Wall clock time and date at job start Mon Mar 30 2020 01:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47002 * 2 1 4 4 C 1.42901 * 114.00010 * 180.02562 * 3 2 1 5 5 C 1.50692 * 109.46900 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00706 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99576 * 179.97438 * 5 4 3 8 8 C 1.46918 * 120.63391 * 359.97153 * 7 5 4 9 9 C 1.53194 * 108.78089 * 233.63599 * 8 7 5 10 10 C 1.53043 * 109.30776 * 305.36420 * 9 8 7 11 11 C 1.53037 * 109.53875 * 61.36647 * 10 9 8 12 12 H 1.08996 * 109.49996 * 58.58482 * 11 10 9 13 13 C 1.53000 * 109.49597 * 178.68184 * 11 10 9 14 14 N 1.46500 * 109.46985 * 184.83666 * 13 11 10 15 15 C 1.36942 * 120.00460 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99496 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00487 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99716 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00173 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46865 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47187 * 120.00262 * 19 17 15 22 22 H 1.48500 * 109.47166 * 240.00208 * 19 17 15 23 23 C 1.46929 * 120.62687 * 180.02562 * 7 5 4 24 24 H 1.09004 * 109.46782 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46989 * 299.99826 * 1 2 3 26 26 H 1.08990 * 109.47440 * 59.99788 * 1 2 3 27 27 H 1.09009 * 109.46546 * 240.00302 * 2 1 3 28 28 H 1.08997 * 109.47289 * 120.00603 * 2 1 3 29 29 H 1.08998 * 109.47126 * 59.99665 * 4 3 2 30 30 H 1.09005 * 109.46434 * 299.99898 * 4 3 2 31 31 H 1.09008 * 109.58859 * 113.84030 * 8 7 5 32 32 H 1.09002 * 109.58786 * 353.42232 * 8 7 5 33 33 H 1.09003 * 109.49900 * 185.41596 * 9 8 7 34 34 H 1.08996 * 109.52526 * 65.32701 * 9 8 7 35 35 H 1.09004 * 109.46377 * 301.34200 * 10 9 8 36 36 H 1.08996 * 109.44980 * 181.37869 * 10 9 8 37 37 H 1.08993 * 109.47360 * 304.83715 * 13 11 10 38 38 H 1.09005 * 109.47252 * 64.84167 * 13 11 10 39 39 H 0.97005 * 119.99906 * 359.97438 * 14 13 11 40 40 H 0.97007 * 119.99549 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.59209 * 6.57692 * 23 7 5 42 42 H 1.09003 * 109.58217 * 246.14973 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8194 2.9161 0.0001 6 8 2.9610 3.7729 0.0005 7 7 5.1209 3.2663 0.0002 8 6 6.1722 2.2400 0.0004 9 6 7.1257 2.5109 1.1684 10 6 7.6484 3.9461 1.0726 11 6 6.4762 4.9252 1.1690 12 1 5.9501 4.7712 2.1110 13 6 7.0031 6.3602 1.1061 14 7 5.8956 7.2965 1.3140 15 6 6.1279 8.6460 1.2994 16 1 7.1277 9.0200 1.1352 17 6 5.0786 9.5331 1.4959 18 7 3.8601 9.0773 1.6956 19 14 5.3957 11.3739 1.4768 20 1 6.8390 11.6250 1.2340 21 1 4.5956 12.0028 0.3954 22 1 5.0044 11.9572 2.7852 23 6 5.5153 4.6817 0.0015 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9765 0.8892 31 1 6.7238 2.2818 -0.9390 32 1 5.7211 1.2547 0.1179 33 1 7.9634 1.8148 1.1232 34 1 6.5940 2.3795 2.1107 35 1 8.1592 4.0837 0.1195 36 1 8.3461 4.1335 1.8888 37 1 7.7531 6.5063 1.8833 38 1 7.4522 6.5400 0.1293 39 1 4.9976 6.9605 1.4612 40 1 3.1268 9.6973 1.8332 41 1 4.6307 5.3074 0.1198 42 1 6.0133 4.9230 -0.9377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713223234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:25 Heat of formation + Delta-G solvation = -76.699637 kcal Electronic energy + Delta-G solvation = -21201.298260 eV Core-core repulsion = 17988.531245 eV Total energy + Delta-G solvation = -3212.767015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15821 -38.22386 -37.12090 -34.90322 -32.91836 -31.77227 -31.59441 -29.86147 -28.01223 -25.48997 -24.72852 -23.13843 -22.97127 -21.40886 -20.19856 -18.97728 -17.43457 -17.00018 -16.58441 -16.55579 -15.56349 -15.06816 -14.75532 -14.59056 -14.25701 -13.85578 -13.59092 -13.38744 -13.01618 -12.90520 -12.69162 -12.62951 -12.41870 -12.27942 -11.59732 -11.55725 -11.37613 -11.09737 -10.99253 -10.81498 -10.63373 -10.36048 -10.27160 -9.92592 -9.88184 -9.60249 -9.47707 -8.81899 -8.47762 -6.84490 -5.67027 -2.97115 2.71955 2.76842 3.49074 3.53662 3.56789 3.73028 4.49753 4.61975 4.69270 4.79173 4.85608 4.86117 4.97304 5.03612 5.04584 5.11104 5.22382 5.32597 5.38244 5.45506 5.65799 5.66078 5.69619 5.80533 5.84209 5.93301 5.97150 6.10662 6.14595 6.23441 6.41511 6.57817 6.62671 6.79888 6.91073 6.93348 7.51211 7.77299 8.34334 8.50468 9.61410 10.19529 10.53612 11.55249 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.004230 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.343343 B = 6617.864979 C = 7906.955104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.363 6.363 4 C 0.048 3.952 5 C 0.509 3.491 6 O -0.507 6.507 7 N -0.612 5.612 8 C 0.106 3.894 9 C -0.134 4.134 10 C -0.112 4.112 11 C -0.108 4.108 12 H 0.074 0.926 13 C 0.161 3.839 14 N -0.734 5.734 15 C -0.242 4.242 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.928 5.928 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.122 3.878 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.104 0.896 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -23.177 -3.747 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.281 6.281 4 C -0.032 4.032 5 C 0.295 3.705 6 O -0.381 6.381 7 N -0.348 5.348 8 C -0.017 4.017 9 C -0.172 4.172 10 C -0.150 4.150 11 C -0.127 4.127 12 H 0.092 0.908 13 C 0.033 3.967 14 N -0.378 5.378 15 C -0.373 4.373 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.577 5.577 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.000 4.000 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.037 0.963 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.122 0.878 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.107 -22.387 -3.767 22.913 hybrid contribution 0.155 0.598 0.093 0.625 sum 3.261 -21.789 -3.675 22.336 Atomic orbital electron populations 1.21732 0.93398 1.02093 1.03666 1.22536 0.96064 0.83527 0.99963 1.88064 1.18603 1.26123 1.95344 1.22228 0.83808 0.95182 1.01986 1.20185 0.82515 0.90407 0.77394 1.90802 1.48625 1.51489 1.47136 1.48130 1.04700 1.08025 1.73989 1.21750 0.89764 0.90912 0.99284 1.21921 0.98859 0.97898 0.98570 1.21519 0.97722 0.93456 1.02337 1.21691 0.95842 0.96237 0.98964 0.90774 1.20627 0.91681 0.86656 0.97756 1.42436 1.06148 1.02294 1.86965 1.19242 0.93990 0.82612 1.41480 0.91190 1.24769 0.95457 0.97946 1.02797 1.69694 0.99026 1.33293 1.55652 0.86134 0.77168 0.85818 0.77156 1.20618 1.21877 1.21915 1.21726 1.00454 0.79763 0.98023 0.91079 0.91565 0.91627 0.93347 0.93297 0.90618 0.90542 0.91148 0.90458 0.90846 0.91468 0.91716 0.91475 0.96077 0.96266 0.78056 0.93518 0.87774 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.52 6.66 37.16 0.25 0.76 16 3 O -0.36 -5.06 9.88 -55.14 -0.54 -5.61 16 4 C 0.05 0.56 4.76 36.00 0.17 0.73 16 5 C 0.51 8.29 7.77 -10.99 -0.09 8.21 16 6 O -0.51 -11.20 15.91 -14.35 -0.23 -11.43 16 7 N -0.61 -8.73 2.97 -172.79 -0.51 -9.24 16 8 C 0.11 1.00 6.34 -3.71 -0.02 0.97 16 9 C -0.13 -1.25 6.08 -26.61 -0.16 -1.42 16 10 C -0.11 -1.34 5.17 -26.69 -0.14 -1.48 16 11 C -0.11 -1.77 2.37 -90.52 -0.21 -1.99 16 12 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 13 C 0.16 3.28 5.65 -4.04 -0.02 3.25 16 14 N -0.73 -19.32 5.38 -59.91 -0.32 -19.65 16 15 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 16 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -29.49 13.06 55.49 0.72 -28.77 16 19 Si 0.91 23.14 29.55 -169.99 -5.02 18.11 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 23 C 0.12 2.10 5.51 -3.73 -0.02 2.08 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.65 7.94 -51.93 -0.41 0.24 16 30 H 0.08 0.69 7.69 -51.93 -0.40 0.29 16 31 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.39 10.90 6.89 -40.82 -0.28 10.62 16 40 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 41 H 0.10 2.28 6.20 -51.93 -0.32 1.96 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -36.14 338.96 -8.10 -44.24 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.19 Total: 4.68 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.11 Total: 2.55 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.11 Total: -57.65 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.77 Total: -17.04 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.14 -8.10 -44.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713223234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.458 kcal (2) G-P(sol) polarization free energy of solvation -36.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds