Wall clock time and date at job start Mon Mar 30 2020 00:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47090 * 2 1 4 4 C 1.36938 * 120.00157 * 265.78676 * 3 2 1 5 5 H 1.08003 * 119.99832 * 146.20783 * 4 3 2 6 6 C 1.38816 * 120.00252 * 326.21931 * 4 3 2 7 7 N 1.31617 * 119.99710 * 337.68094 * 6 4 3 8 8 Si 1.86792 * 120.00002 * 157.68607 * 6 4 3 9 9 H 1.48506 * 109.47370 * 59.99758 * 8 6 4 10 10 H 1.48504 * 109.46916 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47381 * 299.99880 * 8 6 4 12 12 C 1.46497 * 119.99798 * 85.78937 * 3 2 1 13 13 C 1.53002 * 109.47265 * 89.99973 * 12 3 2 14 14 C 1.52996 * 109.47322 * 179.97438 * 13 12 3 15 15 N 1.46497 * 109.47139 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00285 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99706 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00407 * 180.02562 * 16 15 14 19 19 H 1.08998 * 110.56328 * 302.68043 * 18 16 15 20 20 C 1.54512 * 110.51434 * 180.02562 * 18 16 15 21 21 C 1.54477 * 104.18186 * 241.28965 * 20 18 16 22 22 O 1.44639 * 104.69657 * 336.18189 * 21 20 18 23 23 C 1.44427 * 105.36838 * 40.35372 * 22 21 20 24 24 H 1.09002 * 109.47051 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46860 * 299.99681 * 1 2 3 26 26 H 1.08996 * 109.47469 * 59.99815 * 1 2 3 27 27 H 1.09000 * 109.47257 * 240.00671 * 2 1 3 28 28 H 1.08996 * 109.47469 * 120.00185 * 2 1 3 29 29 H 0.97001 * 119.99882 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47240 * 329.99905 * 12 3 2 31 31 H 1.08999 * 109.47349 * 209.99867 * 12 3 2 32 32 H 1.09002 * 109.47047 * 59.99813 * 13 12 3 33 33 H 1.08993 * 109.47252 * 300.00264 * 13 12 3 34 34 H 1.09002 * 109.46898 * 60.00106 * 14 13 12 35 35 H 1.08999 * 109.47635 * 300.00104 * 14 13 12 36 36 H 0.96999 * 120.00203 * 0.02562 * 15 14 13 37 37 H 1.09005 * 110.51092 * 359.97438 * 20 18 16 38 38 H 1.08993 * 110.51664 * 122.57077 * 20 18 16 39 39 H 1.08998 * 110.37923 * 94.92177 * 21 20 18 40 40 H 1.09007 * 110.37187 * 217.25599 * 21 20 18 41 41 H 1.09003 * 110.37163 * 200.73443 * 23 22 21 42 42 H 1.08994 * 110.37166 * 78.39441 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3287 1.9978 -1.1827 5 1 2.1594 3.0580 -1.2997 6 6 2.8607 1.2600 -2.2314 7 7 3.4696 0.1184 -1.9903 8 14 2.7124 1.8876 -3.9844 9 1 3.3848 3.2069 -4.0965 10 1 3.3574 0.9234 -4.9116 11 1 1.2775 2.0318 -4.3389 12 6 2.1746 2.1028 1.2653 13 6 3.5854 1.8745 1.8117 14 6 3.7488 2.6287 3.1329 15 7 5.0994 2.4096 3.6563 16 6 5.4724 2.9803 4.8189 17 8 4.6897 3.6749 5.4320 18 6 6.8619 2.7553 5.3572 19 1 7.0545 1.6904 5.4869 20 6 7.0529 3.5063 6.6939 21 6 8.1993 4.5016 6.4084 22 8 8.9256 3.9174 5.3024 23 6 7.9145 3.3858 4.4186 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8411 -0.3973 -2.7231 30 1 1.4425 1.7369 1.9852 31 1 2.0180 3.1684 1.0977 32 1 4.3175 2.2405 1.0919 33 1 3.7421 0.8090 1.9794 34 1 3.0167 2.2630 3.8529 35 1 3.5924 3.6942 2.9649 36 1 5.7253 1.8537 3.1662 37 1 6.1424 4.0407 6.9653 38 1 7.3377 2.8124 7.4846 39 1 7.7961 5.4740 6.1255 40 1 8.8451 4.5972 7.2814 41 1 8.3433 2.6264 3.7648 42 1 7.4668 4.1861 3.8295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707450227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:01 Heat of formation + Delta-G solvation = -76.452387 kcal Electronic energy + Delta-G solvation = -20818.498014 eV Core-core repulsion = 17605.741721 eV Total energy + Delta-G solvation = -3212.756293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43906 -38.51330 -36.45045 -34.94018 -32.61367 -31.89544 -30.96584 -29.57374 -28.51152 -25.44366 -23.79849 -23.26006 -22.24737 -21.41789 -20.21729 -19.52532 -17.60916 -16.80576 -16.66278 -15.78584 -15.71061 -15.22943 -15.07051 -14.72788 -14.23657 -13.91049 -13.67221 -13.30853 -13.10315 -12.49635 -12.38153 -12.29906 -11.74148 -11.71607 -11.52397 -11.48409 -11.11194 -11.00419 -10.97531 -10.73404 -10.68105 -10.29410 -10.08963 -9.99303 -9.81366 -9.75586 -9.58619 -8.97166 -8.49844 -6.65166 -5.81652 -3.34739 2.56437 3.15850 3.35313 3.41333 3.44069 3.74015 4.18718 4.46248 4.52791 4.65377 4.84327 4.98538 5.07256 5.26094 5.30220 5.40784 5.47612 5.49515 5.54165 5.71071 5.78898 5.81160 5.91904 6.14859 6.23103 6.29687 6.45854 6.46585 6.52779 6.58590 6.69761 6.85105 6.88197 7.06718 7.26084 7.53744 7.73443 7.79518 8.19695 8.47998 9.16813 9.80597 10.36641 11.18958 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.003494 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.832286 B = 8010.701652 C = 8716.371236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 N -0.585 5.585 4 C -0.258 4.258 5 H 0.062 0.938 6 C 0.009 3.991 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.152 3.848 13 C -0.147 4.147 14 C 0.118 3.882 15 N -0.722 5.722 16 C 0.517 3.483 17 O -0.543 6.543 18 C -0.147 4.147 19 H 0.109 0.891 20 C -0.147 4.147 21 C 0.044 3.956 22 O -0.374 6.374 23 C 0.057 3.943 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.018 0.982 29 H 0.254 0.746 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.402 0.598 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.656 3.002 13.640 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.305 5.305 4 C -0.387 4.387 5 H 0.079 0.921 6 C -0.191 4.191 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.210 1.210 12 C 0.025 3.975 13 C -0.187 4.187 14 C -0.005 4.005 15 N -0.372 5.372 16 C 0.302 3.698 17 O -0.420 6.420 18 C -0.169 4.169 19 H 0.128 0.872 20 C -0.184 4.184 21 C -0.032 4.032 22 O -0.292 6.292 23 C -0.020 4.020 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.236 0.764 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.378 3.376 13.906 15.667 hybrid contribution 0.041 -0.140 -1.164 1.173 sum 6.419 3.236 12.742 14.630 Atomic orbital electron populations 1.22315 1.00952 0.98677 1.00387 1.20948 0.89761 0.86479 1.01693 1.43911 1.73914 1.11797 1.00863 1.19069 1.35932 0.94001 0.89725 0.92083 1.25069 0.97045 0.97889 0.99108 1.69971 1.36553 1.15854 1.30868 0.86460 0.77977 0.78105 0.84794 1.20779 1.21643 1.20959 1.20780 0.91861 0.96374 0.88495 1.22492 1.02903 0.99647 0.93681 1.21560 0.81987 1.00792 0.96199 1.46190 1.16433 1.51434 1.23153 1.20280 0.88918 0.79573 0.81002 1.90668 1.53895 1.38903 1.58580 1.22728 0.93489 1.03304 0.97350 0.87242 1.22954 1.00918 0.98715 0.95852 1.23508 0.93292 0.96307 0.90127 1.89158 1.29422 1.76323 1.34310 1.23368 0.88039 0.98164 0.92445 0.94734 0.94901 0.93281 0.88356 0.96308 0.93558 0.94558 0.93730 0.91082 0.92228 0.92023 0.91803 0.76378 0.88021 0.90237 0.91965 0.88823 0.88028 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 10.24 37.16 0.38 -2.91 16 2 C 0.14 3.17 5.97 -4.04 -0.02 3.14 16 3 N -0.58 -14.02 2.45 -173.24 -0.43 -14.44 16 4 C -0.26 -6.82 9.49 -15.06 -0.14 -6.96 16 5 H 0.06 1.62 7.92 -52.48 -0.42 1.20 16 6 C 0.01 0.23 4.93 -17.43 -0.09 0.14 16 7 N -0.89 -24.68 11.32 55.49 0.63 -24.06 16 8 Si 0.90 21.11 29.61 -169.99 -5.03 16.08 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.15 3.03 5.69 -4.04 -0.02 3.01 16 13 C -0.15 -2.57 5.65 -26.73 -0.15 -2.73 16 14 C 0.12 1.77 5.67 -4.05 -0.02 1.75 16 15 N -0.72 -9.31 5.55 -60.30 -0.33 -9.64 16 16 C 0.52 6.85 7.01 -10.99 -0.08 6.78 16 17 O -0.54 -9.09 15.28 5.55 0.08 -9.01 16 18 C -0.15 -1.48 3.51 -90.20 -0.32 -1.80 16 19 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 20 C -0.15 -1.41 6.67 -25.16 -0.17 -1.57 16 21 C 0.04 0.41 7.65 37.93 0.29 0.70 16 22 O -0.37 -4.21 11.65 -35.23 -0.41 -4.62 16 23 C 0.06 0.57 7.17 37.93 0.27 0.84 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.10 2.58 5.32 -51.93 -0.28 2.30 16 28 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 29 H 0.25 6.86 8.31 -40.82 -0.34 6.53 16 30 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 31 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.40 4.41 8.47 -40.82 -0.35 4.06 16 37 H 0.10 1.14 6.50 -51.93 -0.34 0.80 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -30.30 343.14 -7.64 -37.93 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.25 Total: 2.19 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.07 Total: 0.39 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.13 Total: -48.14 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.33 Total: -13.63 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.30 -7.64 -37.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707450227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.518 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds