Wall clock time and date at job start Mon Mar 30 2020 01:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47530 * 2 1 4 4 C 1.42900 * 114.00430 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46990 * 29.99591 * 4 3 2 6 6 C 1.53002 * 109.47057 * 270.00255 * 4 3 2 7 7 C 1.50692 * 109.47485 * 149.99989 * 4 3 2 8 8 O 1.21279 * 120.00109 * 5.00202 * 7 4 3 9 9 N 1.34779 * 120.00218 * 185.00041 * 7 4 3 10 10 C 1.46499 * 119.99818 * 359.97438 * 9 7 4 11 11 C 1.46491 * 120.00096 * 180.02562 * 9 7 4 12 12 C 1.53785 * 113.69266 * 198.27396 * 11 9 7 13 13 C 1.53785 * 87.07933 * 89.12749 * 12 11 9 14 14 N 1.46497 * 113.61184 * 270.88470 * 13 12 11 15 15 C 1.36941 * 120.00201 * 256.09801 * 14 13 12 16 16 H 1.07995 * 119.99470 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00114 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00026 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99892 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47439 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47285 * 120.00212 * 19 17 15 22 22 H 1.48501 * 109.47264 * 240.00105 * 19 17 15 23 23 C 1.53783 * 87.08201 * 25.43432 * 13 12 11 24 24 H 1.08999 * 109.47331 * 300.00086 * 1 2 3 25 25 H 1.09004 * 109.47361 * 59.99799 * 1 2 3 26 26 H 1.08997 * 109.47533 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46946 * 239.99555 * 2 1 3 28 28 H 1.09005 * 109.46997 * 120.00600 * 2 1 3 29 29 H 1.09002 * 109.46974 * 300.00245 * 6 4 3 30 30 H 1.09005 * 109.47351 * 59.99234 * 6 4 3 31 31 H 1.09001 * 109.47457 * 179.97438 * 6 4 3 32 32 H 1.08995 * 109.47648 * 264.66340 * 10 9 7 33 33 H 1.09002 * 109.46837 * 24.66321 * 10 9 7 34 34 H 1.09003 * 109.47095 * 144.65682 * 10 9 7 35 35 H 1.09002 * 112.85188 * 67.00440 * 11 9 7 36 36 H 1.08997 * 113.61761 * 203.67388 * 12 11 9 37 37 H 1.08994 * 113.60944 * 334.57829 * 12 11 9 38 38 H 1.08998 * 113.68895 * 139.99731 * 13 12 11 39 39 H 0.97002 * 120.00109 * 76.10382 * 14 13 12 40 40 H 0.96998 * 120.00370 * 179.97438 * 18 17 15 41 41 H 1.08999 * 113.61094 * 220.01814 * 23 13 12 42 42 H 1.08997 * 113.61160 * 89.11272 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.9399 1.5000 1.4417 7 6 3.8343 2.7263 -0.7109 8 8 2.9857 3.5048 -1.0914 9 7 5.1381 2.9938 -0.9234 10 6 6.1631 2.0538 -0.4633 11 6 5.5302 4.2251 -1.6134 12 6 6.9627 4.1912 -2.1718 13 6 6.3633 3.5984 -3.4579 14 7 6.2790 2.1359 -3.4461 15 6 7.1784 1.3923 -4.1627 16 1 7.9501 1.8842 -4.7361 17 6 7.0982 0.0066 -4.1519 18 7 6.1573 -0.5927 -3.4534 19 14 8.3246 -1.0076 -5.1299 20 1 9.2734 -0.1013 -5.8254 21 1 9.0752 -1.8991 -4.2097 22 1 7.5999 -1.8286 -6.1329 23 6 5.0474 4.2944 -3.0719 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8900 29 1 3.5076 2.3584 1.9559 30 1 3.6481 0.5841 1.9556 31 1 5.0266 1.5856 1.4414 32 1 6.5314 2.3671 0.5135 33 1 5.7321 1.0555 -0.3859 34 1 6.9884 2.0390 -1.1752 35 1 5.3075 5.1229 -1.0367 36 1 7.4011 5.1796 -2.3096 37 1 7.6221 3.5049 -1.6406 38 1 6.8125 3.9891 -4.3710 39 1 5.5860 1.6942 -2.9308 40 1 6.1010 -1.5610 -3.4461 41 1 4.1608 3.6914 -3.2675 42 1 4.9624 5.3110 -3.4558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701016325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:27 Heat of formation + Delta-G solvation = -52.628512 kcal Electronic energy + Delta-G solvation = -22428.611445 eV Core-core repulsion = 19216.888232 eV Total energy + Delta-G solvation = -3211.723213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.71327 -39.78521 -38.36363 -35.88764 -35.10959 -33.09433 -31.86455 -30.90688 -28.24496 -26.73068 -26.05176 -25.42403 -24.03426 -23.43402 -21.08167 -19.52460 -19.18593 -18.19330 -17.73715 -17.40632 -16.68263 -16.56636 -16.45641 -15.72043 -15.47161 -15.01009 -14.84979 -14.52510 -14.17793 -13.82814 -13.57148 -13.40489 -13.32567 -13.10811 -13.06557 -12.86886 -12.75464 -12.53897 -12.47827 -12.23196 -12.08626 -12.03863 -11.68138 -11.63157 -11.18053 -10.90358 -10.79793 -10.38259 -9.51266 -8.95595 -7.91353 -5.19025 1.49036 1.51409 1.57397 1.59607 1.80448 2.57565 2.83547 3.40129 3.44170 3.73129 3.79996 3.91412 3.94317 4.03824 4.16751 4.25508 4.31090 4.35583 4.39879 4.45327 4.57814 4.67886 4.76370 4.84559 4.86452 4.91543 4.94762 5.00003 5.08670 5.09516 5.19524 5.23502 5.35663 5.43694 5.55438 5.73873 6.10773 6.31319 6.43515 7.18500 7.37959 8.12411 8.38678 9.31363 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.006751 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.346636 B = 4146.503308 C = 5228.243717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 O -0.387 6.387 4 C 0.072 3.928 5 H 0.085 0.915 6 C -0.163 4.163 7 C 0.510 3.490 8 O -0.571 6.571 9 N -0.582 5.582 10 C 0.071 3.929 11 C 0.126 3.874 12 C -0.156 4.156 13 C 0.144 3.856 14 N -0.716 5.716 15 C -0.240 4.240 16 H 0.076 0.924 17 C -0.066 4.066 18 N -0.961 5.961 19 Si 0.967 3.033 20 H -0.270 1.270 21 H -0.291 1.291 22 H -0.302 1.302 23 C -0.157 4.157 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.377 0.623 40 H 0.250 0.750 41 H 0.033 0.967 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 3.840 10.546 11.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 O -0.306 6.306 4 C 0.011 3.989 5 H 0.102 0.898 6 C -0.221 4.221 7 C 0.298 3.702 8 O -0.450 6.450 9 N -0.315 5.315 10 C -0.071 4.071 11 C 0.023 3.977 12 C -0.196 4.196 13 C 0.034 3.966 14 N -0.355 5.355 15 C -0.371 4.371 16 H 0.094 0.906 17 C -0.258 4.258 18 N -0.611 5.611 19 Si 0.798 3.202 20 H -0.194 1.194 21 H -0.218 1.218 22 H -0.230 1.230 23 C -0.197 4.197 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.115 0.885 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.210 0.790 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.274 4.344 10.214 11.330 hybrid contribution 0.258 -1.213 -0.704 1.426 sum -2.016 3.131 9.510 10.213 Atomic orbital electron populations 1.21736 0.92213 1.03570 1.02632 1.22814 0.96910 0.82478 1.00855 1.87956 1.19190 1.28272 1.95200 1.21931 0.83213 0.95445 0.98336 0.89763 1.22297 1.03036 1.04144 0.92591 1.20811 0.82203 0.87915 0.79258 1.90618 1.51013 1.50657 1.52742 1.47473 1.05355 1.22170 1.56468 1.22172 0.92489 0.91960 1.00432 1.21884 0.97415 0.86305 0.92141 1.24029 0.94098 1.02896 0.98613 1.21476 0.94715 0.83958 0.96447 1.42411 1.35839 1.00243 1.57051 1.19655 1.07230 0.88988 1.21270 0.90628 1.25396 1.00729 0.97559 1.02165 1.69793 1.36318 1.08284 1.46703 0.85162 0.78530 0.78715 0.77813 1.19428 1.21845 1.22969 1.23705 0.97652 1.01674 0.96648 0.91392 0.93308 0.88530 0.94184 0.90994 0.91749 0.89414 0.89039 0.89977 0.91314 0.90043 0.89546 0.86431 0.90540 0.91837 0.78976 0.94127 0.94847 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 10.28 71.98 0.74 -2.53 16 2 C 0.05 1.25 6.47 71.98 0.47 1.71 16 3 O -0.39 -13.66 9.53 -129.99 -1.24 -14.90 16 4 C 0.07 2.40 2.31 29.85 0.07 2.47 16 5 H 0.08 2.96 6.79 -2.39 -0.02 2.95 16 6 C -0.16 -3.98 9.20 71.98 0.66 -3.32 16 7 C 0.51 20.05 6.80 87.65 0.60 20.65 16 8 O -0.57 -26.61 15.54 15.96 0.25 -26.36 16 9 N -0.58 -20.45 2.11 -819.66 -1.73 -22.18 16 10 C 0.07 2.26 7.23 127.77 0.92 3.18 16 11 C 0.13 4.18 4.12 45.52 0.19 4.37 16 12 C -0.16 -4.75 7.16 31.12 0.22 -4.53 16 13 C 0.14 5.60 4.55 45.52 0.21 5.81 16 14 N -0.72 -34.56 3.85 -320.45 -1.23 -35.80 16 15 C -0.24 -12.61 9.98 84.03 0.84 -11.77 16 16 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 17 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 18 N -0.96 -54.89 13.06 21.65 0.28 -54.61 16 19 Si 0.97 44.25 29.55 68.60 2.03 46.28 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 23 C -0.16 -5.79 7.13 31.12 0.22 -5.56 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.19 8.08 -2.39 -0.02 1.17 16 28 H 0.07 1.59 7.87 -2.38 -0.02 1.57 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.75 7.87 -2.38 -0.02 1.73 16 31 H 0.09 1.97 5.21 -2.39 -0.01 1.96 16 32 H 0.08 1.97 7.36 -2.39 -0.02 1.95 16 33 H 0.07 2.26 5.70 -2.39 -0.01 2.25 16 34 H 0.08 2.99 4.69 -2.39 -0.01 2.98 16 35 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.08 2.44 5.78 -2.39 -0.01 2.42 16 38 H 0.06 2.42 8.12 -2.39 -0.02 2.40 16 39 H 0.38 19.61 6.07 -92.71 -0.56 19.04 16 40 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 41 H 0.03 1.49 7.26 -2.39 -0.02 1.48 16 42 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -68.13 329.62 4.41 -63.72 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: 0.45 Total: 36.46 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 5.60 Total: 7.39 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -2.68 Total: -112.58 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.99 Total: -41.26 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -68.13 4.41 -63.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701016325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.089 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds