Wall clock time and date at job start Mon Mar 30 2020 01:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47104 * 2 1 4 4 C 1.42903 * 113.99657 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47055 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46891 * 179.97438 * 5 4 3 7 7 O 1.21278 * 120.00484 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99804 * 179.97438 * 6 5 4 9 9 C 1.47425 * 125.64906 * 180.02562 * 8 6 5 10 10 C 1.54915 * 104.83334 * 204.09456 * 9 8 6 11 11 H 1.09001 * 111.00387 * 81.05917 * 10 9 8 12 12 C 1.52992 * 111.00370 * 204.91773 * 10 9 8 13 13 C 1.55165 * 101.57980 * 322.99105 * 10 9 8 14 14 H 1.09002 * 110.71751 * 153.86437 * 13 10 9 15 15 N 1.46504 * 110.71935 * 277.13806 * 13 10 9 16 16 C 1.36936 * 119.99698 * 199.97526 * 15 13 10 17 17 H 1.07997 * 120.00222 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99415 * 179.97438 * 16 15 13 19 19 N 1.31609 * 120.00382 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99361 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47054 * 60.00920 * 20 18 16 22 22 H 1.48501 * 109.46855 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47602 * 300.00227 * 20 18 16 24 24 C 1.47022 * 125.64758 * 359.97438 * 8 6 5 25 25 H 1.08995 * 109.47857 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47060 * 300.00538 * 1 2 3 27 27 H 1.09003 * 109.47180 * 59.99600 * 1 2 3 28 28 H 1.08995 * 109.46755 * 239.99757 * 2 1 3 29 29 H 1.09000 * 109.46714 * 119.99810 * 2 1 3 30 30 H 1.09002 * 109.47195 * 59.99892 * 4 3 2 31 31 H 1.08999 * 109.47261 * 299.99914 * 4 3 2 32 32 H 1.09002 * 109.47333 * 59.99822 * 5 4 3 33 33 H 1.08999 * 109.46889 * 299.99987 * 5 4 3 34 34 H 1.08997 * 110.36855 * 322.93198 * 9 8 6 35 35 H 1.08999 * 110.36490 * 85.14513 * 9 8 6 36 36 H 1.09006 * 109.47371 * 172.19356 * 12 10 9 37 37 H 1.09002 * 109.47302 * 292.19133 * 12 10 9 38 38 H 1.08999 * 109.47292 * 52.19384 * 12 10 9 39 39 H 0.96994 * 119.99856 * 19.97532 * 15 13 10 40 40 H 0.97006 * 120.00338 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.88723 * 59.55959 * 24 8 6 42 42 H 1.09000 * 110.01436 * 298.46511 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 5.3278 3.0572 0.0001 7 8 6.0153 2.0580 0.0001 8 7 5.9075 4.2739 0.0002 9 6 7.3586 4.5343 -0.0003 10 6 7.5077 5.9498 0.6113 11 1 7.4611 5.9120 1.6996 12 6 8.8027 6.6160 0.1426 13 6 6.2663 6.6741 0.0265 14 1 5.9555 7.4921 0.6764 15 7 6.5408 7.1616 -1.3276 16 6 5.7693 8.1563 -1.8666 17 1 4.9588 8.5816 -1.2935 18 6 6.0298 8.6185 -3.1494 19 7 7.0178 8.1004 -3.8476 20 14 4.9769 9.9748 -3.8850 21 1 5.0745 11.1912 -3.0388 22 1 5.4564 10.2852 -5.2558 23 1 3.5627 9.5260 -3.9456 24 6 5.1975 5.5613 -0.0003 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9765 -0.8908 31 1 3.8341 0.9763 0.8891 32 1 3.4232 3.4214 0.8906 33 1 3.4223 3.4223 -0.8894 34 1 7.8762 3.7987 0.6152 35 1 7.7468 4.5164 -1.0187 36 1 8.8168 7.6549 0.4723 37 1 9.6570 6.0886 0.5671 38 1 8.8571 6.5793 -0.9454 39 1 7.2690 6.7798 -1.8421 40 1 7.1996 8.4231 -4.7442 41 1 4.5633 5.6353 0.8831 42 1 4.5902 5.6521 -0.9009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700261017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:36 Heat of formation + Delta-G solvation = -97.067243 kcal Electronic energy + Delta-G solvation = -21096.651050 eV Core-core repulsion = 17883.000829 eV Total energy + Delta-G solvation = -3213.650221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23219 -39.38196 -38.69423 -35.69395 -34.09898 -33.32387 -32.22803 -31.14924 -29.30919 -27.57747 -25.78281 -24.57312 -23.68658 -23.19892 -20.71465 -20.09311 -19.38337 -18.37355 -17.60872 -17.24160 -17.08781 -16.46292 -16.21916 -15.77119 -15.48244 -15.24536 -14.89341 -14.57155 -14.42591 -14.01753 -13.52118 -13.37444 -13.16816 -13.07667 -13.00060 -12.85776 -12.76421 -12.70979 -12.31371 -12.16631 -12.06104 -12.04563 -11.94032 -11.44799 -11.36716 -11.07507 -10.88082 -10.62030 -9.65981 -8.99701 -7.90777 -5.18987 1.51510 1.52870 1.53259 1.58723 1.87609 2.59251 2.75885 3.41060 3.48401 3.76482 3.89480 3.92205 3.99508 4.04460 4.10197 4.16647 4.36604 4.41238 4.44739 4.49249 4.61449 4.65440 4.70253 4.72190 4.79130 4.88742 4.90447 4.99455 5.02238 5.03583 5.21669 5.26834 5.27404 5.34958 5.55280 5.60918 6.17718 6.30627 6.52622 7.05732 7.38295 8.13057 8.35435 9.32371 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016547 B = 0.004361 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.794081 B = 6419.370409 C = 7683.316555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.406 6.406 4 C 0.086 3.914 5 C -0.126 4.126 6 C 0.527 3.473 7 O -0.590 6.590 8 N -0.607 5.607 9 C 0.114 3.886 10 C -0.099 4.099 11 H 0.112 0.888 12 C -0.126 4.126 13 C 0.161 3.839 14 H 0.083 0.917 15 N -0.724 5.724 16 C -0.236 4.236 17 H 0.084 0.916 18 C -0.073 4.073 19 N -0.970 5.970 20 Si 0.968 3.032 21 H -0.277 1.277 22 H -0.303 1.303 23 H -0.279 1.279 24 C 0.079 3.921 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.375 0.625 40 H 0.248 0.752 41 H 0.093 0.907 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 -11.017 12.086 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.326 6.326 4 C 0.009 3.991 5 C -0.166 4.166 6 C 0.317 3.683 7 O -0.472 6.472 8 N -0.339 5.339 9 C -0.009 4.009 10 C -0.118 4.118 11 H 0.130 0.870 12 C -0.183 4.183 13 C 0.051 3.949 14 H 0.101 0.899 15 N -0.364 5.364 16 C -0.368 4.368 17 H 0.101 0.899 18 C -0.266 4.266 19 N -0.621 5.621 20 Si 0.798 3.202 21 H -0.203 1.203 22 H -0.230 1.230 23 H -0.206 1.206 24 C -0.047 4.047 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.208 0.792 40 H 0.057 0.943 41 H 0.111 0.889 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.619 -11.291 12.057 18.191 hybrid contribution 0.142 0.407 -1.283 1.354 sum -7.478 -10.883 10.774 17.042 Atomic orbital electron populations 1.21766 0.92381 1.03512 1.02846 1.22701 0.96623 0.82616 1.00888 1.87798 1.20806 1.28413 1.95631 1.21982 0.80829 0.95211 1.01086 1.21382 0.90285 0.98275 1.06653 1.20488 0.90970 0.81426 0.75407 1.90650 1.66491 1.36793 1.53230 1.48520 1.08204 1.05947 1.71240 1.22247 0.81115 0.97491 1.00036 1.22585 0.95692 0.92547 1.00984 0.87024 1.21474 0.95846 1.00471 1.00553 1.21496 0.92780 0.93701 0.86930 0.89871 1.42624 1.37772 1.42789 1.13246 1.19623 1.09471 1.10584 0.97126 0.89858 1.25486 1.00213 1.02789 0.98083 1.69806 1.33683 1.46927 1.11645 0.85293 0.78354 0.79716 0.76866 1.20268 1.22994 1.20562 1.23130 0.96971 0.82719 1.01831 0.88970 0.91915 0.92380 0.93013 0.92369 0.93603 0.92413 0.86120 0.87980 0.90369 0.93790 0.92321 0.91044 0.94474 0.79158 0.94285 0.88921 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.05 0.88 6.66 71.98 0.48 1.36 16 3 O -0.41 -9.94 10.34 -148.98 -1.54 -11.48 16 4 C 0.09 2.18 5.23 71.98 0.38 2.56 16 5 C -0.13 -3.27 5.26 29.85 0.16 -3.11 16 6 C 0.53 17.15 7.85 87.66 0.69 17.84 16 7 O -0.59 -22.67 16.24 -3.02 -0.05 -22.72 16 8 N -0.61 -19.56 3.33 -811.79 -2.70 -22.26 16 9 C 0.11 3.65 6.35 86.86 0.55 4.20 16 10 C -0.10 -2.83 3.51 -9.40 -0.03 -2.86 16 11 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 12 C -0.13 -3.76 8.85 71.98 0.64 -3.12 16 13 C 0.16 5.50 3.37 46.18 0.16 5.65 16 14 H 0.08 2.67 8.12 -2.39 -0.02 2.65 16 15 N -0.72 -33.16 4.61 -317.30 -1.46 -34.62 16 16 C -0.24 -12.10 9.98 84.03 0.84 -11.26 16 17 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 19 N -0.97 -57.78 13.06 21.65 0.28 -57.50 16 20 Si 0.97 44.53 29.55 68.60 2.03 46.56 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 C 0.08 2.44 6.23 86.73 0.54 2.98 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 31 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 32 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 35 H 0.04 1.63 7.99 -2.39 -0.02 1.61 16 36 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.04 1.36 6.38 -2.39 -0.02 1.34 16 39 H 0.37 19.01 6.10 -92.71 -0.57 18.44 16 40 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 41 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 2.03 8.04 -2.39 -0.02 2.01 16 Total: -1.00 -65.44 344.08 2.57 -62.87 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.42 Total: 29.87 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 5.60 Total: 9.27 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -3.88 Total: -114.38 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.59 Total: -34.20 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -65.44 2.57 -62.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700261017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.197 kcal (2) G-P(sol) polarization free energy of solvation -65.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds