Wall clock time and date at job start Mon Mar 30 2020 00:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47090 * 2 1 4 4 C 1.36938 * 120.00157 * 265.78676 * 3 2 1 5 5 H 1.08003 * 119.99832 * 146.20783 * 4 3 2 6 6 C 1.38816 * 120.00252 * 326.21931 * 4 3 2 7 7 N 1.31617 * 119.99710 * 337.68094 * 6 4 3 8 8 Si 1.86792 * 120.00002 * 157.68607 * 6 4 3 9 9 H 1.48506 * 109.47370 * 59.99758 * 8 6 4 10 10 H 1.48504 * 109.46916 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47381 * 299.99880 * 8 6 4 12 12 C 1.46497 * 119.99798 * 85.78937 * 3 2 1 13 13 C 1.53002 * 109.47265 * 89.99973 * 12 3 2 14 14 C 1.52996 * 109.47322 * 179.97438 * 13 12 3 15 15 N 1.46497 * 109.47139 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00285 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99706 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00407 * 180.02562 * 16 15 14 19 19 H 1.08998 * 110.56328 * 302.68043 * 18 16 15 20 20 C 1.54512 * 110.51434 * 180.02562 * 18 16 15 21 21 C 1.54477 * 104.18186 * 241.28965 * 20 18 16 22 22 O 1.44639 * 104.69657 * 336.18189 * 21 20 18 23 23 C 1.44427 * 105.36838 * 40.35372 * 22 21 20 24 24 H 1.09002 * 109.47051 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46860 * 299.99681 * 1 2 3 26 26 H 1.08996 * 109.47469 * 59.99815 * 1 2 3 27 27 H 1.09000 * 109.47257 * 240.00671 * 2 1 3 28 28 H 1.08996 * 109.47469 * 120.00185 * 2 1 3 29 29 H 0.97001 * 119.99882 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47240 * 329.99905 * 12 3 2 31 31 H 1.08999 * 109.47349 * 209.99867 * 12 3 2 32 32 H 1.09002 * 109.47047 * 59.99813 * 13 12 3 33 33 H 1.08993 * 109.47252 * 300.00264 * 13 12 3 34 34 H 1.09002 * 109.46898 * 60.00106 * 14 13 12 35 35 H 1.08999 * 109.47635 * 300.00104 * 14 13 12 36 36 H 0.96999 * 120.00203 * 0.02562 * 15 14 13 37 37 H 1.09005 * 110.51092 * 359.97438 * 20 18 16 38 38 H 1.08993 * 110.51664 * 122.57077 * 20 18 16 39 39 H 1.08998 * 110.37923 * 94.92177 * 21 20 18 40 40 H 1.09007 * 110.37187 * 217.25599 * 21 20 18 41 41 H 1.09003 * 110.37163 * 200.73443 * 23 22 21 42 42 H 1.08994 * 110.37166 * 78.39441 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3287 1.9978 -1.1827 5 1 2.1594 3.0580 -1.2997 6 6 2.8607 1.2600 -2.2314 7 7 3.4696 0.1184 -1.9903 8 14 2.7124 1.8876 -3.9844 9 1 3.3848 3.2069 -4.0965 10 1 3.3574 0.9234 -4.9116 11 1 1.2775 2.0318 -4.3389 12 6 2.1746 2.1028 1.2653 13 6 3.5854 1.8745 1.8117 14 6 3.7488 2.6287 3.1329 15 7 5.0994 2.4096 3.6563 16 6 5.4724 2.9803 4.8189 17 8 4.6897 3.6749 5.4320 18 6 6.8619 2.7553 5.3572 19 1 7.0545 1.6904 5.4869 20 6 7.0529 3.5063 6.6939 21 6 8.1993 4.5016 6.4084 22 8 8.9256 3.9174 5.3024 23 6 7.9145 3.3858 4.4186 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8411 -0.3973 -2.7231 30 1 1.4425 1.7369 1.9852 31 1 2.0180 3.1684 1.0977 32 1 4.3175 2.2405 1.0919 33 1 3.7421 0.8090 1.9794 34 1 3.0167 2.2630 3.8529 35 1 3.5924 3.6942 2.9649 36 1 5.7253 1.8537 3.1662 37 1 6.1424 4.0407 6.9653 38 1 7.3377 2.8124 7.4846 39 1 7.7961 5.4740 6.1255 40 1 8.8451 4.5972 7.2814 41 1 8.3433 2.6264 3.7648 42 1 7.4668 4.1861 3.8295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707450227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:00 Heat of formation + Delta-G solvation = -96.133727 kcal Electronic energy + Delta-G solvation = -20819.351461 eV Core-core repulsion = 17605.741721 eV Total energy + Delta-G solvation = -3213.609740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40600 -39.46740 -38.13678 -36.30513 -33.88139 -33.31349 -32.51599 -30.67997 -29.91111 -27.05555 -25.28352 -24.33515 -23.38372 -22.71769 -21.72578 -20.76791 -18.60384 -18.56711 -17.60941 -17.04511 -16.73123 -16.59298 -16.20749 -16.15318 -15.68927 -15.42699 -15.09220 -14.59131 -14.18445 -14.01966 -13.90616 -13.31524 -13.25058 -13.06996 -12.81723 -12.75157 -12.48969 -12.43733 -12.34887 -12.27665 -12.06691 -11.82032 -11.77813 -11.49532 -11.36843 -10.93739 -10.87536 -10.48322 -10.13583 -8.59239 -7.81334 -5.37678 1.47425 1.50506 1.51526 1.56318 2.12062 2.53131 2.96487 3.26324 3.38873 3.65647 3.74988 3.82766 4.08666 4.13598 4.22891 4.26930 4.34162 4.50181 4.58029 4.67860 4.69769 4.73424 4.80162 4.83574 4.89245 4.96091 4.99226 5.01442 5.03530 5.16701 5.33982 5.40470 5.52772 5.53072 5.69149 5.70492 5.90578 6.47960 6.49318 7.15021 7.19245 7.90358 8.40318 9.15476 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.003494 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.832286 B = 8010.701652 C = 8716.371236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 N -0.600 5.600 4 C -0.267 4.267 5 H 0.056 0.944 6 C -0.035 4.035 7 N -0.914 5.914 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.283 1.283 12 C 0.148 3.852 13 C -0.125 4.125 14 C 0.132 3.868 15 N -0.716 5.716 16 C 0.518 3.482 17 O -0.580 6.580 18 C -0.140 4.140 19 H 0.135 0.865 20 C -0.145 4.145 21 C 0.042 3.958 22 O -0.389 6.389 23 C 0.057 3.943 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.251 0.749 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.413 0.587 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 2.816 14.547 16.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.322 5.322 4 C -0.397 4.397 5 H 0.073 0.927 6 C -0.232 4.232 7 N -0.558 5.558 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.219 1.219 11 H -0.209 1.209 12 C 0.021 3.979 13 C -0.166 4.166 14 C 0.007 3.993 15 N -0.367 5.367 16 C 0.305 3.695 17 O -0.460 6.460 18 C -0.161 4.161 19 H 0.152 0.848 20 C -0.183 4.183 21 C -0.035 4.035 22 O -0.308 6.308 23 C -0.021 4.021 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.249 0.751 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.768 3.192 14.822 16.604 hybrid contribution -0.100 -0.059 -1.386 1.391 sum 6.668 3.133 13.436 15.323 Atomic orbital electron populations 1.22149 0.98551 1.00188 1.00197 1.20892 0.91648 0.86014 1.00515 1.44097 1.74377 1.12142 1.01537 1.19261 1.35351 0.93955 0.91144 0.92677 1.25660 0.97244 0.98296 1.02009 1.70088 1.37579 1.16843 1.31341 0.85582 0.77689 0.77595 0.81026 1.20272 1.21868 1.20894 1.20897 0.93587 0.95958 0.87447 1.22137 1.00731 0.99389 0.94295 1.21243 0.83344 0.99863 0.94808 1.46085 1.15829 1.51533 1.23297 1.20804 0.89847 0.78508 0.80383 1.90657 1.55302 1.40478 1.59577 1.22760 0.91083 1.04903 0.97400 0.84753 1.22960 1.00209 0.99010 0.96149 1.23635 0.93538 0.95867 0.90418 1.89147 1.30143 1.76528 1.34945 1.23435 0.87887 0.98319 0.92416 0.92404 0.93440 0.94980 0.91461 0.95548 0.93990 0.92741 0.93847 0.93342 0.92794 0.91744 0.92430 0.75098 0.89839 0.88241 0.92485 0.86654 0.86062 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.86 10.24 71.98 0.74 -5.12 16 2 C 0.14 6.17 5.97 86.38 0.52 6.69 16 3 N -0.60 -28.64 2.45 -702.00 -1.72 -30.36 16 4 C -0.27 -14.17 9.49 84.03 0.80 -13.37 16 5 H 0.06 2.94 7.92 -2.91 -0.02 2.91 16 6 C -0.03 -1.87 4.93 84.86 0.42 -1.45 16 7 N -0.91 -51.25 11.32 21.65 0.25 -51.01 16 8 Si 0.95 43.56 29.61 68.60 2.03 45.59 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 C 0.15 5.75 5.69 86.38 0.49 6.25 16 13 C -0.12 -4.32 5.65 30.59 0.17 -4.15 16 14 C 0.13 3.82 5.67 86.38 0.49 4.31 16 15 N -0.72 -17.57 5.55 -463.07 -2.57 -20.13 16 16 C 0.52 13.09 7.01 87.66 0.61 13.70 16 17 O -0.58 -19.12 15.28 -3.05 -0.05 -19.17 16 18 C -0.14 -2.54 3.51 -10.52 -0.04 -2.57 16 19 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 20 C -0.15 -2.53 6.67 31.61 0.21 -2.32 16 21 C 0.04 0.70 7.65 72.48 0.55 1.26 16 22 O -0.39 -8.07 11.65 -148.98 -1.74 -9.80 16 23 C 0.06 1.02 7.17 72.48 0.52 1.54 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 3.55 5.32 -2.39 -0.01 3.54 16 28 H 0.03 1.13 8.10 -2.39 -0.02 1.11 16 29 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 30 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 31 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.41 8.41 8.47 -92.71 -0.79 7.62 16 37 H 0.08 1.81 6.50 -2.38 -0.02 1.79 16 38 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.05 1.10 7.86 -2.39 -0.02 1.09 16 Total: -1.00 -64.47 343.14 1.89 -62.58 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.20 Total: 17.54 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 5.49 Total: 4.76 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -4.05 Total: -101.50 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.78 Total: -28.97 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -64.47 1.89 -62.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707450227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.552 kcal (2) G-P(sol) polarization free energy of solvation -64.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds