Wall clock time and date at job start Mon Mar 30 2020 01:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42903 * 109.46749 * 2 1 4 4 C 1.42903 * 113.99573 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.46822 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00493 * 0.02562 * 5 4 3 7 7 N 1.34787 * 120.00093 * 180.02562 * 5 4 3 8 8 C 1.47425 * 125.64364 * 359.95920 * 7 5 4 9 9 C 1.54907 * 104.83095 * 204.16365 * 8 7 5 10 10 H 1.09002 * 111.00536 * 204.92020 * 9 8 7 11 11 C 1.52997 * 111.00532 * 81.06543 * 9 8 7 12 12 C 1.55161 * 101.57934 * 322.99197 * 9 8 7 13 13 H 1.08998 * 110.87473 * 277.06526 * 12 9 8 14 14 C 1.53004 * 110.72010 * 153.86469 * 12 9 8 15 15 N 1.46499 * 109.47198 * 180.02562 * 14 12 9 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 60.00435 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47132 * 300.00314 * 20 18 16 24 24 C 1.47013 * 125.65061 * 180.02562 * 7 5 4 25 25 H 1.09002 * 109.46960 * 60.00262 * 1 2 3 26 26 H 1.08996 * 109.47112 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47465 * 300.00086 * 1 2 3 28 28 H 1.08997 * 109.47465 * 239.99914 * 2 1 3 29 29 H 1.09002 * 109.46960 * 119.99738 * 2 1 3 30 30 H 1.09000 * 109.46738 * 60.00646 * 4 3 2 31 31 H 1.08996 * 109.47242 * 300.00537 * 4 3 2 32 32 H 1.08998 * 110.37003 * 323.00365 * 8 7 5 33 33 H 1.09004 * 110.36458 * 85.32451 * 8 7 5 34 34 H 1.09004 * 109.47045 * 307.80694 * 11 9 8 35 35 H 1.08997 * 109.47327 * 67.80513 * 11 9 8 36 36 H 1.08998 * 109.47181 * 187.81040 * 11 9 8 37 37 H 1.09009 * 109.46730 * 60.02126 * 14 12 9 38 38 H 1.08998 * 109.46846 * 300.02670 * 14 12 9 39 39 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 40 40 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.88176 * 59.48693 * 24 7 5 42 42 H 1.09007 * 110.01363 * 298.39519 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9610 3.7729 0.0016 7 7 5.1210 3.2664 0.0013 8 6 6.2619 2.3327 0.0017 9 6 7.4339 3.1391 0.6146 10 1 8.3947 2.7464 0.2815 11 6 7.3498 3.1539 2.1422 12 6 7.1783 4.5534 0.0298 13 1 7.5879 4.6373 -0.9768 14 6 7.7665 5.6311 0.9429 15 7 7.5095 6.9531 0.3662 16 6 7.9515 8.0783 1.0096 17 1 8.4855 7.9913 1.9443 18 6 7.7131 9.3307 0.4603 19 7 7.0619 9.4366 -0.6786 20 14 8.3153 10.8656 1.3382 21 1 9.7929 10.8096 1.4759 22 1 7.9362 12.0666 0.5516 23 1 7.6952 10.9407 2.6855 24 6 5.6380 4.6426 0.0023 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8935 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8340 0.9766 -0.8892 31 1 3.8333 0.9767 0.8907 32 1 6.0386 1.4610 0.6168 33 1 6.5028 2.0278 -1.0167 34 1 6.3571 3.4844 2.4482 35 1 7.5328 2.1502 2.5259 36 1 8.0992 3.8376 2.5408 37 1 8.8416 5.4790 1.0386 38 1 7.3015 5.5672 1.9266 39 1 7.0302 7.0312 -0.4734 40 1 6.8951 10.3118 -1.0622 41 1 5.2813 5.1719 0.8859 42 1 5.3131 5.1639 -0.8982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699958541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:09 Heat of formation + Delta-G solvation = -96.881276 kcal Electronic energy + Delta-G solvation = -21071.044917 eV Core-core repulsion = 17857.402760 eV Total energy + Delta-G solvation = -3213.642157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.37747 -39.55292 -38.38351 -36.45926 -34.27457 -32.81266 -32.44002 -30.80363 -28.92329 -27.57055 -26.63147 -24.80221 -23.67518 -23.00523 -20.52949 -20.46436 -19.09067 -18.30896 -17.82092 -17.42361 -16.91957 -16.64845 -16.45856 -15.77392 -15.35584 -15.31380 -14.73897 -14.61495 -14.22071 -13.93726 -13.75620 -13.71430 -13.26193 -13.22219 -13.06550 -12.95856 -12.78510 -12.64405 -12.32760 -12.23037 -12.16614 -11.90462 -11.65540 -11.51449 -11.43707 -10.94973 -10.88063 -10.66506 -9.72600 -9.00460 -7.95788 -5.24962 1.45373 1.49277 1.50461 1.55265 1.65012 2.55175 2.90820 3.35709 3.40664 3.50967 3.75513 3.81787 4.11172 4.15571 4.18287 4.25603 4.28484 4.34090 4.35737 4.51391 4.53407 4.60708 4.68083 4.79584 4.82053 4.87211 4.97794 5.03185 5.03294 5.10026 5.23446 5.25232 5.27374 5.32672 5.48509 5.53046 6.12457 6.26224 6.49235 7.08493 7.32003 8.08880 8.30241 9.27813 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027200 B = 0.003610 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.167178 B = 7754.138074 C = 8435.885593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.060 3.940 5 C 0.512 3.488 6 O -0.588 6.588 7 N -0.612 5.612 8 C 0.098 3.902 9 C -0.086 4.086 10 H 0.126 0.874 11 C -0.143 4.143 12 C -0.093 4.093 13 H 0.087 0.913 14 C 0.163 3.837 15 N -0.749 5.749 16 C -0.245 4.245 17 H 0.078 0.922 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.273 1.273 22 H -0.297 1.297 23 H -0.280 1.280 24 C 0.125 3.875 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.032 0.968 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.035 0.965 38 H 0.022 0.978 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.037 0.963 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 -26.989 2.086 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.328 6.328 4 C -0.019 4.019 5 C 0.301 3.699 6 O -0.468 6.468 7 N -0.346 5.346 8 C -0.023 4.023 9 C -0.105 4.105 10 H 0.144 0.856 11 C -0.201 4.201 12 C -0.112 4.112 13 H 0.106 0.894 14 C 0.037 3.963 15 N -0.391 5.391 16 C -0.377 4.377 17 H 0.096 0.904 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.199 1.199 22 H -0.223 1.223 23 H -0.206 1.206 24 C 0.002 3.998 25 H 0.070 0.930 26 H 0.118 0.882 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.040 0.960 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.828 -26.341 2.234 26.587 hybrid contribution -0.090 1.642 -0.087 1.646 sum -2.919 -24.700 2.147 24.964 Atomic orbital electron populations 1.21797 0.93538 1.03535 1.02228 1.22805 0.96050 0.81740 1.02035 1.88003 1.19818 1.29171 1.95816 1.22238 0.83361 0.90839 1.05418 1.20936 0.80770 0.92280 0.75870 1.90726 1.50433 1.54138 1.51502 1.48565 1.05455 1.08307 1.72321 1.22851 0.83695 0.92614 1.03118 1.22406 0.99956 0.91969 0.96179 0.85643 1.21794 1.01010 1.03106 0.94152 1.22367 0.91842 0.96455 1.00581 0.89447 1.20876 0.97342 0.83324 0.94734 1.42641 1.68248 1.01610 1.26642 1.19617 1.28352 0.86101 1.03658 0.90433 1.25620 1.02176 1.00828 0.98465 1.69828 1.47795 1.23399 1.21232 0.85188 0.78304 0.78712 0.77426 1.19860 1.22296 1.20612 1.21691 0.94952 0.83358 0.99783 0.93016 0.88223 0.93010 0.91177 0.91164 0.86956 0.86952 0.86821 0.88479 0.94902 0.89429 0.92498 0.94762 0.96017 0.79704 0.94068 0.94438 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.41 -10.25 9.88 -129.94 -1.28 -11.53 16 4 C 0.06 1.17 5.42 71.23 0.39 1.56 16 5 C 0.51 16.03 7.93 87.65 0.69 16.72 16 6 O -0.59 -26.19 16.83 16.00 0.27 -25.92 16 7 N -0.61 -16.85 3.31 -811.81 -2.69 -19.54 16 8 C 0.10 1.52 6.15 86.85 0.53 2.06 16 9 C -0.09 -1.60 3.54 -9.40 -0.03 -1.63 16 10 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 11 C -0.14 -2.77 8.13 71.98 0.59 -2.19 16 12 C -0.09 -2.80 2.88 -9.60 -0.03 -2.83 16 13 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 14 C 0.16 6.34 4.52 86.38 0.39 6.73 16 15 N -0.75 -38.93 5.45 -343.44 -1.87 -40.80 16 16 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 18 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 19 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 20 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 C 0.13 4.49 5.83 86.73 0.51 5.00 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.11 1.37 7.85 -2.39 -0.02 1.35 16 32 H 0.11 0.96 7.39 -2.39 -0.02 0.94 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.03 0.79 7.91 -2.39 -0.02 0.77 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.24 6.76 -2.39 -0.02 1.23 16 37 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.02 0.87 6.67 -2.39 -0.02 0.86 16 39 H 0.37 20.84 7.52 -92.71 -0.70 20.14 16 40 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.04 1.60 7.76 -2.39 -0.02 1.58 16 42 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -82.67 341.93 2.59 -80.08 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.29 Total: 22.06 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.56 Total: 7.73 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -4.28 Total: -121.84 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -1.01 Total: -37.46 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -82.67 2.59 -80.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699958541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.797 kcal (2) G-P(sol) polarization free energy of solvation -82.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds