Wall clock time and date at job start Mon Mar 30 2020 01:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47104 * 2 1 4 4 C 1.42903 * 113.99657 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47055 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46891 * 179.97438 * 5 4 3 7 7 O 1.21278 * 120.00484 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99804 * 179.97438 * 6 5 4 9 9 C 1.47425 * 125.64906 * 180.02562 * 8 6 5 10 10 C 1.54915 * 104.83334 * 204.09456 * 9 8 6 11 11 H 1.09001 * 111.00387 * 81.05917 * 10 9 8 12 12 C 1.52992 * 111.00370 * 204.91773 * 10 9 8 13 13 C 1.55165 * 101.57980 * 322.99105 * 10 9 8 14 14 H 1.09002 * 110.71751 * 153.86437 * 13 10 9 15 15 N 1.46504 * 110.71935 * 277.13806 * 13 10 9 16 16 C 1.36936 * 119.99698 * 199.97526 * 15 13 10 17 17 H 1.07997 * 120.00222 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99415 * 179.97438 * 16 15 13 19 19 N 1.31609 * 120.00382 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99361 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47054 * 60.00920 * 20 18 16 22 22 H 1.48501 * 109.46855 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47602 * 300.00227 * 20 18 16 24 24 C 1.47022 * 125.64758 * 359.97438 * 8 6 5 25 25 H 1.08995 * 109.47857 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47060 * 300.00538 * 1 2 3 27 27 H 1.09003 * 109.47180 * 59.99600 * 1 2 3 28 28 H 1.08995 * 109.46755 * 239.99757 * 2 1 3 29 29 H 1.09000 * 109.46714 * 119.99810 * 2 1 3 30 30 H 1.09002 * 109.47195 * 59.99892 * 4 3 2 31 31 H 1.08999 * 109.47261 * 299.99914 * 4 3 2 32 32 H 1.09002 * 109.47333 * 59.99822 * 5 4 3 33 33 H 1.08999 * 109.46889 * 299.99987 * 5 4 3 34 34 H 1.08997 * 110.36855 * 322.93198 * 9 8 6 35 35 H 1.08999 * 110.36490 * 85.14513 * 9 8 6 36 36 H 1.09006 * 109.47371 * 172.19356 * 12 10 9 37 37 H 1.09002 * 109.47302 * 292.19133 * 12 10 9 38 38 H 1.08999 * 109.47292 * 52.19384 * 12 10 9 39 39 H 0.96994 * 119.99856 * 19.97532 * 15 13 10 40 40 H 0.97006 * 120.00338 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.88723 * 59.55959 * 24 8 6 42 42 H 1.09000 * 110.01436 * 298.46511 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 5.3278 3.0572 0.0001 7 8 6.0153 2.0580 0.0001 8 7 5.9075 4.2739 0.0002 9 6 7.3586 4.5343 -0.0003 10 6 7.5077 5.9498 0.6113 11 1 7.4611 5.9120 1.6996 12 6 8.8027 6.6160 0.1426 13 6 6.2663 6.6741 0.0265 14 1 5.9555 7.4921 0.6764 15 7 6.5408 7.1616 -1.3276 16 6 5.7693 8.1563 -1.8666 17 1 4.9588 8.5816 -1.2935 18 6 6.0298 8.6185 -3.1494 19 7 7.0178 8.1004 -3.8476 20 14 4.9769 9.9748 -3.8850 21 1 5.0745 11.1912 -3.0388 22 1 5.4564 10.2852 -5.2558 23 1 3.5627 9.5260 -3.9456 24 6 5.1975 5.5613 -0.0003 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9765 -0.8908 31 1 3.8341 0.9763 0.8891 32 1 3.4232 3.4214 0.8906 33 1 3.4223 3.4223 -0.8894 34 1 7.8762 3.7987 0.6152 35 1 7.7468 4.5164 -1.0187 36 1 8.8168 7.6549 0.4723 37 1 9.6570 6.0886 0.5671 38 1 8.8571 6.5793 -0.9454 39 1 7.2690 6.7798 -1.8421 40 1 7.1996 8.4231 -4.7442 41 1 4.5633 5.6353 0.8831 42 1 4.5902 5.6521 -0.9009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700261017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:36 Heat of formation + Delta-G solvation = -77.690791 kcal Electronic energy + Delta-G solvation = -21095.810824 eV Core-core repulsion = 17883.000829 eV Total energy + Delta-G solvation = -3212.809995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.88271 -38.23748 -37.46602 -33.95284 -32.76031 -32.18127 -30.57449 -30.17119 -27.73299 -26.30985 -23.95257 -23.34398 -22.92369 -21.84257 -19.31139 -18.76599 -17.63264 -17.10866 -16.53792 -16.02603 -15.77492 -15.14614 -14.65683 -14.37082 -14.25852 -13.92114 -13.61675 -13.07488 -12.96886 -12.70854 -12.55809 -12.15996 -12.01131 -11.92579 -11.82659 -11.56748 -11.17445 -11.15764 -11.11102 -10.92449 -10.77137 -10.47585 -10.30459 -9.95406 -9.71457 -9.68856 -9.61610 -9.02360 -8.26690 -7.08883 -5.85500 -3.15776 2.86232 3.07424 3.39321 3.44334 3.45231 3.79311 4.51472 4.73831 4.85506 4.89419 5.03305 5.05572 5.16280 5.17064 5.26472 5.33273 5.43499 5.50563 5.55935 5.63848 5.68960 5.76209 5.79066 5.85154 5.91458 5.93926 5.94471 6.17586 6.24878 6.33245 6.35690 6.51542 6.61408 6.74317 6.91064 7.08956 7.61854 7.86228 8.32242 8.39519 9.44286 9.98884 10.33663 11.36525 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016547 B = 0.004361 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.794081 B = 6419.370409 C = 7683.316555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.393 6.393 4 C 0.080 3.920 5 C -0.134 4.134 6 C 0.531 3.469 7 O -0.560 6.560 8 N -0.605 5.605 9 C 0.115 3.885 10 C -0.114 4.114 11 H 0.078 0.922 12 C -0.131 4.131 13 C 0.172 3.828 14 H 0.070 0.930 15 N -0.712 5.712 16 C -0.248 4.248 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.069 3.931 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.056 0.944 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 -10.886 10.006 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.312 6.312 4 C 0.004 3.996 5 C -0.174 4.174 6 C 0.319 3.681 7 O -0.440 6.440 8 N -0.337 5.337 9 C -0.008 4.008 10 C -0.134 4.134 11 H 0.097 0.903 12 C -0.189 4.189 13 C 0.060 3.940 14 H 0.088 0.912 15 N -0.354 5.354 16 C -0.379 4.379 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.057 4.057 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.223 0.777 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.180 -11.158 9.919 16.159 hybrid contribution -0.290 0.446 -0.722 0.897 sum -6.470 -10.712 9.198 15.531 Atomic orbital electron populations 1.21748 0.93801 1.02107 1.03186 1.22430 0.95431 0.83797 1.00158 1.87820 1.21359 1.26512 1.95556 1.22108 0.80356 0.95677 1.01505 1.21415 0.92694 0.97593 1.05708 1.19960 0.89794 0.81998 0.76318 1.90666 1.65515 1.35909 1.51894 1.48422 1.08108 1.05717 1.71460 1.22266 0.80948 0.96385 1.01153 1.22616 0.97125 0.94175 0.99481 0.90317 1.21544 0.94526 1.00171 1.02634 1.21205 0.90943 0.92757 0.89110 0.91170 1.42452 1.38373 1.43110 1.11416 1.19184 1.10078 1.11274 0.97390 0.91014 1.24749 0.98581 1.00031 0.97078 1.69641 1.31431 1.44927 1.11685 0.86270 0.79754 0.81851 0.78284 1.21180 1.21711 1.21198 1.23322 0.97604 0.83558 1.01217 0.91211 0.91878 0.91779 0.93360 0.93449 0.92479 0.92621 0.88316 0.87940 0.91316 0.91216 0.92070 0.93659 0.91195 0.77723 0.93304 0.92588 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.85 16 2 C 0.06 0.58 6.66 37.16 0.25 0.83 16 3 O -0.39 -5.09 10.34 -35.23 -0.36 -5.45 16 4 C 0.08 1.07 5.23 37.16 0.19 1.26 16 5 C -0.13 -1.85 5.26 -27.88 -0.15 -1.99 16 6 C 0.53 8.95 7.85 -10.99 -0.09 8.86 16 7 O -0.56 -10.92 16.24 5.56 0.09 -10.83 16 8 N -0.60 -10.18 3.33 -170.52 -0.57 -10.75 16 9 C 0.11 1.90 6.35 -2.53 -0.02 1.88 16 10 C -0.11 -1.76 3.51 -88.47 -0.31 -2.07 16 11 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 12 C -0.13 -2.03 8.85 37.15 0.33 -1.71 16 13 C 0.17 3.10 3.37 -66.09 -0.22 2.88 16 14 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 15 N -0.71 -16.36 4.61 -51.64 -0.24 -16.59 16 16 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 17 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.93 -26.96 13.06 55.49 0.72 -26.23 16 20 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.07 1.14 6.23 -3.06 -0.02 1.12 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 35 H 0.07 1.27 7.99 -51.93 -0.41 0.85 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.26 6.38 -51.93 -0.33 0.93 16 39 H 0.39 9.58 6.10 -40.82 -0.25 9.33 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.47 8.04 -51.93 -0.42 1.06 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -30.23 344.08 -7.38 -37.60 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.29 Total: 7.21 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 0.10 Total: 3.34 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.08 Total: -53.57 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.27 Total: -16.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.23 -7.38 -37.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700261017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.086 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds