Wall clock time and date at job start Mon Mar 30 2020 01:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47159 * 2 1 4 4 C 1.42892 * 114.00174 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47487 * 330.00021 * 4 3 2 6 6 C 1.53008 * 109.47232 * 90.00103 * 4 3 2 7 7 C 1.50696 * 109.47407 * 210.00074 * 4 3 2 8 8 O 1.21278 * 120.00092 * 350.32890 * 7 4 3 9 9 N 1.34775 * 120.00392 * 170.32992 * 7 4 3 10 10 C 1.46503 * 119.99964 * 4.91527 * 9 7 4 11 11 C 1.46506 * 120.00476 * 184.91886 * 9 7 4 12 12 C 1.53777 * 113.61227 * 65.92970 * 11 9 7 13 13 C 1.53784 * 87.08125 * 89.20033 * 12 11 9 14 14 N 1.46495 * 113.61775 * 270.79851 * 13 12 11 15 15 C 1.36934 * 120.00047 * 200.68608 * 14 13 12 16 16 H 1.08003 * 120.00390 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99914 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00178 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99961 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47072 * 89.99856 * 19 17 15 21 21 H 1.48502 * 109.47135 * 209.99794 * 19 17 15 22 22 H 1.48499 * 109.47164 * 329.99706 * 19 17 15 23 23 C 1.53785 * 87.17022 * 25.38957 * 13 12 11 24 24 H 1.09002 * 109.47022 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47683 * 300.00172 * 1 2 3 26 26 H 1.08998 * 109.46757 * 60.00610 * 1 2 3 27 27 H 1.08997 * 109.47170 * 239.99796 * 2 1 3 28 28 H 1.09006 * 109.46850 * 120.00013 * 2 1 3 29 29 H 1.08995 * 109.46874 * 64.31888 * 6 4 3 30 30 H 1.08997 * 109.47182 * 184.32812 * 6 4 3 31 31 H 1.09002 * 109.46852 * 304.32582 * 6 4 3 32 32 H 1.08994 * 109.47472 * 215.39904 * 10 9 7 33 33 H 1.09004 * 109.47331 * 335.40047 * 10 9 7 34 34 H 1.09003 * 109.46790 * 95.39572 * 10 9 7 35 35 H 1.08997 * 112.84599 * 294.73858 * 11 9 7 36 36 H 1.09000 * 113.61587 * 334.65707 * 12 11 9 37 37 H 1.08995 * 113.61559 * 203.74857 * 12 11 9 38 38 H 1.09005 * 113.61331 * 139.97715 * 13 12 11 39 39 H 0.97004 * 120.00059 * 20.68542 * 14 13 12 40 40 H 0.96997 * 119.99909 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.61265 * 89.15573 * 23 13 12 42 42 H 1.08998 * 113.61587 * 220.05534 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8632 0.6016 0.5147 6 6 3.9399 1.5002 -1.4418 7 6 3.8341 2.7264 0.7110 8 8 2.9928 3.5449 1.0161 9 7 5.1299 2.9496 1.0072 10 6 6.1585 2.0146 0.5446 11 6 5.5098 4.1271 1.7918 12 6 4.9868 4.0988 3.2376 13 6 6.2873 3.3674 3.6103 14 7 6.1942 1.9098 3.4965 15 6 7.0783 1.1124 4.1729 16 1 7.8445 1.5580 4.7901 17 6 6.9904 -0.2687 4.0646 18 7 6.0571 -0.8118 3.3121 19 14 8.1961 -1.3566 4.9879 20 1 7.6470 -1.6757 6.3302 21 1 8.4093 -2.6148 4.2285 22 1 9.4902 -0.6442 5.1390 23 6 6.9276 4.0414 2.3853 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.5691 2.3998 -1.9330 30 1 5.0298 1.5088 -1.4423 31 1 3.5832 0.6205 -1.9775 32 1 6.9435 1.9368 1.2968 33 1 5.7117 1.0336 0.3830 34 1 6.5857 2.3778 -0.3901 35 1 5.3084 5.0643 1.2729 36 1 4.0916 3.4904 3.3663 37 1 4.8969 5.0868 3.6888 38 1 6.7138 3.6914 4.5597 39 1 5.5063 1.5096 2.9419 40 1 5.9955 -1.7768 3.2367 41 1 7.3692 5.0138 2.6031 42 1 7.5970 3.3870 1.8270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701016326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:29 Heat of formation + Delta-G solvation = -52.827773 kcal Electronic energy + Delta-G solvation = -22446.628704 eV Core-core repulsion = 19234.896851 eV Total energy + Delta-G solvation = -3211.731853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.70670 -39.79761 -38.38186 -35.84993 -35.09848 -33.11016 -31.86474 -30.92535 -28.23763 -26.74196 -26.04033 -25.43161 -24.03933 -23.43129 -21.07441 -19.50571 -19.18201 -18.22532 -17.74179 -17.40897 -16.68906 -16.56083 -16.45775 -15.68817 -15.50035 -15.01927 -14.85592 -14.47079 -14.18315 -13.82847 -13.61557 -13.40078 -13.31277 -13.13015 -13.03966 -12.88000 -12.75630 -12.53081 -12.47269 -12.24331 -12.11103 -12.04413 -11.67918 -11.65347 -11.16572 -10.90555 -10.80064 -10.40383 -9.51504 -8.95115 -7.90723 -5.18407 1.50239 1.52039 1.54105 1.59212 1.81836 2.58093 2.82973 3.40553 3.43826 3.72136 3.79745 3.91423 3.93870 4.03591 4.16460 4.24833 4.31447 4.36261 4.40319 4.45350 4.58234 4.67538 4.75713 4.84386 4.85772 4.91117 4.95125 4.99685 5.07040 5.09321 5.18853 5.23332 5.35327 5.42828 5.55754 5.73011 6.10394 6.31757 6.43139 7.17126 7.38567 8.12459 8.38954 9.31717 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015290 B = 0.006872 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.867367 B = 4073.242237 C = 5176.761191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 O -0.387 6.387 4 C 0.071 3.929 5 H 0.085 0.915 6 C -0.162 4.162 7 C 0.511 3.489 8 O -0.571 6.571 9 N -0.582 5.582 10 C 0.070 3.930 11 C 0.125 3.875 12 C -0.157 4.157 13 C 0.145 3.855 14 N -0.716 5.716 15 C -0.241 4.241 16 H 0.076 0.924 17 C -0.064 4.064 18 N -0.960 5.960 19 Si 0.967 3.033 20 H -0.297 1.297 21 H -0.296 1.296 22 H -0.270 1.270 23 C -0.156 4.156 24 H 0.096 0.904 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.032 0.968 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.377 0.623 40 H 0.250 0.750 41 H 0.117 0.883 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.643 4.160 -9.614 10.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 O -0.306 6.306 4 C 0.010 3.990 5 H 0.102 0.898 6 C -0.219 4.219 7 C 0.299 3.701 8 O -0.450 6.450 9 N -0.315 5.315 10 C -0.072 4.072 11 C 0.022 3.978 12 C -0.196 4.196 13 C 0.035 3.965 14 N -0.355 5.355 15 C -0.373 4.373 16 H 0.094 0.906 17 C -0.257 4.257 18 N -0.610 5.610 19 Si 0.797 3.203 20 H -0.225 1.225 21 H -0.222 1.222 22 H -0.195 1.195 23 C -0.197 4.197 24 H 0.115 0.885 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.131 0.869 38 H 0.082 0.918 39 H 0.211 0.789 40 H 0.059 0.941 41 H 0.135 0.865 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.047 4.667 -9.334 10.634 hybrid contribution 0.253 -1.228 0.624 1.400 sum -1.793 3.439 -8.709 9.534 Atomic orbital electron populations 1.21734 0.92163 1.03573 1.02651 1.22814 0.96926 0.82471 1.00845 1.87953 1.19189 1.28258 1.95204 1.21943 0.83217 0.95480 0.98338 0.89773 1.22261 1.02943 1.04024 0.92681 1.20786 0.82110 0.88142 0.79020 1.90614 1.51149 1.48015 1.55239 1.47486 1.05992 1.25573 1.52458 1.22195 0.92375 0.92042 1.00620 1.21916 0.97516 0.87581 0.90757 1.23709 0.97555 1.01568 0.96803 1.21465 0.94602 0.83791 0.96639 1.42410 1.37035 1.00053 1.56022 1.19609 1.08129 0.88538 1.20984 0.90645 1.25385 1.00747 0.97814 1.01778 1.69782 1.36670 1.10021 1.44531 0.85242 0.79143 0.78432 0.77472 1.22474 1.22237 1.19516 1.24059 0.94224 1.02632 0.98744 0.88546 0.93255 0.91382 0.91054 0.94204 0.91831 0.89138 0.89432 0.89787 0.91211 0.90267 0.89654 0.94956 0.86947 0.91802 0.78940 0.94099 0.86463 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 10.28 71.98 0.74 -2.56 16 2 C 0.05 1.27 6.47 71.98 0.47 1.73 16 3 O -0.39 -13.77 9.54 -130.12 -1.24 -15.01 16 4 C 0.07 2.41 2.30 29.85 0.07 2.48 16 5 H 0.08 3.01 6.73 -2.38 -0.02 2.99 16 6 C -0.16 -4.03 9.20 71.98 0.66 -3.37 16 7 C 0.51 20.10 6.71 87.66 0.59 20.69 16 8 O -0.57 -26.44 15.94 15.83 0.25 -26.19 16 9 N -0.58 -20.57 2.17 -819.32 -1.78 -22.35 16 10 C 0.07 2.23 7.25 127.77 0.93 3.16 16 11 C 0.13 4.19 4.06 45.57 0.19 4.37 16 12 C -0.16 -5.72 7.20 31.12 0.22 -5.49 16 13 C 0.15 5.60 4.54 45.52 0.21 5.80 16 14 N -0.72 -34.21 3.71 -320.44 -1.19 -35.40 16 15 C -0.24 -12.56 9.98 84.03 0.84 -11.72 16 16 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 17 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 18 N -0.96 -54.32 13.06 21.65 0.28 -54.04 16 19 Si 0.97 43.95 29.55 68.60 2.03 45.98 16 20 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 21 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 23 C -0.16 -4.76 7.17 31.18 0.22 -4.54 16 24 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.61 7.79 -2.39 -0.02 1.60 16 28 H 0.04 1.21 8.09 -2.38 -0.02 1.19 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.99 5.59 -2.39 -0.01 1.98 16 31 H 0.09 1.81 7.79 -2.39 -0.02 1.79 16 32 H 0.08 3.13 4.57 -2.39 -0.01 3.12 16 33 H 0.07 2.32 5.46 -2.38 -0.01 2.30 16 34 H 0.08 1.96 7.67 -2.39 -0.02 1.94 16 35 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.03 1.42 7.56 -2.39 -0.02 1.40 16 37 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.06 2.41 8.12 -2.38 -0.02 2.39 16 39 H 0.38 19.41 6.05 -92.71 -0.56 18.85 16 40 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 41 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.08 2.44 5.82 -2.39 -0.01 2.43 16 Total: -1.00 -67.11 330.33 4.40 -62.71 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 0.45 Total: 36.75 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 5.60 Total: 7.56 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -2.68 Total: -111.79 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.99 Total: -41.21 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.11 4.40 -62.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701016326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.881 kcal (2) G-P(sol) polarization free energy of solvation -67.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds