Wall clock time and date at job start Mon Mar 30 2020 01:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47530 * 2 1 4 4 C 1.42900 * 114.00430 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46990 * 29.99591 * 4 3 2 6 6 C 1.53002 * 109.47057 * 270.00255 * 4 3 2 7 7 C 1.50692 * 109.47485 * 149.99989 * 4 3 2 8 8 O 1.21279 * 120.00109 * 5.00202 * 7 4 3 9 9 N 1.34779 * 120.00218 * 185.00041 * 7 4 3 10 10 C 1.46499 * 119.99818 * 359.97438 * 9 7 4 11 11 C 1.46491 * 120.00096 * 180.02562 * 9 7 4 12 12 C 1.53785 * 113.69266 * 198.27396 * 11 9 7 13 13 C 1.53785 * 87.07933 * 89.12749 * 12 11 9 14 14 N 1.46497 * 113.61184 * 270.88470 * 13 12 11 15 15 C 1.36941 * 120.00201 * 256.09801 * 14 13 12 16 16 H 1.07995 * 119.99470 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00114 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00026 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99892 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47439 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47285 * 120.00212 * 19 17 15 22 22 H 1.48501 * 109.47264 * 240.00105 * 19 17 15 23 23 C 1.53783 * 87.08201 * 25.43432 * 13 12 11 24 24 H 1.08999 * 109.47331 * 300.00086 * 1 2 3 25 25 H 1.09004 * 109.47361 * 59.99799 * 1 2 3 26 26 H 1.08997 * 109.47533 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46946 * 239.99555 * 2 1 3 28 28 H 1.09005 * 109.46997 * 120.00600 * 2 1 3 29 29 H 1.09002 * 109.46974 * 300.00245 * 6 4 3 30 30 H 1.09005 * 109.47351 * 59.99234 * 6 4 3 31 31 H 1.09001 * 109.47457 * 179.97438 * 6 4 3 32 32 H 1.08995 * 109.47648 * 264.66340 * 10 9 7 33 33 H 1.09002 * 109.46837 * 24.66321 * 10 9 7 34 34 H 1.09003 * 109.47095 * 144.65682 * 10 9 7 35 35 H 1.09002 * 112.85188 * 67.00440 * 11 9 7 36 36 H 1.08997 * 113.61761 * 203.67388 * 12 11 9 37 37 H 1.08994 * 113.60944 * 334.57829 * 12 11 9 38 38 H 1.08998 * 113.68895 * 139.99731 * 13 12 11 39 39 H 0.97002 * 120.00109 * 76.10382 * 14 13 12 40 40 H 0.96998 * 120.00370 * 179.97438 * 18 17 15 41 41 H 1.08999 * 113.61094 * 220.01814 * 23 13 12 42 42 H 1.08997 * 113.61160 * 89.11272 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.9399 1.5000 1.4417 7 6 3.8343 2.7263 -0.7109 8 8 2.9857 3.5048 -1.0914 9 7 5.1381 2.9938 -0.9234 10 6 6.1631 2.0538 -0.4633 11 6 5.5302 4.2251 -1.6134 12 6 6.9627 4.1912 -2.1718 13 6 6.3633 3.5984 -3.4579 14 7 6.2790 2.1359 -3.4461 15 6 7.1784 1.3923 -4.1627 16 1 7.9501 1.8842 -4.7361 17 6 7.0982 0.0066 -4.1519 18 7 6.1573 -0.5927 -3.4534 19 14 8.3246 -1.0076 -5.1299 20 1 9.2734 -0.1013 -5.8254 21 1 9.0752 -1.8991 -4.2097 22 1 7.5999 -1.8286 -6.1329 23 6 5.0474 4.2944 -3.0719 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8900 29 1 3.5076 2.3584 1.9559 30 1 3.6481 0.5841 1.9556 31 1 5.0266 1.5856 1.4414 32 1 6.5314 2.3671 0.5135 33 1 5.7321 1.0555 -0.3859 34 1 6.9884 2.0390 -1.1752 35 1 5.3075 5.1229 -1.0367 36 1 7.4011 5.1796 -2.3096 37 1 7.6221 3.5049 -1.6406 38 1 6.8125 3.9891 -4.3710 39 1 5.5860 1.6942 -2.9308 40 1 6.1010 -1.5610 -3.4461 41 1 4.1608 3.6914 -3.2675 42 1 4.9624 5.3110 -3.4558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701016325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:27 Heat of formation + Delta-G solvation = -33.995285 kcal Electronic energy + Delta-G solvation = -22427.803448 eV Core-core repulsion = 19216.888232 eV Total energy + Delta-G solvation = -3210.915215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26070 -38.39862 -36.93912 -34.32861 -33.31000 -31.90604 -30.11718 -29.64899 -26.84265 -25.13351 -24.68670 -23.74326 -22.76479 -22.11255 -19.61176 -17.91881 -17.42511 -16.86393 -16.34329 -15.93646 -15.42616 -15.08284 -14.73687 -14.23562 -13.96359 -13.43344 -13.35940 -13.00747 -12.92967 -12.49384 -12.42953 -12.15772 -11.95469 -11.86384 -11.63814 -11.31829 -11.29660 -11.01038 -10.92560 -10.86556 -10.77209 -10.22865 -10.06002 -9.80870 -9.66055 -9.53687 -8.99310 -8.91174 -8.07347 -7.03297 -5.86861 -3.14815 3.05345 3.13034 3.36896 3.44168 3.45370 4.05843 4.51525 4.77135 5.07964 5.11579 5.20561 5.22562 5.27652 5.37189 5.44147 5.47802 5.50371 5.55701 5.73402 5.80773 5.83510 5.84898 5.87890 5.97442 5.99241 6.14078 6.18655 6.19229 6.36076 6.38099 6.61978 6.67273 6.77759 6.91412 7.12782 7.33512 7.65584 7.85363 8.33203 8.65601 9.44667 10.02530 10.38886 11.35572 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.006751 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.346636 B = 4146.503308 C = 5228.243717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.070 3.930 5 H 0.095 0.905 6 C -0.174 4.174 7 C 0.520 3.480 8 O -0.528 6.528 9 N -0.584 5.584 10 C 0.067 3.933 11 C 0.130 3.870 12 C -0.183 4.183 13 C 0.164 3.836 14 N -0.705 5.705 15 C -0.240 4.240 16 H 0.072 0.928 17 C -0.011 4.011 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.162 4.162 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.387 0.613 40 H 0.254 0.746 41 H 0.073 0.927 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 3.323 9.392 10.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.279 6.279 4 C 0.009 3.991 5 H 0.113 0.887 6 C -0.231 4.231 7 C 0.307 3.693 8 O -0.404 6.404 9 N -0.318 5.318 10 C -0.076 4.076 11 C 0.027 3.973 12 C -0.224 4.224 13 C 0.052 3.948 14 N -0.344 5.344 15 C -0.371 4.371 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.202 4.202 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.222 0.778 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.514 3.791 9.057 10.428 hybrid contribution 0.655 -1.112 -0.287 1.322 sum -2.859 2.679 8.770 9.605 Atomic orbital electron populations 1.21707 0.93791 1.01936 1.03100 1.22570 0.95557 0.83852 1.00360 1.87986 1.18806 1.26110 1.94979 1.21885 0.83224 0.97500 0.96480 0.88690 1.22346 1.02488 1.03045 0.95260 1.20215 0.82127 0.87368 0.79577 1.90656 1.49889 1.49047 1.50813 1.47363 1.05423 1.21913 1.57110 1.22163 0.93811 0.92270 0.99315 1.21731 0.97043 0.85819 0.92710 1.24219 0.94770 1.01514 1.01879 1.21178 0.93232 0.85849 0.94582 1.42317 1.36392 0.98551 1.57187 1.19356 1.07316 0.88549 1.21916 0.90961 1.24715 0.98883 0.96477 1.00646 1.69656 1.34684 1.08560 1.45118 0.86115 0.80405 0.80269 0.79364 1.20572 1.21892 1.21938 1.23709 1.00167 1.01065 0.95219 0.92087 0.91719 0.91231 0.92751 0.93497 0.91643 0.91605 0.90249 0.93739 0.90657 0.87872 0.91250 0.90092 0.90279 0.92014 0.77768 0.93573 0.90839 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 37.16 0.38 -1.34 16 2 C 0.05 0.74 6.47 37.16 0.24 0.98 16 3 O -0.36 -6.29 9.53 -55.09 -0.52 -6.81 16 4 C 0.07 1.17 2.31 -27.89 -0.06 1.11 16 5 H 0.10 1.62 6.79 -51.93 -0.35 1.27 16 6 C -0.17 -2.27 9.20 37.16 0.34 -1.93 16 7 C 0.52 10.12 6.80 -10.99 -0.07 10.04 16 8 O -0.53 -11.99 15.54 -14.30 -0.22 -12.21 16 9 N -0.58 -10.44 2.11 -173.01 -0.37 -10.80 16 10 C 0.07 1.09 7.23 59.85 0.43 1.53 16 11 C 0.13 2.27 4.12 -67.12 -0.28 1.99 16 12 C -0.18 -3.02 7.16 -25.91 -0.19 -3.21 16 13 C 0.16 3.26 4.55 -67.12 -0.31 2.95 16 14 N -0.70 -16.91 3.85 -52.64 -0.20 -17.12 16 15 C -0.24 -6.33 9.98 -15.06 -0.15 -6.48 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -26.18 13.06 55.49 0.72 -25.45 16 19 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 C -0.16 -3.02 7.13 -25.92 -0.18 -3.21 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.05 0.55 7.87 -51.93 -0.41 0.14 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 31 H 0.08 0.95 5.21 -51.93 -0.27 0.68 16 32 H 0.04 0.59 7.36 -51.93 -0.38 0.21 16 33 H 0.07 1.25 5.70 -51.93 -0.30 0.96 16 34 H 0.10 1.94 4.69 -51.93 -0.24 1.70 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.36 5.78 -51.93 -0.30 1.06 16 38 H 0.06 1.22 8.12 -51.93 -0.42 0.79 16 39 H 0.39 9.85 6.07 -40.82 -0.25 9.60 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.07 1.61 7.26 -51.93 -0.38 1.23 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -30.94 329.62 -7.22 -38.16 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.63 Total: 10.79 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 0.06 Total: 2.03 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.16 Total: -53.37 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.75 Total: -19.03 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.94 -7.22 -38.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701016325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.165 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds