.17 16 6 O -0.52 -10.86 16.83 -14.36 -0.24 -11.10 16 7 N -0.62 -8.75 3.31 -170.53 -0.56 -9.32 16 8 C 0.10 1.00 6.15 -2.53 -0.02 0.98 16 9 C -0.10 -1.08 3.54 -88.47 -0.31 -1.39 16 10 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 11 C -0.14 -1.60 8.13 37.16 0.30 -1.30 16 12 C -0.10 -1.55 2.88 -88.78 -0.26 -1.80 16 13 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.16 3.15 4.52 -4.04 -0.02 3.13 16 15 N -0.73 -18.50 5.45 -59.90 -0.33 -18.82 16 16 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 20 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C 0.12 2.04 5.83 -3.07 -0.02 2.02 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.66 7.85 -51.93 -0.41 0.25 16 32 H 0.07 0.55 7.39 -51.93 -0.38 0.17 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.74 7.91 -51.93 -0.41 0.33 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.83 6.76 -51.93 -0.35 0.48 16 37 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 38 H 0.03 0.51 6.67 -51.93 -0.35 0.16 16 39 H 0.38 10.25 7.52 -40.82 -0.31 9.94 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.08 1.50 7.76 -51.93 -0.40 1.10 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -34.99 341.93 -7.88 -42.87 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.23 Total: 3.76 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 0.17 Total: 3.07 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.17 Total: -56.07 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.79 Total: -16.46 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.99 -7.88 -42.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699958541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.183 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds