Wall clock time and date at job start Mon Mar 30 2020 01:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47234 * 2 1 4 4 O 1.42899 * 109.46675 * 240.00196 * 2 1 3 5 5 C 1.53001 * 109.47096 * 120.00463 * 2 1 3 6 6 C 1.50699 * 109.47377 * 60.33245 * 5 2 1 7 7 O 1.21282 * 119.99965 * 6.09126 * 6 5 2 8 8 N 1.34776 * 120.00231 * 186.09125 * 6 5 2 9 9 C 1.46499 * 120.00432 * 180.02562 * 8 6 5 10 10 C 1.52990 * 109.47394 * 179.97438 * 9 8 6 11 11 H 1.08998 * 112.85032 * 316.19617 * 10 9 8 12 12 C 1.53786 * 113.61663 * 87.50040 * 10 9 8 13 13 C 1.53781 * 87.08048 * 139.97960 * 12 10 9 14 14 H 1.09000 * 113.68843 * 220.00519 * 13 12 10 15 15 N 1.46498 * 113.61395 * 89.11832 * 13 12 10 16 16 C 1.36943 * 119.99863 * 107.49859 * 15 13 12 17 17 H 1.07994 * 120.00140 * 0.02562 * 16 15 13 18 18 C 1.38821 * 119.99698 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99646 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 119.99970 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47370 * 90.00148 * 20 18 16 22 22 H 1.48500 * 109.47069 * 210.00135 * 20 18 16 23 23 H 1.48499 * 109.47368 * 329.99965 * 20 18 16 24 24 C 1.53778 * 87.08191 * 334.57019 * 13 12 10 25 25 H 1.08999 * 109.46474 * 299.99627 * 1 2 3 26 26 H 1.08996 * 109.46931 * 59.99828 * 1 2 3 27 27 H 1.08997 * 109.46895 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47195 * 182.80682 * 3 2 1 29 29 H 1.08997 * 109.47424 * 302.80813 * 3 2 1 30 30 H 1.08998 * 109.46725 * 62.80695 * 3 2 1 31 31 H 0.96701 * 114.00286 * 299.99602 * 4 2 1 32 32 H 1.09000 * 109.46955 * 300.32922 * 5 2 1 33 33 H 1.08995 * 109.47158 * 180.33225 * 5 2 1 34 34 H 0.97005 * 119.99633 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.47398 * 59.99181 * 9 8 6 36 36 H 1.09001 * 109.46893 * 300.00245 * 9 8 6 37 37 H 1.08999 * 113.61302 * 25.43447 * 12 10 9 38 38 H 1.08995 * 113.61577 * 254.53176 * 12 10 9 39 39 H 0.96995 * 120.00169 * 287.50490 * 15 13 12 40 40 H 0.96997 * 119.99283 * 180.02562 * 19 18 16 41 41 H 1.09000 * 113.61088 * 139.98369 * 24 13 12 42 42 H 1.09002 * 113.61482 * 270.87754 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7214 1.2492 6 6 1.5445 -2.1445 1.2450 7 8 0.9457 -2.5753 0.2823 8 7 1.7667 -2.9386 2.3111 9 6 1.2854 -4.3223 2.3068 10 6 1.6667 -4.9990 3.6249 11 1 2.6896 -4.7815 3.9320 12 6 0.6300 -4.7980 4.7430 13 6 0.8814 -6.2644 5.1319 14 1 -0.0234 -6.8050 5.4098 15 7 1.9672 -6.4369 6.1001 16 6 1.6815 -6.7723 7.3968 17 1 0.6558 -6.9100 7.7055 18 6 2.7103 -6.9352 8.3144 19 7 2.4357 -7.2580 9.5605 20 14 4.4844 -6.6963 7.7806 21 1 4.8721 -5.2757 7.9726 22 1 5.3685 -7.5655 8.5978 23 1 4.6229 -7.0578 6.3469 24 6 1.3135 -6.4948 3.6742 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1289 1.4429 -0.0503 29 1 1.6362 1.9707 -0.8637 30 1 1.7184 1.9415 0.9141 31 1 1.7210 -1.5952 -1.2330 32 1 1.6719 -0.2110 2.1392 33 1 3.1300 -0.7162 1.2522 34 1 2.2459 -2.5942 3.0809 35 1 1.7402 -4.8627 1.4766 36 1 0.2013 -4.3296 2.1945 37 1 -0.3786 -4.6107 4.3747 38 1 0.9427 -4.0843 5.5052 39 1 2.8884 -6.3135 5.8229 40 1 3.1547 -7.3715 10.2016 41 1 2.1780 -7.1511 3.5737 42 1 0.4918 -6.7715 3.0137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707083617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:47 Heat of formation + Delta-G solvation = -91.385539 kcal Electronic energy + Delta-G solvation = -20832.233419 eV Core-core repulsion = 17618.829575 eV Total energy + Delta-G solvation = -3213.403844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33351 -40.17351 -38.32370 -36.03134 -34.98510 -33.66997 -32.66985 -30.20237 -28.20059 -27.95571 -26.46381 -25.33635 -23.21184 -21.94340 -21.17968 -20.11771 -19.56610 -18.10725 -17.78084 -17.00669 -16.66315 -16.59532 -16.15571 -15.79361 -15.49749 -15.11192 -15.05354 -14.64358 -14.25936 -14.09000 -13.55770 -13.34479 -13.18485 -13.06817 -13.03415 -12.97570 -12.76763 -12.66706 -12.42431 -12.24841 -11.90969 -11.89382 -11.65212 -11.50699 -11.01943 -10.92698 -10.90718 -10.63970 -10.05178 -9.30361 -8.03299 -5.37135 1.37322 1.41230 1.48774 1.58104 2.20797 2.47792 3.27191 3.36042 3.50742 3.61477 3.71906 3.76614 3.91478 4.01081 4.07651 4.26602 4.29449 4.37680 4.55112 4.63974 4.70850 4.76903 4.77366 4.92010 4.92366 4.97054 5.02047 5.06361 5.09054 5.25508 5.28393 5.32157 5.41162 5.51764 5.55160 5.80308 6.22136 6.52064 6.77680 7.07335 7.25109 7.84106 8.02687 9.18280 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031717 B = 0.003262 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.582129 B = 8582.679304 C = 8922.387260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.135 3.865 3 C -0.139 4.139 4 O -0.586 6.586 5 C -0.167 4.167 6 C 0.512 3.488 7 O -0.578 6.578 8 N -0.717 5.717 9 C 0.138 3.862 10 C -0.105 4.105 11 H 0.090 0.910 12 C -0.153 4.153 13 C 0.144 3.856 14 H 0.056 0.944 15 N -0.734 5.734 16 C -0.233 4.233 17 H 0.056 0.944 18 C -0.066 4.066 19 N -0.985 5.985 20 Si 0.957 3.043 21 H -0.275 1.275 22 H -0.298 1.298 23 H -0.251 1.251 24 C -0.135 4.135 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.384 0.616 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.413 0.587 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.367 0.633 40 H 0.258 0.742 41 H 0.065 0.935 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 15.728 -19.496 25.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.095 3.905 3 C -0.196 4.196 4 O -0.398 6.398 5 C -0.207 4.207 6 C 0.301 3.699 7 O -0.460 6.460 8 N -0.367 5.367 9 C 0.014 3.986 10 C -0.123 4.123 11 H 0.109 0.891 12 C -0.194 4.194 13 C 0.034 3.966 14 H 0.074 0.926 15 N -0.376 5.376 16 C -0.364 4.364 17 H 0.074 0.926 18 C -0.257 4.257 19 N -0.635 5.635 20 Si 0.784 3.216 21 H -0.201 1.201 22 H -0.225 1.225 23 H -0.175 1.175 24 C -0.174 4.174 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.237 0.763 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.250 0.750 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.201 0.799 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.522 15.899 -20.072 25.612 hybrid contribution 0.842 -0.687 0.886 1.402 sum 0.320 15.213 -19.187 24.488 Atomic orbital electron populations 1.22615 0.95760 1.03108 1.02747 1.21084 0.93066 0.92996 0.83396 1.21807 1.01989 0.92210 1.03556 1.86384 1.77583 1.31093 1.44756 1.22531 1.04442 0.91504 1.02247 1.21107 0.78216 0.88655 0.81949 1.90512 1.43573 1.76554 1.35376 1.46056 1.58115 1.12880 1.19678 1.21293 0.99281 0.81075 0.96916 1.22569 0.99650 0.96195 0.93909 0.89145 1.23697 0.99009 0.98996 0.97675 1.21353 0.90899 0.95500 0.88804 0.92624 1.42433 1.04324 1.84143 1.06670 1.19065 0.93595 1.37841 0.85909 0.92631 1.25542 1.02483 1.02250 0.95439 1.69891 1.32908 1.56539 1.04178 0.85385 0.79938 0.77837 0.78456 1.20083 1.22513 1.17531 1.23366 1.02174 0.95269 0.96585 0.90588 0.92383 0.92191 0.91682 0.92087 0.88872 0.76309 0.85467 0.86627 0.75050 0.91687 0.91560 0.89125 0.92732 0.79943 0.93324 0.91630 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.51 71.98 0.61 -2.59 16 2 C 0.14 2.27 1.11 -10.79 -0.01 2.26 16 3 C -0.14 -1.73 8.84 71.98 0.64 -1.09 16 4 O -0.59 -13.46 12.95 -130.15 -1.69 -15.14 16 5 C -0.17 -2.24 4.98 29.85 0.15 -2.09 16 6 C 0.51 9.79 7.29 87.66 0.64 10.43 16 7 O -0.58 -14.63 11.77 15.79 0.19 -14.44 16 8 N -0.72 -12.44 5.56 -463.08 -2.57 -15.01 16 9 C 0.14 2.78 5.51 86.38 0.48 3.25 16 10 C -0.10 -2.41 3.63 -10.27 -0.04 -2.44 16 11 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 12 C -0.15 -4.26 7.43 31.12 0.23 -4.03 16 13 C 0.14 5.01 4.56 45.52 0.21 5.21 16 14 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 15 N -0.73 -32.45 5.11 -320.45 -1.64 -34.09 16 16 C -0.23 -12.97 10.45 84.03 0.88 -12.09 16 17 H 0.06 3.42 8.06 -2.91 -0.02 3.39 16 18 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 19 N -0.98 -62.39 13.97 21.65 0.30 -62.09 16 20 Si 0.96 43.96 27.74 68.60 1.90 45.87 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16 24 C -0.13 -3.49 7.39 31.12 0.23 -3.26 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.31 5.77 -2.39 -0.01 1.30 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.38 9.16 6.31 -74.06 -0.47 8.69 16 32 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.41 5.60 8.47 -92.70 -0.79 4.81 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.41 7.85 -2.39 -0.02 1.39 16 37 H 0.09 2.21 7.90 -2.39 -0.02 2.19 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.37 15.37 5.76 -92.71 -0.53 14.84 16 40 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.11 2.27 8.10 -2.39 -0.02 2.25 16 Total: -1.00 -70.08 337.20 0.15 -69.93 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: -0.82 Total: 34.74 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 4.48 Total: -9.77 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -3.91 Total: -111.19 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -1.50 Total: -29.59 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.90 Total: 45.87 kcal Total: -70.08 0.15 -69.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707083617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.452 kcal (2) G-P(sol) polarization free energy of solvation -70.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds