Wall clock time and date at job start Mon Mar 30 2020 01:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47234 * 2 1 4 4 O 1.42899 * 109.46675 * 240.00196 * 2 1 3 5 5 C 1.53001 * 109.47096 * 120.00463 * 2 1 3 6 6 C 1.50699 * 109.47377 * 60.33245 * 5 2 1 7 7 O 1.21282 * 119.99965 * 6.09126 * 6 5 2 8 8 N 1.34776 * 120.00231 * 186.09125 * 6 5 2 9 9 C 1.46499 * 120.00432 * 180.02562 * 8 6 5 10 10 C 1.52990 * 109.47394 * 179.97438 * 9 8 6 11 11 H 1.08998 * 112.85032 * 316.19617 * 10 9 8 12 12 C 1.53786 * 113.61663 * 87.50040 * 10 9 8 13 13 C 1.53781 * 87.08048 * 139.97960 * 12 10 9 14 14 H 1.09000 * 113.68843 * 220.00519 * 13 12 10 15 15 N 1.46498 * 113.61395 * 89.11832 * 13 12 10 16 16 C 1.36943 * 119.99863 * 107.49859 * 15 13 12 17 17 H 1.07994 * 120.00140 * 0.02562 * 16 15 13 18 18 C 1.38821 * 119.99698 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99646 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 119.99970 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47370 * 90.00148 * 20 18 16 22 22 H 1.48500 * 109.47069 * 210.00135 * 20 18 16 23 23 H 1.48499 * 109.47368 * 329.99965 * 20 18 16 24 24 C 1.53778 * 87.08191 * 334.57019 * 13 12 10 25 25 H 1.08999 * 109.46474 * 299.99627 * 1 2 3 26 26 H 1.08996 * 109.46931 * 59.99828 * 1 2 3 27 27 H 1.08997 * 109.46895 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47195 * 182.80682 * 3 2 1 29 29 H 1.08997 * 109.47424 * 302.80813 * 3 2 1 30 30 H 1.08998 * 109.46725 * 62.80695 * 3 2 1 31 31 H 0.96701 * 114.00286 * 299.99602 * 4 2 1 32 32 H 1.09000 * 109.46955 * 300.32922 * 5 2 1 33 33 H 1.08995 * 109.47158 * 180.33225 * 5 2 1 34 34 H 0.97005 * 119.99633 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.47398 * 59.99181 * 9 8 6 36 36 H 1.09001 * 109.46893 * 300.00245 * 9 8 6 37 37 H 1.08999 * 113.61302 * 25.43447 * 12 10 9 38 38 H 1.08995 * 113.61577 * 254.53176 * 12 10 9 39 39 H 0.96995 * 120.00169 * 287.50490 * 15 13 12 40 40 H 0.96997 * 119.99283 * 180.02562 * 19 18 16 41 41 H 1.09000 * 113.61088 * 139.98369 * 24 13 12 42 42 H 1.09002 * 113.61482 * 270.87754 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7214 1.2492 6 6 1.5445 -2.1445 1.2450 7 8 0.9457 -2.5753 0.2823 8 7 1.7667 -2.9386 2.3111 9 6 1.2854 -4.3223 2.3068 10 6 1.6667 -4.9990 3.6249 11 1 2.6896 -4.7815 3.9320 12 6 0.6300 -4.7980 4.7430 13 6 0.8814 -6.2644 5.1319 14 1 -0.0234 -6.8050 5.4098 15 7 1.9672 -6.4369 6.1001 16 6 1.6815 -6.7723 7.3968 17 1 0.6558 -6.9100 7.7055 18 6 2.7103 -6.9352 8.3144 19 7 2.4357 -7.2580 9.5605 20 14 4.4844 -6.6963 7.7806 21 1 4.8721 -5.2757 7.9726 22 1 5.3685 -7.5655 8.5978 23 1 4.6229 -7.0578 6.3469 24 6 1.3135 -6.4948 3.6742 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1289 1.4429 -0.0503 29 1 1.6362 1.9707 -0.8637 30 1 1.7184 1.9415 0.9141 31 1 1.7210 -1.5952 -1.2330 32 1 1.6719 -0.2110 2.1392 33 1 3.1300 -0.7162 1.2522 34 1 2.2459 -2.5942 3.0809 35 1 1.7402 -4.8627 1.4766 36 1 0.2013 -4.3296 2.1945 37 1 -0.3786 -4.6107 4.3747 38 1 0.9427 -4.0843 5.5052 39 1 2.8884 -6.3135 5.8229 40 1 3.1547 -7.3715 10.2016 41 1 2.1780 -7.1511 3.5737 42 1 0.4918 -6.7715 3.0137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707083617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:48 Heat of formation + Delta-G solvation = -68.325491 kcal Electronic energy + Delta-G solvation = -20831.233460 eV Core-core repulsion = 17618.829575 eV Total energy + Delta-G solvation = -3212.403885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.49795 -38.96018 -37.48861 -34.84298 -33.35988 -32.85669 -30.80362 -29.29900 -27.55150 -26.92295 -25.24581 -23.51699 -21.90296 -21.14097 -20.38404 -18.67710 -17.73657 -17.25485 -16.96376 -16.10125 -15.80040 -15.12572 -15.02861 -14.55188 -14.47538 -14.00531 -13.66935 -13.30732 -13.02001 -12.77531 -12.62699 -12.45728 -12.41612 -12.12141 -12.06842 -11.78040 -11.57540 -11.42829 -11.19572 -10.97680 -10.58847 -10.37957 -10.17691 -10.15956 -9.88257 -9.70907 -9.57716 -9.18186 -8.97490 -7.36744 -5.85339 -3.21878 2.37293 3.00264 3.29851 3.32076 3.38689 4.05963 4.33118 4.48488 4.50483 4.72318 4.82524 4.85326 4.94797 5.04141 5.10976 5.24214 5.32200 5.34747 5.37172 5.42900 5.54286 5.65323 5.69063 5.71476 5.77816 5.83826 5.90795 6.05061 6.08420 6.16892 6.25641 6.41480 6.54818 6.66174 6.81939 7.28799 7.60458 7.92351 8.03815 8.34352 9.11848 9.83995 10.03016 11.32753 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031717 B = 0.003262 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.582129 B = 8582.679304 C = 8922.387260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.146 3.854 3 C -0.140 4.140 4 O -0.569 6.569 5 C -0.174 4.174 6 C 0.516 3.484 7 O -0.550 6.550 8 N -0.721 5.721 9 C 0.129 3.871 10 C -0.124 4.124 11 H 0.089 0.911 12 C -0.167 4.167 13 C 0.173 3.827 14 H 0.071 0.929 15 N -0.730 5.730 16 C -0.248 4.248 17 H 0.092 0.908 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.149 4.149 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.388 0.612 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.403 0.597 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.362 0.638 40 H 0.261 0.739 41 H 0.067 0.933 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 14.128 -17.803 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.104 3.896 3 C -0.197 4.197 4 O -0.381 6.381 5 C -0.215 4.215 6 C 0.303 3.697 7 O -0.430 6.430 8 N -0.371 5.371 9 C 0.006 3.994 10 C -0.143 4.143 11 H 0.108 0.892 12 C -0.207 4.207 13 C 0.061 3.939 14 H 0.089 0.911 15 N -0.370 5.370 16 C -0.378 4.378 17 H 0.110 0.890 18 C -0.190 4.190 19 N -0.578 5.578 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.189 4.189 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.242 0.758 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.238 0.762 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.195 0.805 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.646 14.268 -18.323 23.282 hybrid contribution 1.363 -0.181 0.381 1.426 sum -0.284 14.087 -17.943 22.813 Atomic orbital electron populations 1.22661 0.95482 1.04350 1.02069 1.20807 0.93107 0.92043 0.83601 1.21778 1.01939 0.93474 1.02542 1.86394 1.77259 1.31221 1.43202 1.22530 1.03723 0.93319 1.01890 1.20651 0.78782 0.87751 0.82497 1.90511 1.42292 1.75866 1.34312 1.46125 1.58230 1.13466 1.19300 1.21502 0.99434 0.80350 0.98117 1.22756 1.00317 0.97197 0.94002 0.89244 1.23862 0.97234 1.02224 0.97419 1.20999 0.92314 0.93119 0.87483 0.91057 1.42517 1.02931 1.83812 1.07749 1.19114 0.95189 1.39734 0.83745 0.89014 1.24690 0.97434 1.01435 0.95466 1.69698 1.31551 1.54018 1.02580 0.86561 0.86446 0.77835 0.77738 1.21047 1.21595 1.20341 1.23466 1.01526 0.94256 0.99604 0.92270 0.92031 0.90094 0.91829 0.91603 0.91159 0.75847 0.88055 0.87936 0.76218 0.91676 0.91291 0.90940 0.91303 0.80526 0.92938 0.91408 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 8.51 37.16 0.32 -1.46 16 2 C 0.15 1.37 1.11 -90.62 -0.10 1.27 16 3 C -0.14 -1.05 8.84 37.16 0.33 -0.73 16 4 O -0.57 -6.80 12.95 -54.92 -0.71 -7.51 16 5 C -0.17 -1.43 4.98 -27.88 -0.14 -1.57 16 6 C 0.52 5.54 7.29 -10.99 -0.08 5.46 16 7 O -0.55 -7.32 11.77 -14.14 -0.17 -7.49 16 8 N -0.72 -7.33 5.56 -60.30 -0.33 -7.66 16 9 C 0.13 1.49 5.51 -4.05 -0.02 1.47 16 10 C -0.12 -1.61 3.63 -89.81 -0.33 -1.94 16 11 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 12 C -0.17 -2.48 7.43 -25.92 -0.19 -2.68 16 13 C 0.17 3.10 4.56 -67.12 -0.31 2.79 16 14 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 15 N -0.73 -16.45 5.11 -52.64 -0.27 -16.72 16 16 C -0.25 -6.78 10.45 -15.05 -0.16 -6.94 16 17 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 19 N -0.93 -28.66 13.97 55.49 0.78 -27.89 16 20 Si 0.88 21.40 27.74 -169.99 -4.71 16.68 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 24 C -0.15 -2.13 7.39 -25.92 -0.19 -2.32 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.92 5.77 -51.93 -0.30 0.62 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.39 4.69 6.31 45.56 0.29 4.97 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.40 3.43 8.47 -40.82 -0.35 3.08 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.83 7.85 -51.93 -0.41 0.43 16 37 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.36 7.98 5.76 -40.82 -0.24 7.74 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -31.59 337.20 -7.80 -39.39 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -6.49 Total: 12.67 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.97 Total: -6.57 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.17 Total: -52.26 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.88 Total: -15.00 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.59 -7.80 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707083617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.933 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds